RNA id: TU2013941


Basic Information

Item Value
RNA id TU2013941
length 1274
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G1758784
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 60312231 ~ 60313527 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtacatgAGAAATAGAgttctagggaatagggttctagggaatagggtacatgAGGAATAGGgttctagggaatagggttctagggAAAAGGGTACATGAGGAATATGgttctagggaatagggttatagggaaaagggttctagggaatagggtacatgAGGAATAGGGTTCTAGGGAATAGGCTACATGAGGAATAGGgttctagggaatagggttatagggaatagggtacattAGGAATAGGGTTCTAGGGAACAGGGTTCTAGGGAATAGGCTACATGAGGAATAGGgttctagggaatagggtacatgAGGAATAGGgttctagggaatagggtgcatgagGAATAGGGTTTAGGGTACCATTGACCTGGTCTTTGTAATGTCTCTGATGGGTTCCAGTCATTGTAACAGTCCAGTGCTGTCCACATCACTTTTTTGTCTAAACATGAGGATGTGTTAGCCAGGATGACACCGAGGTGTGTCCGTTCTGAGGGGAGAAAACGGGGCCATTTGCTGTTATGGCTGAAAGAGTTTGGCCAACTTGGATGAAGACTTTGAGTTTTTTAACGGGCACCATGTCAGACCCCAAAAAGCACCAAGTCAAAAAAATATTCCTCCTGATATTTAAACTGTTATTATTCTGCTCTATATAGGATACTATTAATGACAGTGctgttattactactactactggtcattACCATCCTGAATATTACTTCTACTACTGGTCATTACCATCCTGGATATTACTTCTACTACTGGTCATTACCATCCTGAATATTACTTCTACTTCTGGTCATTACCATCCTGGATATTACTTCTACTACTGGTCATTACCATCCTGAATATTACTTCTACTACTGGTCATTACCATCCTGGATATTACTTCTACTACTGGTCATTACCATCCTGGATATTACTTCTACTACTGGTCATTACCATCCTGAATATTACTTCTACTACTGGTCATTACCATCCTGGATATTACTTCTACTACTGGTCATTACCATCCTGGATATTACTTATACTACTGGTCATTACCATCCTGGATATTACTTCTACTACTGGTCATTACCATCCTGGATATTACTTCTACTTCTGGTCATTACCATCCTGGATATTACTTCTACTACTGGTCATTACCATCCTGGATATTACTTCTACTTCTGGTCATTACCATCCTGGATATTACTTCTACTACTGGTCATTACCATCCTAGAATACAGGTAACAGACAGATTATCATCTGTATTTTAAAATGACCAGAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2013901 lncRNA upstream 95254 60216582 ~ 60216977 (+) True G1758746
TU2013811 lncRNA upstream 124614 60130890 ~ 60187617 (+) False G1758666
TU2013810 lncRNA upstream 179510 60130970 ~ 60132721 (+) True G1758666
TU2013816 lncRNA upstream 188270 60005761 ~ 60123961 (+) True LOC110500904
TU2013815 lncRNA upstream 256794 60052344 ~ 60055437 (+) True LOC110500789
TU2013939 lncRNA downstream 146 60313673 ~ 60314671 (+) True G1758782
TU2013969 lncRNA downstream 3951 60317478 ~ 60329254 (+) False G1758802
TU2013971 lncRNA downstream 4224 60317751 ~ 60329254 (+) False G1758802
TU2013970 lncRNA downstream 4564 60318091 ~ 60329254 (+) True G1758802
TU2013949 lncRNA downstream 30895 60344422 ~ 60345077 (+) True G1758788
XM_036956529.1 mRNA upstream 4326 60284625 ~ 60307905 (+) True LOC118942814
XM_036958311.1 mRNA upstream 39423 60257181 ~ 60272808 (+) False LOC110500950
XM_036958312.1 mRNA upstream 39423 60257181 ~ 60272808 (+) True LOC110500950
XM_036958313.1 mRNA upstream 40544 60257181 ~ 60271687 (+) False LOC110500950
XM_036958309.1 mRNA upstream 79083 60189515 ~ 60233148 (+) False si:dkey-9k7.3
XR_005038766.1 mRNA downstream 6076 60319603 ~ 60319710 (+) True LOC118943030
XM_036958319.1 mRNA downstream 299863 60613390 ~ 60629257 (+) True LOC110500797
XM_036958320.1 mRNA downstream 318885 60632412 ~ 60654106 (+) False LOC110500798
XM_036958321.1 mRNA downstream 318885 60632412 ~ 60654106 (+) False LOC110500798
XM_036958322.1 mRNA downstream 318885 60632412 ~ 60654106 (+) False LOC110500798
TU2012464 other upstream 1625708 58683137 ~ 58686523 (+) True G1757578
TU2012159 other upstream 1902152 58405284 ~ 58410079 (+) False rwdd
TU2011526 other upstream 2383987 57926480 ~ 57928244 (+) True G1756789
TU2010154 other upstream 3517657 56793731 ~ 56794574 (+) True G1755570
TU2009701 other upstream 3924609 56386407 ~ 56387622 (+) True G1755158
TU2013967 other downstream 8688 60322215 ~ 60326620 (+) False G1758801
TU2013968 other downstream 8688 60322215 ~ 60326620 (+) False G1758801
TU2013964 other downstream 8987 60322514 ~ 60326620 (+) True G1758801
TU2013992 other downstream 38119 60351646 ~ 60353034 (+) False G1758818
TU2013946 other downstream 45303 60358830 ~ 60359351 (+) True G1758786

Expression Profile