si:dkey-9k7.3 (LOC106608480)


Basic Information

Item Value
gene id si:dkey-9k7.3
gene name LOC106608480
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 60189515 ~ 60233148 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958309.1
gcaaagttcaaaggggccgaatactttcgcaaggcactgtataaataaCTGACACGtcttttctttcctctctttctctctcttcctctttctctcaggCACAGTGTCTTTGGTTTGTTGAGTTTCTGTTACCAACCTCAACACTGATCGGTTCActtcctgtcacacacacacacacatttacatgcacacacGCAGAGTCACACAAcagtcacacaacacacacatgcaggaacATGGTGGTTTAGACCACAAATACAAACCCTCAGAGTTGGCTGGACATACAAACAGACAGGAGTACCGGTTTCTTTCTCTCTACAAGTCAACCCTTCTACAACTCAGATGGAGTTTGCCTGCAGTCACGTAGTGTGTAACTGGAGCCCAGAAGGGAGTTTAATGGGGGGCTCAGATGAGGGGGGTTCAGGTTTGAGTGTGTACCCCTGTAGTCCTCCAGGTGAGGGGGGGACCACAGATCCAGGTGTAGCCCTCAGACTGTCCGTCACAGAGCACATGTACGACAACCGCATCTCAGTCATCCCTCAGCAAGAGCCAGGACTAGTGCCCCCACCTTTGCCCCCTCGACGTTTTGAGTCTCAGGAGTACCCACAATGCACCTCTCtgcctcccccacctccccctctttcctctctgcctcccccccTACCAGCCCGAGgtgCGGAAGGccgaggagagcagagcatcagATTGAAGGCTAAtgttaatgttctctctctcagtgttggACGACTCGTAGATATCAGTAGAGcATCTGGAATCCAGACCACTCAGTGTCCCGTGATGCACTGTGGGAGATGTAGTGCTGCCCTGTCCTCCCTGAGTTCTGTACAGaacacacaggaaactgctgtgtggCTGTGTGAGTTCTGTGGTCTCCAGAACACCCTGTCTACTTCAGGTCCTGGTTCCAAGGTGGGCCCCAGGGTTAGAGGGGCTCCTAGAGGGAGAGATGTGATCTACCTCCTCCGTCAGACAGACCAGGACTACGAAAACCTGGAGGATGTCATGGTGGTCTTCTGTGTTGATATATCTGGGAGCATGAGTGTCACCTCTGagGTCACCCCAGGGAATCCTATGAGGTCAGCAACCTACGTCTCCCGACTACAGagTATTCAGGATGCCCTCCAGAGGGCACTGTCCTCTCTACTTAAGACTTCACCTCTCCGCCGAGTCGCCATTGTTACCTTCAATGACGAggtAGTAGTGTACGGTGATGGTTCAGGTGTACCAGCCTCTCTGAGGGACTGGGCTCTAGTTGATTATGACTATCTGAGACAACAGGGTCAACAGTACAACACTCCACACTGTATAGCTGAGAGCTACCAACACCTCTCACTGAGAGTCAAAGAaTTGCGAGAACACGGGGCTACAGCGTTGGGTCCTGCAGCCTTGGTCTCCGTTGCCATGGCGTCTCGATTCGTGGGGTCAAAGGTGATCTTGTGTACAGACGGGCGAGCTAACATCGGATtgggtgagatggaggagagtcccgcccctttctcctccccccaGTCACCTTACTTCTACAGACAGCTAGCCAACGAGGCAGCTAACAAAGGTGTGATAGTTTCAGTTATGACCTTTGAGGGCACAGACTGCAGGTTGGCTGAGGTGGGACTACTGGCTGACCAGACTGGAGGaaggGTAAACATAGTAAACATTGGTACCGTAGCAACAGAGATCCAGTCAGCTCTGGCCGACAACATCTTAGCGACGGGCGTCAGGGCAACGTTACTAGCAGCTGATGGCATgtaTTTTCCCTATGAGGAGTGTAACCATTGTCTGGTAAGGGATATAGGGAACGTAACCGAAGGGGTAGAGATCACCTTTCAGTTTGCCTGCAAGCCTGATAGTACAGAGAGTTTCATGCGTAGAGACAGACTACCGTTCCAGCTACAGCTGTCCTTCACCACCAGAGATCAACAGAAAGTAACACGCATCATTACTGAACAGAGACGGGTTACAACcagcagctgggTGTGGGCAGGCAGTCTGAACATGTCAGTGTTAGGGGTCCACTGTGCCCAGCTGTGTGCCAGGTTAACTATGAAGGGAAGAGTCCACGAAGCACAGAGACAACTCAGAGCACAGCAAGACCTGCTCAAAGACATCAGTGAGCAGAGGTCCAACCCAAAGGAGGAGAGTCTCTACGGAAACTGGATCGATACCATGACAACCATCTGTGACGACCTCACCACAGACTCCCAGAtgGCCCTCTCTGATGAGGCAGCTGAGGTGGTGTACCAGATGAAGAGAGCCAGCAGTGTGGACCAGAGAAgaaggaaacagacagacatgGTGGCTCTGTGAAACCAGCAGTGTGGACCAGAGAAGAAGGAAACAGACAGGCATGGTAGCTCTGTGAAACCAGCAGTGTGGACCAGAGAAGAAGGCATGGTGGCTCTGTGAGGAGCCAGTCCAGAGCAGTCACAGATGGCAGAGCCAGTTGCAGCATCAACAGTAGGCCAAACTGGTAGCCATGTTAGAGACTGTCCACTCTCTCAAATAACTCCTAATGTACTACCTAAATATGATATAAATACATGTTGTATGAATGTTTGGTACTGTACTTAAAAATAAATTAAGATGATGGtgttttga
>XM_036958310.1
caaagttcaaaggggccgaatactttcgcaaggcactgtataaataaCTGACACGtcttttctttcctctctttctctctcttcctctttctctcaggCACAGTGTCTTTGGTTTGTTGAGTTTCTGTTACCAACCTCAACACTGATCGGTTCActtcctgtcacacacacacacacatttacatgcacacacGCAGAGTCACACAAcagtcacacaacacacacatgcaggaacATGGTGGTTTAGACCACAAATACAAACCCTCAGAGTTGGCTGGACATACAAACAGACAGGAGTACCGGTTTCTTTCTCTCTACAAGTCAACCCTTCTACAACTCAGATGGAGTTTGCCTGCAGTCACGTAGTGTGTAACTGGAGCCCAGAAGGGAGTTTAATGGGGGGCTCAGATGAGGGGGGTTCAGGTTTGAGTGTGTACCCCTGTAGTCCTCCAGGTGAGGGGGGGACCACAGATCCAGGTGTAGCCCTCAGACTGTCCGTCACAGAGCACATGTACGACAACCGCATCTCAGTCATCCCTCAGCAAGAGCCAGGACTAGTGCCCCCACCTTTGCCCCCTCGACGTTTTGAGTCTCAGGAGTACCCACAATGCACCTCTCtgcctcccccacctccccctctttcctctctgcctcccccccTACCAGCCCGAGgtgCGGAAGGccgaggagagcagagcatcagATTGAAGGCTAAtgttaatgttctctctctcagtgttggACGACTCGTAGATATCAGTAGAGcATCTGGAATCCAGACCACTCAGTGTCCCGTGATGCACTGTGGGAGATGTAGTGCTGCCCTGTCCTCCCTGAGTTCTGTACAGaacacacaggaaactgctgtgtggCTGTGTGAGTTCTGTGGTCTCCAGAACACCCTGTCTACTTCAGGTCCTGGTTCCAAGGTGGGCCCCAGGGTTAGAGGGGCTCCTAGAGGGAGAGATGTGATCTACCTCCTCCGTCAGACAGACCAGGACTACGAAAACCTGGAGGATGTCATGGTGGTCTTCTGTGTTGATATATCTGGGAGCATGAGTGTCACCTCTGagGTCACCCCAGGGAATCCTATGAGGTCAGCAACCTACGTCTCCCGACTACAGagTATTCAGGATGCCCTCCAGAGGGCACTGTCCTCTCTACTTAAGACTTCACCTCTCCGCCGAGTCGCCATTGTTACCTTCAATGACGAggtAGTAGTGTACGGTGATGGTTCAGGTGTACCAGCCTCTCTGAGGGACTGGGCTCTAGTTGATTATGACTATCTGAGACAACAGGGTCAACAGTACAACACTCCACACTGTATAGCTGAGAGCTACCAACACCTCTCACTGAGAGTCAAAGAaTTGCGAGAACACGGGGCTACAGCGTTGGGTCCTGCAGCCTTGGTCTCCGTTGCCATGGCGTCTCGATTCGTGGGGTCAAAGGTGATCTTGTGTACAGACGGGCGAGCTAACATCGGATtgggtgagatggaggagagtcccgcccctttctcctccccccaGTCACCTTACTTCTACAGACAGCTAGCCAACGAGGCAGCTAACAAAGGTGTGATAGTTTCAGTTATGACCTTTGAGGGCACAGACTGCAGGTTGGCTGAGGTGGGACTACTGGCTGACCAGACTGGAGGaaggGTAAACATAGTAAACATTGGTACCGTAGCAACAGAGATCCAGTCAGCTCTGGCCGACAACATCTTAGCGACGGGCGTCAGGGCAACGTTACTAGCAGCTGATGGCATgtaTTTTCCCTATGAGGAGTGTAACCATTGTCTGGTAAGGGATATAGGGAACGTAACCGAAGGGGTAGAGATCACCTTTCAGTTTGCCTGCAAGCCTGATAGTACAGAGAGTTTCATGCGTAGAGACAGACTACCGTTCCAGCTACAGCTGTCCTTCACCACCAGAGATCAACAGAAAGTAACACGCATCATTACTGAACAGAGACGGGTTACAACcagcagctgggTGTGGGCAGGCAGTCTGAACATGTCAGTGTTAGGGGTCCACTGTGCCCAGCTGTGTGCCAGGTTAACTATGAAGGGAAGAGTCCACGAAGCACAGAGACAACTCAGAGCACAGCAAGACCTGCTCAAAGACATCAGTGAGCAGAGGTCCAACCCAAAGGAGGAGAGTCTCTACGGAAACTGGATCGATACCATGACAACCATCTGTGACGACCTCACCACAGACTCCCAGGCCCTCTCTGATGAGGCAGCTGAGGTGGTGTACCAGATGAAGAGAGCCAGCAGTGTGGACCAGAGAAgaaggaaacagacagacatggtGGCTCTGTGAAACCAGCAGTGTGGACCAGAGAAGAAGGAAACAGACAGGCATGGTGGCTCTGTGAAACCAGCAGTGTGGACCAGAGAAGAAGGAAACAGACAGGCATGGTAGCTCTGTGAAACCAGCAGTGTGGACCAGAGAAGAAGGCATGGTGGCTCTGTGAGGAGCCAGTCCAGAGCAGTCACAGATGGCAGAGCCAGTTGCAGCATCAACAGTAGGCCAAACTGGTAGCCATGTTAGAGACTGTCCACTCTCTCAAATAACTCCTAATGTACTACCTAAATATGATATAAATACATGTTGTATGAATGTTTGGTACTGTACTTAAAAATAAATTAAGATGATGGtgttttga

Function

NR:

description
circularly permutated Ras protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958309.1 False 2619 mRNA 0.51 19 60189515 60233148
XM_036958310.1 True 2670 mRNA 0.51 18 60189516 60233148

Neighbor

gene id symbol gene type direction distance location
LOC110500788 LOC106608498 coding upstream 59880 60125015 ~ 60129635 (+)
LOC118942961 LOC106608493 coding upstream 79141 60089893 ~ 60110374 (+)
LOC118942813 LOC106608496 coding upstream 99365 60086040 ~ 60090150 (+)
LOC110500904 NA coding upstream 106477 60005761 ~ 60123961 (+)
LOC110500789 LOC106608496 coding upstream 133912 60036086 ~ 60055603 (+)
LOC110500950 LOC106608479 coding downstream 24033 60257181 ~ 60272808 (+)
LOC118942814 LOC106578145 coding downstream 51477 60284625 ~ 60307905 (+)
LOC118943030 NA coding downstream 86455 60319603 ~ 60319710 (+)
LOC110500797 4f2 coding downstream 380242 60613390 ~ 60629257 (+)
LOC110500798 LOC106608478 coding downstream 399264 60632412 ~ 60654106 (+)
G1758666 NA non-coding upstream 1898 60130890 ~ 60187617 (+)
G1758673 NA non-coding upstream 168224 60016248 ~ 60021291 (+)
G1758665 NA non-coding upstream 183849 60005433 ~ 60005666 (+)
G1758784 NA non-coding downstream 79083 60312231 ~ 60313527 (+)
G1758782 NA non-coding downstream 80525 60313673 ~ 60314671 (+)
G1758802 NA non-coding downstream 84330 60317478 ~ 60329254 (+)
G1758788 NA non-coding downstream 111274 60344422 ~ 60345077 (+)
G1758818 NA non-coding downstream 118498 60351646 ~ 60353092 (+)
G1757578 NA other upstream 1502992 58683137 ~ 58686523 (+)
rwdd rwdd4 other upstream 1779436 58405236 ~ 58411726 (+)
G1756789 NA other upstream 2261271 57926480 ~ 57928244 (+)
G1755570 NA other upstream 3394941 56793731 ~ 56794574 (+)
G1755158 NA other upstream 3801893 56386407 ~ 56387622 (+)
G1758801 NA other downstream 89067 60322215 ~ 60326620 (+)
G1758786 NA other downstream 125682 60358349 ~ 60359351 (+)
G1759168 LOC101154678 other downstream 489010 60722158 ~ 60722472 (+)
G1759267 NA other downstream 577054 60810202 ~ 60810620 (+)

Expression


Co-expression Network