G1750069 (LOC106608688)


Basic Information

Item Value
gene id G1750069
gene name LOC106608688
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 52155273 ~ 52155733 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2003819
AGGTTGCGGGTGACGCGAACATCGTGCCAGGCGTTGTCATTGAACTTCCCATTGACGGGCTCCACCAGCGCCTCGAAGGCGCCCGAGCCCAGGTTGATGACCAACCAGACGGCGCCGCTCTTCAGCGACAGGTTGACGTAGTCGGCCGACTTTCCCGTGTGCAGCATGAGGCCGTTGCGCTGCAGCGTGCGAAAGGAGAGCGTGATCTCGTCCGTGCTGCTCTGGATGGGCGTCAGCGACAGGTCATAGCAGAAGAACTCGTTCCCCTTGAATGTGGCCACCGACACTTCCTTCCCTGGAGAGACATGAAGatgaagaggggggggggttacagttaCAGATGTGTATAGCTCATATAGAGCTGCTGGAACTCATGTTtggtgtatttctgtattggTGACACACACCCAAGATACAATTGGAAGCAAAAGATACGAGAGAGAGATGTATGGAGATAAAAG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2003819 True 461 lncRNA 0.55 1 52155273 52155733

Neighbor

gene id symbol gene type direction distance location
LOC110500695 LOC106608687 coding upstream 600443 51509283 ~ 51554830 (+)
LOC110500694 LOC106608686 coding upstream 648128 51501598 ~ 51507145 (+)
LOC110500691 LOC106608684 coding upstream 669385 51457228 ~ 51485888 (+)
LOC110500885 LOC106608683 coding upstream 742026 51370721 ~ 51413247 (+)
LOC110500687 LOC106608680 coding upstream 793739 51350884 ~ 51361534 (+)
LOC110500700 LOC106608599 coding downstream 806399 52962132 ~ 52963960 (+)
LOC110500701 LOC106608599 coding downstream 813775 52969508 ~ 52971316 (+)
LOC110500702 LOC106608597 coding downstream 833629 52989362 ~ 52996635 (+)
LOC110500711 LOC106608589 coding downstream 949824 53105557 ~ 53139436 (+)
si:dkey-28a3.2 LOC106608587 coding downstream 993086 53148819 ~ 53159292 (+)
G1750055 NA non-coding upstream 30778 52124266 ~ 52124495 (+)
G1750049 NA non-coding upstream 34966 52120097 ~ 52120307 (+)
G1750046 NA non-coding upstream 39321 52115572 ~ 52115952 (+)
G1750043 LOC106608688 non-coding upstream 43049 52111859 ~ 52112224 (+)
G1750032 NA non-coding upstream 55866 52099202 ~ 52099407 (+)
G1750092 NA non-coding downstream 60988 52216721 ~ 52216929 (+)
G1750105 NA non-coding downstream 83982 52239715 ~ 52239990 (+)
G1750108 NA non-coding downstream 104638 52260371 ~ 52260724 (+)
G1750109 NA non-coding downstream 105975 52261708 ~ 52262738 (+)
G1750129 NA non-coding downstream 139381 52295114 ~ 52295325 (+)
G1750030 LOC106608688 other upstream 60168 52094709 ~ 52095105 (+)
G1750012 NA other upstream 76271 52071600 ~ 52079002 (+)
G1749650 NA other upstream 704798 51418969 ~ 51450475 (+)
G1749651 NA other upstream 791893 51362686 ~ 51363380 (+)
gbrap gbrap other upstream 1013265 51134089 ~ 51142008 (+)
G1750050 NA other downstream 35467 52191200 ~ 52197007 (+)
G1751699 LOC106608599 other downstream 806716 52962449 ~ 52972383 (+)
LOC110500722 NA other downstream 1096016 53251413 ~ 53256660 (+)
LOC110500735 ablim2 other downstream 2050965 54206483 ~ 54342581 (+)
G1753100 NA other downstream 2845846 55001579 ~ 55011678 (+)

Expression


Co-expression Network