G1736154 (ap1s1)


Basic Information

Item Value
gene id G1736154
gene name ap1s1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 39340638 ~ 39362957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1988269
TCCTTTCTAATGgcattttattttcattataaAATTACATTCACACGATTCCCTTTGATAATatgtctacgtcccaaatggtacccttctctctttacagtgcactacttgaCCAGAACCCTGGTCAAAGCAAAGATTGCacactataaaaggaatagggtgccatgacTGGACCGTAGTTCAATAGTAATTTATCACATGCCACCCACCCCTCATGCTGGATCCCAAATGAATAAAACCCTACACACACCCCTTTTGGAGTCCCTGAAAAAACGTGAATCAAAATATCTCCTCATTTCTTATTCGGCGCAGTTCCAATAATCCACACTAGCGCACTACTAATAATGAAGCAATAGTTCTGTCCCATTGACCATGCTAGTATACCACTTTGAATGGAGCAATATATTGGGCATGCATCCAAAGGCttcatcccaaacggcaccctgttcCATATTTAgggcctctggtcaaaagaacTACACTAAACAGctggtgtcccaaatggcaccctaagtGGTACGCTAGTGTGGATATCGGAATGTAGCCTATGTATTGATACTAATTAGAGTGAAGTAATGTATTGGGAATGCACACTAGCAAGTAGTACACTAGTATAAATGTTGAAACGTATCTTATTTAAATCAAAAAGCTAAAGTCAGGTAATAAGAATGCATGTCTACAGTCTGAAGCCAAACTCTCTTCTAGTTGCACTTTATTCCTATTGGTCTATTCCCTCTTGTTGCAGACACAAACATTATTACTCTTTGGAAAGTGGGTATTTGATCGGCGTAAAATGTACTACATTTAATGTGTGTGATGTTATAGGAATGGTAGGTAGCTAGGTCCATTATTTAAAAAGTCACGTGTATGTCAAAGTAGTTGGTTTGCCTTTTGTTGTACTTTGCTGCTCAAAAAcaacactctccctctctgcctatATTTTTGTGCCCTGGGTTAGTCTCATctgaatcatcatcatcactacattGCATACTATGACATTGAGCCCTTTCCACATTCATGCTAGCACAGCCACACACAGGCTAAAAGATCACATCAAACTTCCCCATAGGTTACTTGCTCGAtacgcaagagagagagagggggttgagagATGGAggaaatcgagagagagagaaaaacggtTGCGGAATAGAACACAGAAATAGAATTCTAAATTCTATGGAATTCTGGATGGAACCAGAACTTGGGAAGAATCAATCTTCAGATTGACATAAATGGGAATGATAACCCTACAACATATCCTACGGGTTCAACAGAACTCACCAATGCAGACAATCAATGTGGTCCCTTAAAAACAGCAAACGTATTATATTATTCTCATAACGTGTGGTACATATACAAAATATTGGACGACCATTAATTTAAAAGCAAATCCCTGTCCCcttcaaattgcacatcctaatCTGATAAAACGTAATCTGTTGgggaaaatgtttgtttttatttcatcACCTGctaaaaaaatgaaaagcattAAGACACATTCTGACCTGCCTCTGGAGGGAAAGTTCCAAGGTCAAATCAGAGCAGGGAccaaatactatttcaaatacTTCAAACTGAGCTTGATTGAGCGTCCTGGCAGAACGGAACCAATCCATGCAGGCTAAAGCAAAACGCTAGAAGTACATGAACAATTTCAGATAGTATTTGATCCCAAGTCTGGGTCATACAACATTAGTAGTAGCTAAATCCTTCGGCCAAAAGTGGCACCATTTTCACAGAGCTAATATAAATAGGGCGTGGATCATCATCATGATAATACACAACAATGTCAGCAATGTCTGGAATTCAGTACCCAAACGTCAACGTGTGAATTTCAATTGACACCCTATTTTTACTTAAAAAAGGTGCACTTCTTTTGTGCCCtagagtactatatagggaatagggtgccacttgagaCACACCTTAGATAAGATTCCACCCCAGCCTTTACCCAAAGTCCTCCGTCTCTTCGCCTGTCTGTTGCCTGATTAAAAAGTGCTGTGATCAGAGTACCCTGCTGTCACTACGCCAGGCCCATCTCCTCTAGAACACTTCTCGGAGACTCGTCCTCCTCCTGTAGTAGGTCGGCCTGTTCGATGGCCTTGAGAACACTCTTCTTGGACGTGTCTTGGATCTCCCCCCCCATCAGAAACTCATCCAGTATAAAGTAGGCCTTCTCAAAGTTAAAGATGATAATCTTGAGGTCCCTCCACTCCAGGAAGCTGCACATCTTGGGCTTGCGGGCCAGCACCACCTGCATGAGCTCCCTCACCATCTTCTTCTTGTCCCTCTCGGCCGTGGCCGTGTACCACTTCTGGAGACGCAGCTTCCCCTGCCGACTGAACAGCAACATGAAACGCATCATTTTATCAGGCTCACAACGCAAATATTAACTTGGATCTTCGTATATGAATTACTTGATTTTCCTTTTCGTTTTAAACACAGCAAACGTCAACATTCCATGTCTGTTTCAGAATACTACGGCTCGAGCGAGCAACTCATTCAACCAGCTAGCTAGTAGGAGCGATTCCGGTGACAGACGTCAGCTGTTCCCCTCCTCAGTGAACATGCGCATTGCGCATTTTGAGGCAACCGGTAAAATCAGTTTCGTAACCAAGCCAACCGAGGCGAACTCGCTTGATCTACTAGATCTATTTCAAACACTTTCATAACTAAAACTAAACATGTA
>TU1988270
TCCTTTCTAATGgcattttattttcattataaAATTACATTCACACGATTCCCTTTGATAATatgtctacgtcccaaatggtacccttctctctttacagtgcactacttgaCCAGAACCCTGGTCAAAGCAAAGATTGCacactataaaaggaatagggtgccatgacTGGACCGTAGTTCAATAGTAATTTATCACATGCCACCCACCCCTCATGCTGGATCCCAAATGAATAAAACCCTACACACACCCCTTTTGGAGTCCCTGAAAAAACGTGAATCAAAATATCTCCTCATTTCTTATTCGGCGCAGTTCCAATAATCCACACTAGCGCACTACTAATAATGAAGCAATAGTTCTGTCCCATTGACCATGCTAGTATACCACTTTGAATGGAGCAATATATTGGGCATGCATCCAAAGGCttcatcccaaacggcaccctgttcCATATTTAgggcctctggtcaaaagaacTACACTAAACAGctggtgtcccaaatggcaccctaagtGGTACGCTAGTGTGGATATCGGAATGTAGCCTATGTATTGATACTAATTAGAGTGAAGTAATGTATTGGGAATGCACACTAGCAAGTAGTACACTAGTATAAATGTTGAAACGTATCTTATTTAAATCAAAAAGCTAAAGTCAGGTAATAAGAATGCATGTCTACAGTCTGAAGCCAAACTCTCTTCTAGTTGCACTTTATTCCTATTGGTCTATTCCCTCTTGTTGCAGACACAAACATTATTACTCTTTGGAAAGTGGGTATTTGATCGGCGTAAAATGTACTACATTTAATGTGTGTGATGTTATAGGAATGGTAGGTAGCTAGGTCCATTATTTAAAAAGTCACGTGTATGTCAAAGTAGTTGGTTTGCCTTTTGTTGTACTTTGCTGCTCAAAAAcaacactctccctctctgcctatATTTTTGTGCCCTGGGTTAGTCTCATctgaatcatcatcatcactacattGCATACTATGACATTGAGCCCTTTCCACATTCATGCTAGCACAGCCACACACAGGCTAAAAGATCACATCAAACTTCCCCATAGGTTACTTGCTCGAtacgcaagagagagagagggggttgagagATGGAggaaatcgagagagagagaaaaacggtTGCGGAATAGAACACAGAAATAGAATTCTAAATTCTATGGAATTCTGGATGGAACCAGAACTTGGGAAGAATCAATCTTCAGATTGACATAAATGGGAATGATAACCCTACAACATATCCTACGGGTTCAACAGAACTCACCAATGCAGACAATCAATGTGGTCCCTTAAAAACAGCAAACGTATTATATTATTCTCATAACGTGTGGTACATATACAAAATATTGGACGACCATTAATTTAAAAGCAAATCCCTGTCCCcttcaaattgcacatcctaatCTGATAAAACGTAATCTGTTGgggaaaatgtttgtttttatttcatcACCTGctaaaaaaatgaaaagcattAAGACACATTCTGACCTGCCTCTGGAGGGAAAGTTCCAAGGTCAAATCAGAGCAGGGAccaaatactatttcaaatacTTCAAACTGAGCTTGATTGAGCGTCCTGGCAGAACGGAACCAATCCATGCAGGCTAAAGCAAAACGCTAGAAGTACATGAACAATTTCAGATAGTATTTGATCCCAAGTCTGGGTCATACAACATTAGTAGTAGCTAAATCCTTCGGCCAAAAGTGGCACCATTTTCACAGAGCTAATATAAATAGGGCGTGGATCATCATCATGATAATACACAACAATGTCAGCAATGTCTGGAATTCAGTACCCAAACGTCAACGTGTGAATTTCAATTGACACCCTATTTTTACTTAAAAAAGGTGCACTTCTTTTGTGCCCtagagtactatatagggaatagggtgccacttgagaCACACCTTAGATAAGATTCCACCCTGTTGCACATGGAACCCAAAGTCCTCCGTCTCTTCGCCTGTCTGTTGCCTGATTAAAAAGTGCTGTGATCAGAGTACCCTGCTGTCACTACGCCAGGCCCATCTCCTCTAGAACACTTCTCGGAGACTCGTCCTCCTCCTGTAGTAGGTCGGCCTGTTCGATGGCCTTGAGAACACTCTTCTTGGACGTGTCTTGGATCTCCCCCCCCATCAGAAACTCATCCAGTATAAAGTAGGCCTTCTCAAAGTTAAAGATGATATCCAGCTCACATACCTgccagggcacacacacacacacacagacagggagcaatcagaatcacctttatttgccaattaCATTTACATATATCAGGAATTTGACTTGGTAAAATGGTGCCAACAGCAATAGACAAAATAGACAAGAGGAATTGACACAGTCtacgtacagtatatacaggaag
>TU1988271
TCCTTTCTAATGgcattttattttcattataaAATTACATTCACACGATTCCCTTTGATAATatgtctacgtcccaaatggtacccttctctctttacagtgcactacttgaCCAGAACCCTGGTCAAAGCAAAGATTGCacactataaaaggaatagggtgccatgacTGGACCGTAGTTCAATAGTAATTTATCACATGCCACCCACCCCTCATGCTGGATCCCAAATGAATAAAACCCTACACACACCCCTTTTGGAGTCCCTGAAAAAACGTGAATCAAAATATCTCCTCATTTCTTATTCGGCGCAGTTCCAATAATCCACACTAGCGCACTACTAATAATGAAGCAATAGTTCTGTCCCATTGACCATGCTAGTATACCACTTTGAATGGAGCAATATATTGGGCATGCATCCAAAGGCttcatcccaaacggcaccctgttcCATATTTAgggcctctggtcaaaagaacTACACTAAACAGctggtgtcccaaatggcaccctaagtGGTACGCTAGTGTGGATATCGGAATGTAGCCTATGTATTGATACTAATTAGAGTGAAGTAATGTATTGGGAATGCACACTAGCAAGTAGTACACTAGTATAAATGTTGAAACGTATCTTATTTAAATCAAAAAGCTAAAGTCAGGTAATAAGAATGCATGTCTACAGTCTGAAGCCAAACTCTCTTCTAGTTGCACTTTATTCCTATTGGTCTATTCCCTCTTGTTGCAGACACAAACATTATTACTCTTTGGAAAGTGGGTATTTGATCGGCGTAAAATGTACTACATTTAATGTGTGTGATGTTATAGGAATGGTAGGTAGCTAGGTCCATTATTTAAAAAGTCACGTGTATGTCAAAGTAGTTGGTTTGCCTTTTGTTGTACTTTGCTGCTCAAAAAcaacactctccctctctgcctatATTTTTGTGCCCTGGGTTAGTCTCATctgaatcatcatcatcactacattGCATACTATGACATTGAGCCCTTTCCACATTCATGCTAGCACAGCCACACACAGGCTAAAAGATCACATCAAACTTCCCCATAGGTTACTTGCTCGAtacgcaagagagagagagggggttgagagATGGAggaaatcgagagagagagaaaaacggtTGCGGAATAGAACACAGAAATAGAATTCTAAATTCTATGGAATTCTGGATGGAACCAGAACTTGGGAAGAATCAATCTTCAGATTGACATAAATGGGAATGATAACCCTACAACATATCCTACGGGTTCAACAGAACTCACCAATGCAGACAATCAATGTGGTCCCTTAAAAACAGCAAACGTATTATATTATTCTCATAACGTGTGGTACATATACAAAATATTGGACGACCATTAATTTAAAAGCAAATCCCTGTCCCcttcaaattgcacatcctaatCTGATAAAACGTAATCTGTTGgggaaaatgtttgtttttatttcatcACCTGctaaaaaaatgaaaagcattAAGACACATTCTGACCTGCCTCTGGAGGGAAAGTTCCAAGGTCAAATCAGAGCAGGGAccaaatactatttcaaatacTTCAAACTGAGCTTGATTGAGCGTCCTGGCAGAACGGAACCAATCCATGCAGGCTAAAGCAAAACGCTAGAAGTACATGAACAATTTCAGATAGTATTTGATCCCAAGTCTGGGTCATACAACATTAGTAGTAGCTAAATCCTTCGGCCAAAAGTGGCACCATTTTCACAGAGCTAATATAAATAGGGCGTGGATCATCATCATGATAATACACAACAATGTCAGCAATGTCTGGAATTCAGTACCCAAACGTCAACGTGTGAATTTCAATTGACACCCTATTTTTACTTAAAAAAGGTGCACTTCTTTTGTGCCCtagagtactatatagggaatagggtgccacttgagaCACACCTTAGATAAGATTCCACCCCAGCCTTTACCCAAAGTCCTCCGTCTCTTCGCCTGTCTGTTGCCTGATTAAAAAGTGCTGTGATCAGAGTACCCTGCTGTCACTACGCCAGGCCCATCTCCTCTAGAACACTTCTCGGAGACTCGTCCTACCTCCTGTAGTAGGTCGGCCTGTTCGATGGCCTTGAGAACACTCTTCTTGGACGTGTCTTGGATCTCCCCCCCCATCAGAAACTCATCCAGTATAAAGTAGGCCTTCTCAAAGTTAAAGATGATATCCAGCTCACATACGCTGCCGAAGTACTTATCCAGCAGCTCTACGAAGCGGTGGATGACCTCTAGAGTGATGAGTTCGTTGTCCTGCTCCTCCACCGCACAGCAAAAATACAGACTGGCATACCTatagagcgcacacacacacacacacacacacacaccgtattaGTGCAAACAGCATGCAGAGGCGGAATGGAAGGAAGGAACCCAGAAAACCCCCACACTGTCTTTGGGTTATTGAGGTTCAACACACCCACACCTTCTTCATTGAGGTTCAGCTCAGAACTAAAAAGGGGGAAATCCATGGAGCTCCTGCCAGTCAGTAACCCAGGGCCATGTTCTGTAGCCAAACGTAGATAGAATGCCACAAATAGAGGGCATGCTTCTTCTGCAAAGCATATTTC

Function

symbol description
ap1s1 Acts upstream of or within extracellular matrix organization and nervous system development. Located in perinuclear region of cytoplasm and plasma membrane. Is expressed in several structures, including hatching gland; nervous system; polster; pronephric duct; and solid lens vesicle. Human ortholog(s) of this gene implicated in MEDNIK syndrome. Orthologous to human AP1S1 (adaptor related protein complex 1 subunit sigma 1).

NR:

description
AP-1 complex subunit sigma-1A-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1988269 False 2701 lncRNA 0.42 6 39340638 39362957
TU1988270 False 2395 lncRNA 0.41 4 39340638 39343652
TU1988271 True 2611 lncRNA 0.42 5 39340638 39347163

Neighbor

gene id symbol gene type direction distance location
LOC110500364 LOC106608946 coding upstream 8730 39322865 ~ 39331908 (+)
nat16l LOC106608945 coding upstream 84041 39245831 ~ 39256597 (+)
LOC110500362 LOC106608944 coding upstream 102721 39228648 ~ 39237917 (+)
nat16 LOC106608942 coding upstream 129603 39179147 ~ 39211035 (+)
LOC118942927 NA coding upstream 186292 39138542 ~ 39154522 (+)
zanl LOC106608949 coding downstream 57173 39420130 ~ 39453254 (+)
trnaw-cca-56 NA coding downstream 207699 39570656 ~ 39570727 (+)
mpdu1b LOC106608952 coding downstream 232210 39595167 ~ 39600315 (+)
acox3 acox3 coding downstream 311015 39673972 ~ 39706202 (+)
LOC110500384 LOC106608960 coding downstream 465365 39828322 ~ 39856505 (+)
G1736133 NA non-coding upstream 38270 39296062 ~ 39302368 (+)
G1736093 NA non-coding upstream 148784 39191442 ~ 39191854 (+)
G1735986 NA non-coding upstream 162460 39034509 ~ 39178178 (+)
G1736209 NA non-coding downstream 87903 39450860 ~ 39451178 (+)
G1736377 NA non-coding downstream 341651 39704608 ~ 39705136 (+)
G1736434 NA non-coding downstream 413474 39776431 ~ 39842962 (+)
G1736473 NA non-coding downstream 495662 39858619 ~ 39858919 (+)
G1737283 NA non-coding downstream 597117 39960074 ~ 39960286 (+)
G1736098 NA other upstream 50968 39233664 ~ 39289670 (+)
arrb2b LOC106608931 other upstream 415710 38867935 ~ 38939119 (+)
LOC110500301 LOC106609063 other upstream 1258364 38076983 ~ 38083972 (+)
G1734961 NA other upstream 1294132 38045108 ~ 38046506 (+)
G1736484 LOC106608963 other downstream 512799 39875756 ~ 39876950 (+)
G1737353 NA other downstream 699749 40062706 ~ 40063325 (+)
LOC110500409 LOC106599480 other downstream 1038547 40401452 ~ 40404840 (+)
G1737866 LOC103384823 other downstream 1189054 40552011 ~ 40553853 (+)
G1738057 LOC100194703 other downstream 1630198 40955050 ~ 40997320 (+)

Expression


Co-expression Network