RNA id: TU2013949


Basic Information

Item Value
RNA id TU2013949
length 656
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1758788
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 60344422 ~ 60345077 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagacaatgaggagggagagcatcaaggagaggggaggagacaatgagaagagagattgagagcatcagggagaggagaggagagaatgagaagagTGAAGGAGAGCatcagggaggaggggggagagaatgagaagggAGAGCatcagggagaggggaggggggaggagacaatgaggagggagagcatcagggagaggggaggagacaatgagaagagagaaggagagcatcagggaggagggagaagacaatgagaagagagaaggagagcatcAGCTATACATTTTTCAGCCAATAAATAAAGGCCCAATAGTTTGCCTGAGATAAATTGTTGAGCACACTATCAAAGAAGAAACTAAACAAACACATTTGGTTCCTTAAAAGTTGTGGGAATGTATGTTTTCGGTTTGACGTTGGTTGCGGGAACGAAGGCCTACGTTTCCTTACCTGTAAAATGGGATTATTCTTTTTTTGTTTTAAGAGTAGAAGTGAACATTTCTtctgttctgggaacctttatgttttaggttgcagggaggatctgagaacgttttactctgaTTCCTTGAAAGTGTCACTGGGAGGTTATTTTAGAGCTCTTAGAATGgaaattgtagtttttttttttcgaaatgtgttttaataaagtTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2013969 lncRNA upstream 15168 60317478 ~ 60329254 (+) False G1758802
TU2013971 lncRNA upstream 15168 60317751 ~ 60329254 (+) False G1758802
TU2013970 lncRNA upstream 15168 60318091 ~ 60329254 (+) True G1758802
TU2013939 lncRNA upstream 29751 60313673 ~ 60314671 (+) True G1758782
TU2013941 lncRNA upstream 30895 60312231 ~ 60313527 (+) False G1758784
TU2013993 lncRNA downstream 6569 60351646 ~ 60353034 (+) False G1758818
TU2013995 lncRNA downstream 6569 60351646 ~ 60353034 (+) False G1758818
TU2013990 lncRNA downstream 7535 60352612 ~ 60353034 (+) False G1758818
TU2013991 lncRNA downstream 7535 60352612 ~ 60353034 (+) False G1758818
TU2013994 lncRNA downstream 7535 60352612 ~ 60353092 (+) True G1758818
XR_005038766.1 mRNA upstream 24712 60319603 ~ 60319710 (+) True LOC118943030
XM_036956529.1 mRNA upstream 36517 60284625 ~ 60307905 (+) True LOC118942814
XM_036958311.1 mRNA upstream 71614 60257181 ~ 60272808 (+) False LOC110500950
XM_036958312.1 mRNA upstream 71614 60257181 ~ 60272808 (+) True LOC110500950
XM_036958313.1 mRNA upstream 72735 60257181 ~ 60271687 (+) False LOC110500950
XM_036958319.1 mRNA downstream 268313 60613390 ~ 60629257 (+) True LOC110500797
XM_036958320.1 mRNA downstream 287335 60632412 ~ 60654106 (+) False LOC110500798
XM_036958321.1 mRNA downstream 287335 60632412 ~ 60654106 (+) False LOC110500798
XM_036958322.1 mRNA downstream 287335 60632412 ~ 60654106 (+) False LOC110500798
XM_036958323.1 mRNA downstream 287335 60632412 ~ 60654106 (+) False LOC110500798
TU2013967 other upstream 17802 60322215 ~ 60326620 (+) False G1758801
TU2013968 other upstream 17802 60322215 ~ 60326620 (+) False G1758801
TU2013964 other upstream 17802 60322514 ~ 60326620 (+) True G1758801
TU2012464 other upstream 1657899 58683137 ~ 58686523 (+) True G1757578
TU2012159 other upstream 1934343 58405284 ~ 58410079 (+) False rwdd
TU2013992 other downstream 6569 60351646 ~ 60353034 (+) False G1758818
TU2013946 other downstream 13753 60358830 ~ 60359351 (+) True G1758786
TU2014439 other downstream 377081 60722158 ~ 60722472 (+) True G1759168
TU2014559 other downstream 465125 60810202 ~ 60810620 (+) True G1759267
TU2016357 other downstream 2389974 62735051 ~ 62741819 (+) True G1760504

Expression Profile