RNA id: TU2013820


Basic Information

Item Value
RNA id TU2013820
length 220
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id G1758673
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 60016248 ~ 60021291 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccactacgtCCGTCACGGTTTCATCAACAACAACTGAtgaacccactacaaccatcactgagTCAACaaaaacaactggtgaacccacaagAACAGTCACTGTGgtgtcaacaacaactggtgaacccactacaactatcactgagtcatcatcaacaactggtgaacccactacaactataactgagtcatcatcaacaactggtgaacccacaacaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2013807 lncRNA upstream 10582 60005433 ~ 60005666 (+) True G1758665
TU2013607 lncRNA upstream 57133 59957823 ~ 59959115 (+) False G1758526
TU2013608 lncRNA upstream 57133 59957823 ~ 59959115 (+) True G1758526
TU2013646 lncRNA upstream 66024 59949980 ~ 59950224 (+) True G1758551
TU2013636 lncRNA upstream 84011 59931206 ~ 59932237 (+) True G1758544
TU2013815 lncRNA downstream 31053 60052344 ~ 60055437 (+) True LOC110500789
TU2013811 lncRNA downstream 109599 60130890 ~ 60187617 (+) False G1758666
TU2013810 lncRNA downstream 109679 60130970 ~ 60132721 (+) True G1758666
TU2013901 lncRNA downstream 195291 60216582 ~ 60216977 (+) True G1758746
TU2013941 lncRNA downstream 290940 60312231 ~ 60313527 (+) False G1758784
XM_036958301.1 mRNA upstream 121662 59886153 ~ 59894586 (+) False LOC110500791
XM_036958302.1 mRNA upstream 121662 59886155 ~ 59894586 (+) False LOC110500791
XM_036958303.1 mRNA upstream 121662 59886714 ~ 59894586 (+) True LOC110500791
trnay-gua-289 mRNA upstream 155794 59860368 ~ 59860454 (+) True trnay-gua-289
trnay-gua-288 mRNA upstream 156470 59859692 ~ 59859778 (+) True trnay-gua-288
XM_036958304.1 mRNA downstream 14795 60036086 ~ 60055603 (+) False LOC110500789
XR_005038676.1 mRNA downstream 48430 60069721 ~ 60083038 (+) False LOC110500904
XM_036956528.1 mRNA downstream 64749 60086040 ~ 60090150 (+) True LOC118942813
XM_036958305.1 mRNA downstream 68602 60089893 ~ 60110374 (+) False LOC118942961
XM_036958307.1 mRNA downstream 68602 60089893 ~ 60110374 (+) False LOC118942961
TU2012464 other upstream 1329725 58683137 ~ 58686523 (+) True G1757578
TU2012159 other upstream 1606169 58405284 ~ 58410079 (+) False rwdd
TU2011526 other upstream 2088004 57926480 ~ 57928244 (+) True G1756789
TU2010154 other upstream 3221674 56793731 ~ 56794574 (+) True G1755570
TU2009701 other upstream 3628626 56386407 ~ 56387622 (+) True G1755158
TU2013967 other downstream 300924 60322215 ~ 60326620 (+) False G1758801
TU2013968 other downstream 300924 60322215 ~ 60326620 (+) False G1758801
TU2013964 other downstream 301223 60322514 ~ 60326620 (+) True G1758801
TU2013992 other downstream 330355 60351646 ~ 60353034 (+) False G1758818
TU2013946 other downstream 337539 60358830 ~ 60359351 (+) True G1758786

Expression Profile