LOC110500788 (LOC106608498)


Basic Information

Item Value
gene id LOC110500788
gene name LOC106608498
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 60125015 ~ 60129635 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578320.2
GTCAACAGTCGGCTTCGTTAGCCTCACTACTCAGACACTGTCTCCGAGCTATGAGTGAAACTATAATACCCAGCATTCCACTGCCGCCTGCCGGAAAAGGAAAACGCATGGATGCGGGGTAGCCAAATAATCTGTCGCATCGTCAGGCCACCCACCCACCATATGCAGCAGTGATTTTTAAGAAGTGGGACAAGCGAACAGATGGCGCATCTAGGCTGCGCGCGACAGGGACACCTACAGTGTTGAAACAGTGTTGGATATGAACAAGGCAGCTAGTAAAGGCGTGTTTTATGTAGTCTACATCTATGCCATTTCTGAGTGGATTGGATAATATTACATCGTAGGATTTCCTCCTGAATCGTTGCTTGAGCCTGCCTACTCTACTTTGGCGCGGGTATTGGAAAACACGCAGTGACAGGGCCATCGCCACCGGTAGCTATAATCAGAGAGGAAGAAGCGAAGTGAAGCTTTTGCTATAATCTCCTATTTGACGCCTCTCTCAGTTGGTAAACAATGGTTGACAACCGTTATGCCACGGCTTTGGTTATCAGCTGTGTGCTCAGCGTGCTGGCTACGGTGTACCTGTCTGTAGCGGTTGGGACGCAGCACTGGTACCAGTACACTAGTCCCCCGGTGCGCGGCGAGGCCAACGTATCCGAACTGCGGTCGCTGCATGATGAATTCATGGACGGGGAATTCGATGAGAAGACCTACAGCGACACGCTCTTCCGTCTCAACGGGACCATAGGCCTCTGGTGGCGCTGCGTTCTGGTGCCATCTCATACCCACTGGTACAAGGAGTCGGATCCAAAGATGGTGATGAAATGTGTTAGCTTCACGTTAACACAGCAGTTTACCCCAAAGTACAAAGAGCCAGGGAACCAcaacagtggagaggacatgCTGCGGACCTACCTGTGGAGGTGCCAGTTCCTACTGCCATTAATCTCCTTAGGTCTGGTGGTGCTGGCAGGCTTGATAGGGTTCTGTGCCTGCCTCTGCCACAGTCTCACCCCCACCCTGGGCATAGGAATGCTCCACCTACTGGCTGGGCTGTGTACTCTAGCCACAGTGTGCTGTTACCTGGCAGGAATGGATCTCCTCCACAGGGTCTCTGTGCTGCCAGACAAGGTGGACGGCTCCCTGGGCTGGTCGCTCTACCTGGCCCTCATCTCATCCCCACTGCACATGATGGCTGCCGCTCTCCTGGTGTGGGCGGCACGCAGCCACAGTCAGAACTACTACCGCATGACTGCCTACAGGGTAGCATAGAGACCAGGCCTGCTGGTGCCTGACTATCTGTTTTTATATAGGCACATTTCCAAATCAAAACCATAATTCCAACCACATGATACTTGTTGATCGTGAAATAACTGAATAAGAATATAGAAAATGCTAATCtttgccctctgataggctactgGGATTTTCACCCTATTGCTTTTCACACAGTTGCTTATCCAATCATTTCAGATCTATTAAAGTGCCTAGTGTAAGAGTGAGGGAGTTGACATTGGGAAACAGTGTGACCCAGAACAAAATGTACCATTGGTTAGACCAACAAGCATATAATTGTTTATAATAGACTTTCCAAACCGTAACCAGCCACAGTCAGAGATGCTTCCATTCGACTTTCATATGTACTAACTAGCAAGAGATATTATTGGCCCATGTTTGGAAAATCAAACCGTTCTGAAAGAAATATGTTTATGGTGATTTTAGTCCAAACATTTGattacaggaccagtcaaaagtttggtcacaccgactcattccagggttttcttattctacattgtagaaaaataatgaagacatcaaaactatcaaataacacatatggaatcatgta
>XM_036958308.1
CAGTCGGCTTCGTTAGCCTCACTACTCAGACACTGTCTCCGAGCTATGAGTGAAACTATAATACCCAGCATTCCACTGCCGCCTGCCGGAAAAGGAAAACGCATGGATGTATGTGTTTACAATCTTTCTTAACAAGCTTAAATTCGCAGGTGCTGTTCCTCATGAAACAAGTGTAGGCGATACCGGCAAGAGAAAATAATGACACATGTATTATTTGCCACTGCTCATTTAGTATGATATAACAGTATGTGTTTGTTTTGTACTTGTACAACAGGCGGGGTAGCCAAATAATCTGTCGCATCGTCAGGCCACCCACCCACCATATGCAGCAGTGATTTTTAAGAAGTGGGACAAGCGAACAGATGGCGCATCTAGGCTGCGCGCGACAGGGACACCTACAGTGTTGAAACAGTGTTGGATATGAACAAGGCAGCTAGTAAAGGCGTGTTTTATGTAGTCTACATCTATGCCATTTCTGAGTGGATTGGATAATATTACATCGTAGGATTTCCTCCTGAATCGTTGCTTGAGCCTGCCTACTCTACTTTGGCGCGGGTATTGGAAAACACGCAGTGACAGGGCCATCGCCACCGGTAGCTATAATCAGAGAGGAAGAAGCGAAGTGAAGCTTTTGCTATAATCTCCTATTTGACGCCTCTCTCAGTTGGTAAACAATGGTTGACAACCGTTATGCCACGGCTTTGGTTATCAGCTGTGTGCTCAGCGTGCTGGCTACGGTGTACCTGTCTGTAGCGGTTGGGACGCAGCACTGGTACCAGTACACTAGTCCCCCGGTGCGCGGCGAGGCCAACGTATCCGAACTGCGGTCGCTGCATGATGAATTCATGGACGGGGAATTCGATGAGAAGACCTACAGCGACACGCTCTTCCGTCTCAACGGGACCATAGGCCTCTGGTGGCGCTGCGTTCTGGTGCCATCTCATACCCACTGGTACAAGGAGTCGGATCCAAAGATGGTGATGAAATGTGTTAGCTTCACGTTAACACAGCAGTTTACCCCAAAGTACAAAGAGCCAGGGAACCAcaacagtggagaggacatgCTGCGGACCTACCTGTGGAGGTGCCAGTTCCTACTGCCATTAATCTCCTTAGGTCTGGTGGTGCTGGCAGGCTTGATAGGGTTCTGTGCCTGCCTCTGCCACAGTCTCACCCCCACCCTGGGCATAGGAATGCTCCACCTACTGGCTGGGCTGTGTACTCTAGCCACAGTGTGCTGTTACCTGGCAGGAATGGATCTCCTCCACAGGGTCTCTGTGCTGCCAGACAAGGTGGACGGCTCCCTGGGCTGGTCGCTCTACCTGGCCCTCATCTCATCCCCACTGCACATGATGGCTGCCGCTCTCCTGGTGTGGGCGGCACGCAGCCACAGTCAGAACTACTACCGCATGACTGCCTACAGGGTAGCATAGAGACCAGGCCTGCTGGTGCCTGACTATCTGTTTTTATATAGGCACATTTCCAAATCAAAACCATAATTCCAACCACATGATACTTGTTGATCGTGAAATAACTGAATAAGAATATAGAAAATGCTAATCtttgccctctgataggctactgGGATTTTCACCCTATTGCTTTTCACACAGTTGCTTATCCAATCATTTCAGATCTATTAAAGTGCCTAGTGTAAGAGTGAGGGAGTTGACATTGGGAAACAGTGTGACCCAGAACAAAATGTACCATTGGTTAGACCAACAAGCATATAATTGTTTATAATAGACTTTCCAAACCGTAACCAGCCACAGTCAGAGATGCTTCCATTCGACTTTCATATGTACTAACTAGCAAGAGATATTATTGGCCCATGTTTGGAAAATCAAACCGTTCTGAAAGAAATATGTTTATGGTGATTTTAGTCCAAACATTTGattacaggaccagtcaaaagtttggtcacaccgactcattccagggttttcttattctacattgtagaaaaataatgaagacatcaaaactatcaaataacacatatggaatcatgta

Function

NR:

description
claudin domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578320.2 False 1852 mRNA 0.48 5 60125015 60129635
XM_036958308.1 True 2013 mRNA 0.47 4 60125020 60129635

Neighbor

gene id symbol gene type direction distance location
LOC118942961 LOC106608493 coding upstream 14641 60089893 ~ 60110374 (+)
LOC118942813 LOC106608496 coding upstream 34865 60086040 ~ 60090150 (+)
LOC110500904 NA coding upstream 41977 60005761 ~ 60123961 (+)
LOC110500789 LOC106608496 coding upstream 69412 60036086 ~ 60055603 (+)
LOC110500791 LOC106608487 coding upstream 230429 59886153 ~ 59894586 (+)
si:dkey-9k7.3 LOC106608480 coding downstream 59880 60189515 ~ 60233148 (+)
LOC110500950 LOC106608479 coding downstream 127546 60257181 ~ 60272808 (+)
LOC118942814 LOC106578145 coding downstream 154990 60284625 ~ 60307905 (+)
LOC118943030 NA coding downstream 189968 60319603 ~ 60319710 (+)
LOC110500797 4f2 coding downstream 483755 60613390 ~ 60629257 (+)
G1758673 NA non-coding upstream 103724 60016248 ~ 60021291 (+)
G1758665 NA non-coding upstream 119349 60005433 ~ 60005666 (+)
G1758526 NA non-coding upstream 165900 59957823 ~ 59959115 (+)
G1758666 NA non-coding downstream 1255 60130890 ~ 60187617 (+)
G1758746 NA non-coding downstream 86947 60216582 ~ 60216977 (+)
G1758784 NA non-coding downstream 182596 60312231 ~ 60313527 (+)
G1758782 NA non-coding downstream 184038 60313673 ~ 60314671 (+)
G1758802 NA non-coding downstream 187843 60317478 ~ 60329254 (+)
G1757578 NA other upstream 1438492 58683137 ~ 58686523 (+)
rwdd rwdd4 other upstream 1714936 58405236 ~ 58411726 (+)
G1756789 NA other upstream 2196771 57926480 ~ 57928244 (+)
G1755570 NA other upstream 3330441 56793731 ~ 56794574 (+)
G1755158 NA other upstream 3737393 56386407 ~ 56387622 (+)
G1758801 NA other downstream 192580 60322215 ~ 60326620 (+)
G1758818 NA other downstream 222011 60351646 ~ 60353092 (+)
G1758786 NA other downstream 229195 60358349 ~ 60359351 (+)
G1759168 LOC101154678 other downstream 592523 60722158 ~ 60722472 (+)
G1759267 NA other downstream 680567 60810202 ~ 60810620 (+)

Expression


Co-expression Network