RNA id: XM_036958309.1


Basic Information

Item Value
RNA id XM_036958309.1
length 2619
RNA type mRNA
GC content 0.51
exon number 19
gene id si:dkey-9k7.3
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 60189515 ~ 60233148 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcaaagttcaaaggggccgaatactttcgcaaggcactgtataaataaCTGACACGtcttttctttcctctctttctctctcttcctctttctctcaggCACAGTGTCTTTGGTTTGTTGAGTTTCTGTTACCAACCTCAACACTGATCGGTTCActtcctgtcacacacacacacacatttacatgcacacacGCAGAGTCACACAAcagtcacacaacacacacatgcaggaacATGGTGGTTTAGACCACAAATACAAACCCTCAGAGTTGGCTGGACATACAAACAGACAGGAGTACCGGTTTCTTTCTCTCTACAAGTCAACCCTTCTACAACTCAGATGGAGTTTGCCTGCAGTCACGTAGTGTGTAACTGGAGCCCAGAAGGGAGTTTAATGGGGGGCTCAGATGAGGGGGGTTCAGGTTTGAGTGTGTACCCCTGTAGTCCTCCAGGTGAGGGGGGGACCACAGATCCAGGTGTAGCCCTCAGACTGTCCGTCACAGAGCACATGTACGACAACCGCATCTCAGTCATCCCTCAGCAAGAGCCAGGACTAGTGCCCCCACCTTTGCCCCCTCGACGTTTTGAGTCTCAGGAGTACCCACAATGCACCTCTCtgcctcccccacctccccctctttcctctctgcctcccccccTACCAGCCCGAGgtgCGGAAGGccgaggagagcagagcatcagATTGAAGGCTAAtgttaatgttctctctctcagtgttggACGACTCGTAGATATCAGTAGAGcATCTGGAATCCAGACCACTCAGTGTCCCGTGATGCACTGTGGGAGATGTAGTGCTGCCCTGTCCTCCCTGAGTTCTGTACAGaacacacaggaaactgctgtgtggCTGTGTGAGTTCTGTGGTCTCCAGAACACCCTGTCTACTTCAGGTCCTGGTTCCAAGGTGGGCCCCAGGGTTAGAGGGGCTCCTAGAGGGAGAGATGTGATCTACCTCCTCCGTCAGACAGACCAGGACTACGAAAACCTGGAGGATGTCATGGTGGTCTTCTGTGTTGATATATCTGGGAGCATGAGTGTCACCTCTGagGTCACCCCAGGGAATCCTATGAGGTCAGCAACCTACGTCTCCCGACTACAGagTATTCAGGATGCCCTCCAGAGGGCACTGTCCTCTCTACTTAAGACTTCACCTCTCCGCCGAGTCGCCATTGTTACCTTCAATGACGAggtAGTAGTGTACGGTGATGGTTCAGGTGTACCAGCCTCTCTGAGGGACTGGGCTCTAGTTGATTATGACTATCTGAGACAACAGGGTCAACAGTACAACACTCCACACTGTATAGCTGAGAGCTACCAACACCTCTCACTGAGAGTCAAAGAaTTGCGAGAACACGGGGCTACAGCGTTGGGTCCTGCAGCCTTGGTCTCCGTTGCCATGGCGTCTCGATTCGTGGGGTCAAAGGTGATCTTGTGTACAGACGGGCGAGCTAACATCGGATtgggtgagatggaggagagtcccgcccctttctcctccccccaGTCACCTTACTTCTACAGACAGCTAGCCAACGAGGCAGCTAACAAAGGTGTGATAGTTTCAGTTATGACCTTTGAGGGCACAGACTGCAGGTTGGCTGAGGTGGGACTACTGGCTGACCAGACTGGAGGaaggGTAAACATAGTAAACATTGGTACCGTAGCAACAGAGATCCAGTCAGCTCTGGCCGACAACATCTTAGCGACGGGCGTCAGGGCAACGTTACTAGCAGCTGATGGCATgtaTTTTCCCTATGAGGAGTGTAACCATTGTCTGGTAAGGGATATAGGGAACGTAACCGAAGGGGTAGAGATCACCTTTCAGTTTGCCTGCAAGCCTGATAGTACAGAGAGTTTCATGCGTAGAGACAGACTACCGTTCCAGCTACAGCTGTCCTTCACCACCAGAGATCAACAGAAAGTAACACGCATCATTACTGAACAGAGACGGGTTACAACcagcagctgggTGTGGGCAGGCAGTCTGAACATGTCAGTGTTAGGGGTCCACTGTGCCCAGCTGTGTGCCAGGTTAACTATGAAGGGAAGAGTCCACGAAGCACAGAGACAACTCAGAGCACAGCAAGACCTGCTCAAAGACATCAGTGAGCAGAGGTCCAACCCAAAGGAGGAGAGTCTCTACGGAAACTGGATCGATACCATGACAACCATCTGTGACGACCTCACCACAGACTCCCAGAtgGCCCTCTCTGATGAGGCAGCTGAGGTGGTGTACCAGATGAAGAGAGCCAGCAGTGTGGACCAGAGAAgaaggaaacagacagacatgGTGGCTCTGTGAAACCAGCAGTGTGGACCAGAGAAGAAGGAAACAGACAGGCATGGTAGCTCTGTGAAACCAGCAGTGTGGACCAGAGAAGAAGGCATGGTGGCTCTGTGAGGAGCCAGTCCAGAGCAGTCACAGATGGCAGAGCCAGTTGCAGCATCAACAGTAGGCCAAACTGGTAGCCATGTTAGAGACTGTCCACTCTCTCAAATAACTCCTAATGTACTACCTAAATATGATATAAATACATGTTGTATGAATGTTTGGTACTGTACTTAAAAATAAATTAAGATGATGGtgttttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2013811 lncRNA upstream 1898 60130890 ~ 60187617 (+) False G1758666
TU2013810 lncRNA upstream 56794 60130970 ~ 60132721 (+) True G1758666
TU2013816 lncRNA upstream 65554 60005761 ~ 60123961 (+) True LOC110500904
TU2013815 lncRNA upstream 134078 60052344 ~ 60055437 (+) True LOC110500789
TU2013820 lncRNA upstream 168224 60016248 ~ 60021291 (+) True G1758673
TU2013941 lncRNA downstream 79083 60312231 ~ 60313527 (+) False G1758784
TU2013943 lncRNA downstream 79083 60312231 ~ 60313527 (+) True G1758784
TU2013939 lncRNA downstream 80525 60313673 ~ 60314671 (+) True G1758782
TU2013969 lncRNA downstream 84330 60317478 ~ 60329254 (+) False G1758802
TU2013971 lncRNA downstream 84603 60317751 ~ 60329254 (+) False G1758802
XM_021578320.2 mRNA upstream 59880 60125015 ~ 60129635 (+) False LOC110500788
XM_036958308.1 mRNA upstream 59880 60125020 ~ 60129635 (+) True LOC110500788
XM_036958305.1 mRNA upstream 79141 60089893 ~ 60110374 (+) False LOC118942961
XM_036958307.1 mRNA upstream 79141 60089893 ~ 60110374 (+) False LOC118942961
XM_036958306.1 mRNA upstream 79141 60098533 ~ 60110374 (+) True LOC118942961
XM_036958313.1 mRNA downstream 24033 60257181 ~ 60271687 (+) False LOC110500950
XM_036958311.1 mRNA downstream 24033 60257181 ~ 60272808 (+) False LOC110500950
XM_036958312.1 mRNA downstream 24033 60257181 ~ 60272808 (+) True LOC110500950
XM_036956529.1 mRNA downstream 51477 60284625 ~ 60307905 (+) True LOC118942814
XR_005038766.1 mRNA downstream 86455 60319603 ~ 60319710 (+) True LOC118943030
TU2012464 other upstream 1502992 58683137 ~ 58686523 (+) True G1757578
TU2012159 other upstream 1779436 58405284 ~ 58410079 (+) False rwdd
TU2011526 other upstream 2261271 57926480 ~ 57928244 (+) True G1756789
TU2010154 other upstream 3394941 56793731 ~ 56794574 (+) True G1755570
TU2009701 other upstream 3801893 56386407 ~ 56387622 (+) True G1755158
TU2013967 other downstream 89067 60322215 ~ 60326620 (+) False G1758801
TU2013968 other downstream 89067 60322215 ~ 60326620 (+) False G1758801
TU2013964 other downstream 89366 60322514 ~ 60326620 (+) True G1758801
TU2013992 other downstream 118498 60351646 ~ 60353034 (+) False G1758818
TU2013946 other downstream 125682 60358830 ~ 60359351 (+) True G1758786

Expression Profile