RNA id: XR_005038766.1


Basic Information

Item Value
RNA id XR_005038766.1
length 108
RNA type mRNA
GC content 0.45
exon number 1
gene id LOC118943030
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 60319603 ~ 60319710 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGCTGGCTtcggcagcacatatactaaaattggaacgatacagagaagattagcatggccccttgTGCAAAGATGACACGCAAAATCGTGAAGCGTTCCCAATTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2013939 lncRNA upstream 4932 60313673 ~ 60314671 (+) True G1758782
TU2013941 lncRNA upstream 6076 60312231 ~ 60313527 (+) False G1758784
TU2013943 lncRNA upstream 6076 60312231 ~ 60313527 (+) True G1758784
TU2013901 lncRNA upstream 102626 60216582 ~ 60216977 (+) True G1758746
TU2013811 lncRNA upstream 131986 60130890 ~ 60187617 (+) False G1758666
TU2013949 lncRNA downstream 24712 60344422 ~ 60345077 (+) True G1758788
TU2013993 lncRNA downstream 31936 60351646 ~ 60353034 (+) False G1758818
TU2013995 lncRNA downstream 31936 60351646 ~ 60353034 (+) False G1758818
TU2013990 lncRNA downstream 32902 60352612 ~ 60353034 (+) False G1758818
TU2013991 lncRNA downstream 32902 60352612 ~ 60353034 (+) False G1758818
XM_036956529.1 mRNA upstream 11698 60284625 ~ 60307905 (+) True LOC118942814
XM_036958311.1 mRNA upstream 46795 60257181 ~ 60272808 (+) False LOC110500950
XM_036958312.1 mRNA upstream 46795 60257181 ~ 60272808 (+) True LOC110500950
XM_036958313.1 mRNA upstream 47916 60257181 ~ 60271687 (+) False LOC110500950
XM_036958309.1 mRNA upstream 86455 60189515 ~ 60233148 (+) False si:dkey-9k7.3
XM_036958319.1 mRNA downstream 293680 60613390 ~ 60629257 (+) True LOC110500797
XM_036958320.1 mRNA downstream 312702 60632412 ~ 60654106 (+) False LOC110500798
XM_036958321.1 mRNA downstream 312702 60632412 ~ 60654106 (+) False LOC110500798
XM_036958322.1 mRNA downstream 312702 60632412 ~ 60654106 (+) False LOC110500798
XM_036958323.1 mRNA downstream 312702 60632412 ~ 60654106 (+) False LOC110500798
TU2012464 other upstream 1633080 58683137 ~ 58686523 (+) True G1757578
TU2012159 other upstream 1909524 58405284 ~ 58410079 (+) False rwdd
TU2011526 other upstream 2391359 57926480 ~ 57928244 (+) True G1756789
TU2010154 other upstream 3525029 56793731 ~ 56794574 (+) True G1755570
TU2009701 other upstream 3931981 56386407 ~ 56387622 (+) True G1755158
TU2013967 other downstream 2505 60322215 ~ 60326620 (+) False G1758801
TU2013968 other downstream 2505 60322215 ~ 60326620 (+) False G1758801
TU2013964 other downstream 2804 60322514 ~ 60326620 (+) True G1758801
TU2013992 other downstream 31936 60351646 ~ 60353034 (+) False G1758818
TU2013946 other downstream 39120 60358830 ~ 60359351 (+) True G1758786

Expression Profile