RNA id: XM_036958319.1


Basic Information

Item Value
RNA id XM_036958319.1
length 4847
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC110500797
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 60613390 ~ 60629257 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATGCTGTAAGACTTTAGACCGTGTGGAGAGTGGTCGGAACAAGTGGCTGGAAGTAGACATACCTACCTGCCTGGTGCTAACTCAACGGAGTCTATTTTTTAAGCAGGCAAAAAGAAAACCCTCCCGAACATGAGTAAGGACACCGAGGTCGATATGAAGGATGTTGAGTTGAACGAGTTGGACCAGGAGAAACTACCGATGACCGGCGACGGACCGGGGGCTGAGAAGAACGGAAACTTGAAGCAGAAGGAACCGGAGGAGGATGTTAAGTTTACCGGGCTGTCGAAGGAAGAGCTCATGAAAGTCGCTGGCACACCCGGgTGGGTGAGGACACGCTGGGTGCTCCTGGTCTTGTTTTGGTTGGGCTGGGTGGGGATGCTGGCTGGGGCCATAGTGATCATCGTCCAGGCCCCCAGGTGTAAACCCATACCTGAGATGAACTGGTGGAATCAGGGTCCTCTCTATCAGATCGCTGACCTGGACGCCTTCAACCACGACAAGGGAATCAAAGgtgtagTTGAGGTACTGGACAGTCTGAACCAGTTGAAGGTGAAGGGCCTGGTTCTGGGGCCTCTTCACACTGTCCAGCAGGACAAAGCAGACACCTTAGACCTGGTCTCTATGGACCCCAGGgtaggaactgaccaggacctgCTGGTTTTGCTGGACAAGGCCCATAAGAAGGGTATCTCTGTGGTGTTGaatctgacccctaaccctggagCTGACCCCTGGTTCAGTCCTGACCACTTACCTAAAGTACTGGACAAACTCAggGACGCTGCTGAACACTGGCTGGGGATGGGCGTGGACGGGGTGCAGGTGTGCGGCCTCGCTGCTGCCAGCGCCTCTTCTGATTGGTCCAAGTTCCAGGGTGTCGTCCAGGGCAACAGGACGGAGGTGGACGTGAAGAAGAGagcTCTAATAGGAGTGGTTGATGGTCAGGACTACTCTGCCGTCTCTCAACTTCTCAACTCTTCTGGTGTGGATCTGATACTGTCTGATGTCCTTAACAAGGCAAACTCCGGTATCGAGAGAGCGAAGTCCATCCACGGCCTGGTGTCTACCCAGAAACAGAGCTCTTTAGCCTGGGGGCTAGGAGGCAGTTTGGGGAACCATCTGGCTTCAGTGATGGAGAAACCAGACCTGGTACGACTTTACCAACTCATGCTTTTCACCCTGCCTGGAACACCTGTTTTCAACTACGGAGATGAGTTGGGGCTCGTGGACCAGggcTCCACCTCTCCTAAGATGCCGTGGGACACTGAGGAAGAGGTTGCTGCTGAAGGAGCTGTGAAGAACGAGACAGCCGAGgcCCAGAAGACTCATCGTCTGACATGTCGTTCGTGGTTTAAGACCCTCTCTGACCTGAGGGGTAAAGAACGTTCCCTCCTTCATGGGGACTACTtccacctccactcctcctccgcGTCCCTTGCTTTCCTGCGTCTGTGGGACCAGAGCGAACGATACCTGACGGCCGTTAACTGGGGCTCCGCCACCTTAACCATGGCCCTCAACCACACAGaGCTGAGCATCCCGGAGCAGGCTAAAGTGAAGCTTAGTACTGACCCTGAAAACCTGGCTGCGGACAGCTCTGTCTCGCTGGATAAACTGCTGCTGGGACCCGGACAGGCTGTCCTATTGACCTTTCCCTTCGCTTAGGAGGGGCTAGAACAGAGACCAGGACTAGAACAGAGACCAGGACTAGAACAGAGACCAGGACTAGAACAGAGACCAGGACTAGAGCAGAGACCAGGACTAGAGCAGAGACCAGGACTAGAGCAGAGACCAGGACTAGAGCAGAGACCAGGACTAGAGCAGAGACCAGGACTAGAGCAGAGACCAGGACTAGAGCAGAGACCAGGACTAGAGCAGAGACCAGGACTAGAGCAGAGACCAGGACTAGAGCAGAGACCAGGACTAGAGCAGAGACCAGGACTAGAGCAGAGACCAGGACTAGAGCAGAGACCAGGACTAGAACAGAGACCAGAATAAGAAACTACTAAACATAACTTTTACACCTGGAACAAAGGGAGAATGCAGAGAATGTTTTAGATCACATAAAACAAGCAGACGGAATATATAGTATAAACAGCAGTATTTAGCCAGTGCTTAAAAAGTATTAAATGTTAGACCAGAATGACTATTTCCAACTGTTAAAACATTCCAGTTCAGATttgatcaaatgtatttttttggggccattgtttcaaaacattttaaaaggaAGTTCTTTCTAATGTTGTTTTATGACCTCTTGAGTTGAACTGTTGAAGTAGGAAAATATCAGtttgaatttaaaaaatgtattattttttttcttcaatctGTTTATTCCATTCAGTGGAATATAATTGTTATTCAACTTGCTAGTATTGGAGACGATTGCTAGACGTTGTTCTGACTAAAACTTGCTAGTATTGGAGACGATTGCTAGACGTTGTTCTGACTAAAACTTGCTAGTATTGGAGAAGATTGCTAGACATTGTTCTGACTAAAACTTGCTAGTATTGGAGACGATTGCTAGACATTGTTCTGACTAAAACTTGCTAGTATTGGAGACGATTGCTAGACATTGTTCTGACTAAAACTTGCTAGTATTGGAGACGATTGCTAGACGTTGTTCTGACTAAAACTTGCTAGTATTGGAGAAGATTGCTAGACATTGTTCTGACTAAAACTTGCTAGTATTGGAGACGATTGCTAGACATTGTTCTGACTAAAACTTGCTAGTATTGGAGACGATTGCTAGACATTGTTCTGACTAAAACTTGCTAGTATTGGAGACGATTGCTAGACGTTGTTCTGACTAAAACTTGCTAGTATTGGAGACGATTGCTAGACATTGTTCTGACTAAAACTTGCTAGTATTGGAGAAGATTGCTAGACATTGTTCTGACTAAAACTTGCTAGTATTGGAGAAGATTGCTAGACATTGTTCTGACTAAAACTTGCTAGTATTGGAGAAGATTGCTAGACGTTGTTCTGACTAAAACTTGCTAGTATTGGAGACGATTGCTAGACATTGTTCTGACTAAAACTTGCTAGTATTGGAGAAGATTGCTAGACATTGTTCTGACTAAAACTTGCTAGTATTGGAGAAGATTGCTAGACGTTGTTCTGACTAAAACTTGCTAGTATTGGAGACGATTGCTAGACATTGTTCTGACTAAAACTTGCTAGTATTGGAGAAGATTGCTAGACATTGTTCTGACTAAAACTTGCTAGTATTGGAGACGATTGCTAGACGTTGTTCTGACTAAAACTTGCTAGTATTGGAGAAGATTGCTAGACGTTGTTCTGACTAAAACTTGCTAGTATTGGAGACGATTGCTAGACATTGTTCTGACTAAAACTTGCTAGTATTGGAGAAGATTGCTAGACGTTGTTCTGACTAAAACTTGCTAGTATTGGAGACGATTGCTAGACATTGTTCTGACTAAAACTTGCTAGTATTGGAGAAGATTGCTAGACGTTGTTCTGACTAAAACTTGCTAGTATTGGAGACGATTGCTAGACATTGTTCTGACTAAAACTTGCTAGTATTGGAGAAGATTGCTAGACGTTGTTCTGACTAAAACTTGCTAGTATTGGAGACGATTGCTAGACGTTGTTCTGACTAAAACTTGCTAGTATTGGAGACGATTGCTAGACGTTGTTCTGACTAAAACTTGCTAGTATTGGAGACGATTGCTAGACATTGTTCTGACTAAAACTTGCTAGTATTGGAGACGATTGCTAGACGTTGTTCTGACTAAAACTTGCTAGTATTGGAGACGATTGCTAGACATTGTTCTGACTAAAACTTGCTAGTATTGGAGACGATTGCTAGACGTTGTTCTGACTAAAACTTGCTAGTATTGGAGACGATTGCTAGACGTTGTTCTGACTAAAACTTGCTAGTATTGGAGACGATTGCTAGACATTGTTCTGACTAAAACTTGCTAGTATTGGAGACGATTGCTAGACATTGTTCTGACTAAAACTTGCTAGTATTGGAGACGATTGCTAGACGTTGTTCTGACTAAAACTTGCTAGTATTGGAGACGATTGCTAGACGTTGTTCTGACTAAAACTTGCTAGTATTGGAGACGATTGCTAGACGTTGTTCTGACTAAAACTTGCTAGTATTGGAGACGATTGCTAGACGTTGTTCTGACTAAAACTTGCTAGTATTGGAGACGATTGCTAGACGTTGTTCTGACTAAAACTTGCTAGTATTGGAGACGATTGCTAGACATTGTTCTGACTAAAACTTGCTAGTATTGGAGACGATTGCTAGACATTGTTCTGACTAAAACTTGCTAGTATTGGAGACGATTGCTAGACATTGTTCTGACTAAAACTTGCTAGTATTGGAGACGATTGCTAGACGTTGTTCTGACTAAAACTTGCTAGTATTGGAGACGATTGCTAGACATTGTTCTGACTAAAACTTGCTAGTATTGGAGACGATTGCTAGACATTGTTCTGACTAAAACTTGCTAGTATTGGAGACGATTGCTAGACATTGTTCTGACTAAAACTTGAAAGGAGTACAATAAAAGTCCTGTGTAATGTTGCCTGGTGACAATCAAGCATCGACCTTTGTCTCCTTCCTCCTTCTGATGTGTATGTGTTCTATCTGTGGATGCCTCAGAGTGTGTGCACTACTTGTTCtgtttttgagtgtgtgtgtgtgtgtgatattggcCTAATGCCACATGCTTTCCGTTAAGCTCAGGCAGAGGAACATTACAGGTGTGTTAATGTCGGCTCCATGAAACAGCCCAATGTGTGTCTCTCACCTCACGCAGGTGCTCAGAAGATATAAATAAACCACGCTCTTGTTTGTTCATTCCAA

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0043169 cation binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K06519 SLC3A2, MDU1, CD98; solute carrier family 3, member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2014391 lncRNA upstream 5896 60607050 ~ 60607494 (+) True G1759133
TU2014390 lncRNA upstream 7421 60605392 ~ 60605969 (+) True G1759132
TU2014388 lncRNA upstream 10213 60602967 ~ 60603177 (+) True G1759130
TU2014385 lncRNA upstream 22568 60590521 ~ 60590822 (+) True G1759127
TU2014383 lncRNA upstream 41933 60571051 ~ 60571457 (+) True G1759125
TU2014378 lncRNA downstream 2160 60631417 ~ 60631953 (+) True G1759120
TU2014397 lncRNA downstream 9327 60638584 ~ 60640559 (+) True G1759138
TU2014398 lncRNA downstream 16211 60645468 ~ 60646067 (+) True G1759139
TU2014400 lncRNA downstream 28348 60657605 ~ 60657989 (+) True G1759141
TU2014402 lncRNA downstream 38438 60667695 ~ 60668314 (+) True G1759143
XR_005038766.1 mRNA upstream 293680 60319603 ~ 60319710 (+) True LOC118943030
XM_036956529.1 mRNA upstream 305485 60284625 ~ 60307905 (+) True LOC118942814
XM_036958311.1 mRNA upstream 340582 60257181 ~ 60272808 (+) False LOC110500950
XM_036958312.1 mRNA upstream 340582 60257181 ~ 60272808 (+) True LOC110500950
XM_036958313.1 mRNA upstream 341703 60257181 ~ 60271687 (+) False LOC110500950
XM_036958320.1 mRNA downstream 3155 60632412 ~ 60654106 (+) False LOC110500798
XM_036958321.1 mRNA downstream 3155 60632412 ~ 60654106 (+) False LOC110500798
XM_036958322.1 mRNA downstream 3155 60632412 ~ 60654106 (+) False LOC110500798
XM_036958323.1 mRNA downstream 3155 60632412 ~ 60654106 (+) False LOC110500798
XM_036958324.1 mRNA downstream 3155 60632412 ~ 60654106 (+) False LOC110500798
TU2013946 other upstream 254039 60358830 ~ 60359351 (+) True G1758786
TU2013992 other upstream 260356 60351646 ~ 60353034 (+) False G1758818
TU2013967 other upstream 286770 60322215 ~ 60326620 (+) False G1758801
TU2013968 other upstream 286770 60322215 ~ 60326620 (+) False G1758801
TU2013964 other upstream 286770 60322514 ~ 60326620 (+) True G1758801
TU2014439 other downstream 92901 60722158 ~ 60722472 (+) True G1759168
TU2014559 other downstream 180945 60810202 ~ 60810620 (+) True G1759267
TU2016357 other downstream 2105794 62735051 ~ 62741819 (+) True G1760504
TU2016469 other downstream 2182518 62811775 ~ 62814241 (+) True G1760587
TU2016581 other downstream 2244424 62873681 ~ 62889038 (+) True LOC110500953

Expression Profile