RNA id: TU2013993


Basic Information

Item Value
RNA id TU2013993
length 1289
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G1758818
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 60351646 ~ 60353092 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcttaacaacaacaaaacaacagtaCAGTAAACAAGTAAATAAAAGCATATTCAATATTATGAATGAATGTATCGAATAATTTGACCATAGAGCCATTTCCAGAGATCTGTATGGTTTTGGACTGGATAGAGCAGATCTGGGTTCAAACAGACATAGTCAGAGGAATAAACTTGGATTTAACCTGtttttagcatggacattgccagTGAGGGGattttccaccattttaaagtagtcaactgggtggggattctaATGGGTTGTGAGCAATCAGCCAATGATCAAACCATTGTCTTCTGTTTTCAAATTTGGTGCcatgtttttttaaaaatgtttttaaatgacttatatatatatctatatcaccGCCATCTTGTGGCCATGATAAATGAATGACACATGATTTGGTTTTAGGACTCCAGCACTGCAGGTGGAGGTAAATCACAAATATTAGCATAAAAATGGAGATAGTGTCAATGGCGCTGGCCATTCTGTCACAGACaccataatggcacagatacaaaagACGAGAACTCTCTCCAACTCTATGGCCTCACATGCTAATTGAAATCATTACAAAAGACGAGAACTCTCTCCAACTCTATGGCCTCACATGCTAATTGAAATCATTACAAATACTTTCTGTGTTTTGAGTTTACCAGTTGCAATGGAACTAATATAATAGTCTGGCAGTCCAAGcgagcaaaaaaacaaaacaaacgctaaatactatttgaacccagatgTGGTATTGAGTAACACAGCCAATAAGAGCAAGCGAACTATTAGCGacagacaaccagagacattcagGGCAGAACACATAGTGCAGTAGTTAATAACAGTATAGCATCTGTATACCTCTCCATGAAAACACGTTTACTATTAGTCcaatgtgtgtatttatactactgacATATTTGACATTTCATTCGTCAGCTCATTTTGTGTGTTcttgcatcagtgtgtgtgtgtgtgtgtgttccgtgaGTGTGTGTCCCTtgcgcactgtgtgtgtgttttctgtgtgtgtgtgtcccttgcggtgtgtgtgtgtgtgtgtgtgtgtcccttgcgcattgtgtgtgtgttttctgtgtgtgtgtgtgtcccttgcggtgtgtgtgtgtgtgtgtgtgtgtgtcccttgcgcattgtgtgtgtgttttctgtgtgtgtgtgtgtgtcctctcctcaGCCCATTGGACATCCAGGCAGTCTAAAACTATCTGGAACAGGGCTGTCTAGTTTACAGATAATCTTGTAGATGGATTTCTTCCAGCAGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2013949 lncRNA upstream 6569 60344422 ~ 60345077 (+) True G1758788
TU2013969 lncRNA upstream 22392 60317478 ~ 60329254 (+) False G1758802
TU2013971 lncRNA upstream 22392 60317751 ~ 60329254 (+) False G1758802
TU2013970 lncRNA upstream 22392 60318091 ~ 60329254 (+) True G1758802
TU2013939 lncRNA upstream 36975 60313673 ~ 60314671 (+) True G1758782
TU2013947 lncRNA downstream 5315 60358349 ~ 60358745 (+) False G1758786
TU2014250 lncRNA downstream 46984 60400018 ~ 60429043 (+) True G1759007
TU2014300 lncRNA downstream 117612 60470646 ~ 60472386 (+) True G1759051
TU2014299 lncRNA downstream 120798 60473832 ~ 60482499 (+) True G1759050
TU2014298 lncRNA downstream 123168 60476202 ~ 60483619 (+) True G1759049
XR_005038766.1 mRNA upstream 31936 60319603 ~ 60319710 (+) True LOC118943030
XM_036956529.1 mRNA upstream 43741 60284625 ~ 60307905 (+) True LOC118942814
XM_036958311.1 mRNA upstream 78838 60257181 ~ 60272808 (+) False LOC110500950
XM_036958312.1 mRNA upstream 78838 60257181 ~ 60272808 (+) True LOC110500950
XM_036958313.1 mRNA upstream 79959 60257181 ~ 60271687 (+) False LOC110500950
XM_036958319.1 mRNA downstream 260356 60613390 ~ 60629257 (+) True LOC110500797
XM_036958320.1 mRNA downstream 279378 60632412 ~ 60654106 (+) False LOC110500798
XM_036958321.1 mRNA downstream 279378 60632412 ~ 60654106 (+) False LOC110500798
XM_036958322.1 mRNA downstream 279378 60632412 ~ 60654106 (+) False LOC110500798
XM_036958323.1 mRNA downstream 279378 60632412 ~ 60654106 (+) False LOC110500798
TU2013967 other upstream 25026 60322215 ~ 60326620 (+) False G1758801
TU2013968 other upstream 25026 60322215 ~ 60326620 (+) False G1758801
TU2013964 other upstream 25026 60322514 ~ 60326620 (+) True G1758801
TU2012464 other upstream 1665123 58683137 ~ 58686523 (+) True G1757578
TU2012159 other upstream 1941567 58405284 ~ 58410079 (+) False rwdd
TU2013946 other downstream 5796 60358830 ~ 60359351 (+) True G1758786
TU2014439 other downstream 369124 60722158 ~ 60722472 (+) True G1759168
TU2014559 other downstream 457168 60810202 ~ 60810620 (+) True G1759267
TU2016357 other downstream 2382017 62735051 ~ 62741819 (+) True G1760504
TU2016469 other downstream 2458741 62811775 ~ 62814241 (+) True G1760587

Expression Profile