RNA id: TU2014400


Basic Information

Item Value
RNA id TU2014400
length 385
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1759141
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 60657605 ~ 60657989 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatttctgGATGagaagtgtgcccaaagtaaactgcctgttactaaggcccagaagctaggatatgcatatatttggatagaaaacactataaagtttccaaaactgttaaaataatgtctgtgagtataacagaactgatatggcagatgaaaacctgaggaaaatccatccaggaagtgggatatttTTGATTTGGCTACATTTCTATTGAACGCCTATACTGTGTGTAATGggataggacccagattgcagttcctatgccttccactagatgtcaacagtctttagacattgtttcaggcttgtattctgagaaatgaagaagaatgCGATCTTTCTGTCAGTGGACTGTAGAATGAAGCAGAGCTGGTTTGCGTGCGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2014398 lncRNA upstream 11538 60645468 ~ 60646067 (+) True G1759139
TU2014397 lncRNA upstream 17046 60638584 ~ 60640559 (+) True G1759138
TU2014378 lncRNA upstream 25652 60631417 ~ 60631953 (+) True G1759120
TU2014394 lncRNA upstream 32902 60623798 ~ 60624703 (+) True G1759136
TU2014391 lncRNA upstream 50111 60607050 ~ 60607494 (+) True G1759133
TU2014402 lncRNA downstream 9706 60667695 ~ 60668314 (+) True G1759143
TU2014404 lncRNA downstream 10414 60668403 ~ 60669783 (+) False G1759144
TU2014405 lncRNA downstream 10414 60668403 ~ 60675726 (+) False G1759144
TU2014406 lncRNA downstream 10414 60668403 ~ 60676575 (+) True G1759144
TU2014409 lncRNA downstream 22157 60680146 ~ 60680454 (+) True G1759147
XM_036958320.1 mRNA upstream 3499 60632412 ~ 60654106 (+) False LOC110500798
XM_036958321.1 mRNA upstream 3499 60632412 ~ 60654106 (+) False LOC110500798
XM_036958322.1 mRNA upstream 3499 60632412 ~ 60654106 (+) False LOC110500798
XM_036958323.1 mRNA upstream 3499 60632412 ~ 60654106 (+) False LOC110500798
XM_036958324.1 mRNA upstream 3499 60632412 ~ 60654106 (+) False LOC110500798
XM_036958333.1 mRNA downstream 91017 60749006 ~ 60774137 (+) True LOC118942965
XM_036958334.1 mRNA downstream 120570 60778559 ~ 60779842 (+) True LOC118942966
XM_036958331.1 mRNA downstream 144404 60802393 ~ 60803538 (+) True LOC118942963
XM_036958332.1 mRNA downstream 150496 60808485 ~ 60809684 (+) True LOC118942964
LOC110500905 mRNA downstream 242788 60900777 ~ 60924091 (+) True LOC110500905
TU2013946 other upstream 298254 60358830 ~ 60359351 (+) True G1758786
TU2013992 other upstream 304571 60351646 ~ 60353034 (+) False G1758818
TU2013967 other upstream 330985 60322215 ~ 60326620 (+) False G1758801
TU2014439 other downstream 64169 60722158 ~ 60722472 (+) True G1759168
TU2014559 other downstream 152213 60810202 ~ 60810620 (+) True G1759267
TU2016357 other downstream 2077062 62735051 ~ 62741819 (+) True G1760504
TU2016469 other downstream 2153786 62811775 ~ 62814241 (+) True G1760587
TU2016581 other downstream 2215692 62873681 ~ 62889038 (+) True LOC110500953

Expression Profile