RNA id: XM_036958322.1


Basic Information

Item Value
RNA id XM_036958322.1
length 3758
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC110500798
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 60632412 ~ 60654106 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcaagggggccgaatactttcgcaaggcactgtatatatatatatatatatatatatgtgtctgAGTGCACTCTACAGCAGTGTTCTCTTAATAAAGTTGTTGGTAACGGGCTAGTAAATGTCAAACTGAGAGAtgtaagggaggagagagagacaaggccaGATGTTGCTGTGTCAAACCGAGAGCTGTGTTCGAGGTCTGGGCCCGCTTCTCTGTGGTGgattgttctctgtctgtctgtgtgtgtgtgtgttcatgtcatTTTTTTCCAGGATCGCAATGACGAGGTGTGTGAGAGATCAGAgggctctctctccccctacctccctcacctccctctctctgtttctgtctctctccttttctcattcagacacacacagaggtgagATCAGGGGTTTTGAGAGAGCGACAGCGGGCCCATAACCGCTCCTACGAAACTCCCTCCcacacGTTGAGTCTGAGAACCAGTTACTACCTGGATCGGCTGCTGACAAACAcacccagagagaccagagactacCCTATGGCTGAGAGAACACCCCTCCAACCTCCAACTCCCCAGCCTTACCAGGACCCATGCTTCCAGCATCACACCCACCTCTCCCACCACTTCCACCCCAGTATCGGGAGCCCCAGTCTGGACCAGACATCTTGCCACCACCCACTGGAGCTCCAGATTCCCCTGGAGCAATATGAGGGAACTGGAATAGAGGCAGCACCCAGGACCCCTCTCCCCGATTCAAGCGGTCGGGGTAGTGGAAGAAGAGGTTATGTAGGCATTCATGGACATAGCAGAGGTGATAACTGCAGTGATGTTGATGGTAGAGATGGTTATTTTGGAGCGCAGAAAGCTAGCTACTGTAACAGGGGGGTTTTGGATGCCAGTGTAGGTCAAGGGGATGATTTCGGCAGCCATTTTGAAAGTCAGAACCCTGCCTACGCTAGCCAGAGGGATGAGGGCTGCGATGGCGATGACAGCAGCGCCAGCGGTAGTGGTGTTGATATTTACCACAGAATAGATGAGGGCTGTAAAAAGGATGATGTCTTTTACAGAGCGGATGAAGTCTGTAACAGTAGTAGGGATGATGTTTTCTACAGCAACAGTAGAGATTATGGGTGTGAGGAGCAAACGGACGAGGGGTCTAACACTAGAGATAAGGTCTTTTACAGAATGGATGATAACAGGAATGATGTCTTTCAAAGAACGGATGAAGTCTGTCGTAACAGGGATGACGTGGTCTACAGCAGAGATTATGTGTGTGAAGAGAGGCGAGATGGTAACAGTGGTTATAGAGACACCACTACCGGTAGCCATGATGGTGGAAACAACAGAGTTGATCATCTCTATAATGGTAGCGATATCTTTGACGATAAAGGAAAGAGGGATAGTTTGAGAAGGGTTGATGATTTCGGAGGAGACCGTGATGATTTTGGGGATAAAAGGTCCAACCTGGATCCTCCAGAGGCCCAGTTCAAGCCTGGGTTTTGGGTGAGTCCCTCTCCCCCAGATCAGTGTTCTGTGGCTTGGGAAGGCAGTGAGAAGGGTGGGGGGTACCCCAAGGATTGGGCATCTCTGTACTCCTATTCCCAGGCAGCAAGTGGCCCTAGTGGTGGTGGCGTTGGGGTGTACCGGCAAAAACTGGACTCCTTTTCAGAGGCGTTCTTCGTCAGACGCAACGTCGCCGGCAACAGAATTCCGAATGGGAATTCCGGAAGCGGAGTTTTAGGATTCGAAGCCGGAGGAGGAAGCACAGGATGGATCAAAGCGAGTGCTTACAATTCGCTCACAGACtcttccactctccctcctcctcctcctcctcaccccttccCTCTGCTCCTTAGCCCTCCTCCATCCCCTATCCCCACACCCAAACTCACCACGACCCCTTCTTTCGGGACAGTTGAACTAACCCAGACCCCAGGGGAGGATTGTAGTGGAACAGTCCAGGGTTacccctcccctcaccagccgCTCCACACTTCCCACCCCTCCACCGTCATGTGGAAGCTCCCACCCTGTCATTGGCTGCAGCAGTCAGGTGACGTGGGTGTCGTCGACGGCAACCCCTCAAGCGCTGGCCATGTCTACTGCCAGGAGACAGTGTTCACTCAGAGACATGTTCACCAGGACAATGAGAATAATACAGGTCACTATAGTCTTCAAACTCCGGTACAATCAAACGTCGTCTCTGCCTCACCCCTTCACCTATCCTCTCTTCCATCCCAGCCCCCCAGTGGACTGCCACAGCATGGAGCAGCACCCCTAGTGGTGTTTAGAGGTATTCCCTTCCTTAGTCCGCTCCAGTCtcgtagaggaggaggaggagggcagagggGAGTGGAGCGGATTGGGAGAGGGCTCCACTACACCCCTCGACCTATGCTGAATCCCCAACGCAGGGGAACGgggctcctctcctccctcatcccacCTTCAGCTGGGGAACGAGGGATGGGAAGGATGACTAAAGAGGAGAAGGGATCTTTTTTACTTCCGTGTATCAACGTGGGTCGAGGGTTCCAGGCTGAGCTGCCATGTTgtcgagagagggaggaggggtcagGGGCATGGCCAGAAGAATCATCATCCAATGAGAAGTTGCTCTGGAAACCGTGGGAGGAGCTTCAGAGGAGTTCTGTAATTCAGGAAGAAGTGGAGGCGGTGTTGTCTTTGTGTAATTCTAGCTGTCTACCAGGAGGGGGCAGCAACACAGAGCTGGCTCTACactgtctctacctctgtcaTGGAGATGCactggccACGTTGGAGAGATTGTTCTTCTCGAACCCATCAACAGCAGTAGACTACCATTACGCTGgtAGTGATGTGTGGCAGCAGACTGAGAGGTCTCTGTTCAGTAAAGCGTTGAGGACCCACGGCAAAGACTTCTCTCTCATCCAACAAATGgtgcAGACtaagtgtgtgtctcagtgtgtggagTTCTACTATCTCTCGAGGAAACTTCTGGACAAACAGAAAAAACAGAGGGAGCAGGAACGAGGGACGGAGGAACAGACGAGTGTGGTGTCCCTCCCTAAACCTATGGAACAGGTGGTACCAGCCCCGTCATTGGCTACCAGCTTCCCCTGTAAGCAGTGTGGAAAGATGTTCTATAAGATAAAGAGTCGTAACGCCCATATGAAGATCCATAGGCAGCAGCAGGACGACTGGAGACACCCCCCAGGCCTCGTCATCAACCTAGCCCAGAACGTCACCCCCAACCTGGGAACCAATCTACCCCAGCTCCAGGCTTCAGGTCGGGCCTACCTCCCAGgccccatcaacaacaacaacagcaaccacCACACTGGTGGTGCtcacaccatcatcatcaacaacaacaacatcagtgATCCAAACATTCCAAACACCAATACCATGACCAATAGCAACAGTGTCAGTGTCATCGACTCCACCCCTAATCAGAGAGGACacgcccccctcctctctgtccagcAATCGTGGGACTTGTTTCAGTTGAACTCTAATCCTGCTGCAGGGTTCTACTATGACCCGGAAGTGAAAGGAGCCCTGGGGGTCACGGTGGGAGGGGTGAAAGGTCAAGTTCTCTGGCAGTAGAGTTTTGGAATCAGAATGAATAGAACTGACATGTATAGGACTACATTCACATTTTGCACCATGAAAagcatttaaaatatataaatatagtgAGAAATCTGTAAATTATGTTTAATACCTACTTAAATGTTTTCAATTTCAATTTttattaaaattgatttttgtaTCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2014378 lncRNA upstream 459 60631417 ~ 60631953 (+) True G1759120
TU2014394 lncRNA upstream 7709 60623798 ~ 60624703 (+) True G1759136
TU2014391 lncRNA upstream 24918 60607050 ~ 60607494 (+) True G1759133
TU2014390 lncRNA upstream 26443 60605392 ~ 60605969 (+) True G1759132
TU2014388 lncRNA upstream 29235 60602967 ~ 60603177 (+) True G1759130
TU2014400 lncRNA downstream 3499 60657605 ~ 60657989 (+) True G1759141
TU2014402 lncRNA downstream 13589 60667695 ~ 60668314 (+) True G1759143
TU2014404 lncRNA downstream 14297 60668403 ~ 60669783 (+) False G1759144
TU2014405 lncRNA downstream 14297 60668403 ~ 60675726 (+) False G1759144
TU2014406 lncRNA downstream 14297 60668403 ~ 60676575 (+) True G1759144
XM_036958319.1 mRNA upstream 3155 60613390 ~ 60629257 (+) True LOC110500797
XR_005038766.1 mRNA upstream 312702 60319603 ~ 60319710 (+) True LOC118943030
XM_036956529.1 mRNA upstream 324507 60284625 ~ 60307905 (+) True LOC118942814
XM_036958311.1 mRNA upstream 359604 60257181 ~ 60272808 (+) False LOC110500950
XM_036958333.1 mRNA downstream 94900 60749006 ~ 60774137 (+) True LOC118942965
XM_036958334.1 mRNA downstream 124453 60778559 ~ 60779842 (+) True LOC118942966
XM_036958331.1 mRNA downstream 148287 60802393 ~ 60803538 (+) True LOC118942963
XM_036958332.1 mRNA downstream 154379 60808485 ~ 60809684 (+) True LOC118942964
LOC110500905 mRNA downstream 246671 60900777 ~ 60924091 (+) True LOC110500905
TU2013946 other upstream 273061 60358830 ~ 60359351 (+) True G1758786
TU2013992 other upstream 279378 60351646 ~ 60353034 (+) False G1758818
TU2013967 other upstream 305792 60322215 ~ 60326620 (+) False G1758801
TU2014439 other downstream 68052 60722158 ~ 60722472 (+) True G1759168
TU2014559 other downstream 156096 60810202 ~ 60810620 (+) True G1759267
TU2016357 other downstream 2080945 62735051 ~ 62741819 (+) True G1760504
TU2016469 other downstream 2157669 62811775 ~ 62814241 (+) True G1760587
TU2016581 other downstream 2219575 62873681 ~ 62889038 (+) True LOC110500953

Expression Profile