LOC110501716 (LOC106582159)


Basic Information

Item Value
gene id LOC110501716
gene name LOC106582159
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29912281 ~ 29915808 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579460.2
ttaaggccaaatcattcttcaagatgttcaaatgttcatagatgaccagcagtgtCAAATAATCATCACAGTGGTTGTACAGGGAGCAAcatgtcagcacctcaggagtaaatgtcagttgggttTTCACAGCCCAaaattcagaggtcgagacagcaggtgaggtagaggtagagaaagagcgagagagaggtaggagagagaaataggtagagagagaatgaagtagagagggagagagagagaaagaggtagagagggtgagaaagaggtagagagagagggacaatgtTTAGCTAGGCAATGTTTTTGATGTGTGATGCagctgtgtgtgtaggtgtgtgtttgtgcatgcgtaTGTGTGCATTTAATGATGTCTGAGAGTTTATCTAACTTGAGTTGTGCTTTTCTTCAAATCCATCCTTCACAAAAAGAAAGTCATAGTTGCTATGACAACTGTTCCACCTTGAAACAGGCTTCTCACAGCTAACTGTAGAAATACAAGGAAATCAGCATGATGAGTGCTTTCAATGTCTTATGAAAGCTGTTAAAGGCACTTAGTTTCACTTCTTGATTGATAAACTCTAAAGAAGTTGTAGCTAGAGTACAGAAATACTGTCTTCAGGGacaagtatacacacacacacacacacacattgtactcTCTGATGAGTGATTGCACCgtgtgtatgcgcgtgtgtgtttgCACGTGTGCGTGCATGTGATGAGGGTCATGGCTTTGATCAGTGATTGCATCAAGGgtgagtatgtgtgtgggtggttgggggttatgaAATCAGCGTCTGGACTCTCATTGTTGATtctttctcttgtctctctctccaggtgtgtgtgtaacatCATTGTTGAGACCAGAGAGCCTGCTGATCAGAAGCTACTGATACGAGGGTTACTGCTGAAGGTCACACACCAATGAACACACTTTACAGAGGTACATACAGCTTTTACAGCTATGGAGGATTAAGGTTCATTCATCATCTGTCTGAAGTCCTTATCTTCATGGTTTGAGTgATGGACTTCTCTAACTGTACAGAGGGGTTCTTCTCCCTGGACGATGGGAGTGAAGAGGTTTCTATAATCCCCCCAAGTAAGATCCTCCTCACCTTCACCCTGTCCCTGCTCGCTGTCATGACAACGGCCATCAACTCCCTGGTGATCACAGCCATCATCGTAACCAGGAAGTTGCATCACCCGGCCAACTACCTGATCTGCTCTCTGGCAGTGACAGACCTGCTGGTGGCCATCTTGGTCATGCCCTTCAGCATCCTCTACATACAGAGGGAGAGCTGGCAGATGGGAGAGGCTGTGTGTTACATGTGGCTGAGTGTTGACATCACCTGCTGCACCTGTTCCATCCTCCACCTGGCAGCCATCGCTCTAGACCGCTACCGGGCCATCACTGACGCCGTGGAGTATTCACGCAAACGCACTGGACTCCGAGCTGGGATCACTGTCGGCGTGGTCTGGTTTCTGTCCATCCTCAtatcccttccccctctcctgtgGAGGAACCATGGCGGGGAGCCAGAAGAGGACCAGTGTCTGATAACTCACCACCACATCGCCTTTACCCTCTACTCCACCCTGGGAGCCTTCTATATCCCCTtgctcctcatcctcatcctatACTACAAGATCTACAGAGCAGCTCAGACTCTGTACCTCCGCAGGGGGGCCAGCAGAGGGGCCAGCCGACACTCCTCCATGGTCAACGGAACCACCCTCCCCTCCTGCCCCCCTGATGGGGGCCCCGACACCCTGAACCTCCAGGAGAAGTCCTACTCAGACCCCACCACGGAGGGAGACCGCGTGCGCATTACCGTAAAGAGTCCCCACAGCGAGTCGAGGCGAGAGCGTGAGTGTTCGTTGAGACGGCAGCGTATCTCAGGGACCAGGGAGCGACGCGCTGCATCTACGTTAGGACTGATACTGGGGGCCTTTGTTGTCTGCTGGCTGCCTTTCTTCCTGAAGGAGGTGATCGTCAACACGTGTGGCTCCTGCAGCACCTCCATAGAGCTGGCTGACTTCCTCACCTGGCTGGGGTACCTCAACTCACTCATCAACCCTCTCATCTACACTATATTCAATGAGGACTTTAAGAAGGCCTTCCAGAGACTGGTCAGGTGTAGGCATCGCCTCTGACGCGGACGGAgaggacacacatgcacacacacacaaacacgtgcacGGCGTTCAGTTCTGAGTTGTGTTGGGCCCGGGATGGCATCTGATTGCCTGAGATTAGAGACTATCGACAAGAGACTTTAAATGATTAACTGGAGGAAATTACCTTAGAGACTATGTCAAGACTATGAGACACTCCAGCCAGGTCAGTCTAATGGGACTGACACATTGCTGAGGTCTGGAGGGAAGTTAGGAGGACCTCAGATCTATAAGAGTATATTTATGGAGAGCCCTGCAATCATCATCTTCTTGTTTGTATGGGTTATTGACGTGGCCGGAATGGTGTTGAATGACATTGAAAGGACAATGTTTAAATGACAGACTGAAACAGATGAAGCGCTAGGGTGAAACTCTGGATGTAGACCATCGGCCTCGATCTTTCCAAGGTCTCAGAAAAGCATACCATGGTGTTTCTGTCTGTTCTATAACTATCAACCTCCCCAAGCTAGTCTGCTCTGAAATAAAACGTAT

Function

NR:

description
5-hydroxytryptamine receptor 1F

GO: NA

KEGG:

id description
K04153 HTR1; 5-hydroxytryptamine receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579460.2 True 2676 mRNA 0.49 3 29912281 29915808

Neighbor

gene id symbol gene type direction distance location
LOC118943587 NA coding upstream 8608 29894126 ~ 29903673 (+)
LOC110501715 LOC106582169 coding upstream 40180 29858755 ~ 29872101 (+)
LOC118943646 NA coding upstream 290207 29621005 ~ 29622074 (+)
LOC110501709 LOC106582175 coding upstream 323198 29500150 ~ 29589083 (+)
tsc22d1 LOC107713726 coding upstream 484875 29340787 ~ 29427406 (+)
LOC118943632 LOC100194703 coding downstream 1965 29917773 ~ 29933035 (+)
LOC110501719 LOC106582226 coding downstream 88873 30004681 ~ 30082509 (+)
akap17a LOC106582227 coding downstream 187070 30102878 ~ 30118340 (+)
LOC110502086 NA coding downstream 205050 30120858 ~ 30125521 (+)
LOC110501723 LOC106582229 coding downstream 262911 30178719 ~ 30203292 (+)
G1797733 NA non-coding upstream 969 29910809 ~ 29911312 (+)
G1797693 NA non-coding upstream 60378 29851540 ~ 29851903 (+)
G1797687 NA non-coding upstream 67577 29844077 ~ 29844704 (+)
G1797681 NA non-coding upstream 74905 29837114 ~ 29837376 (+)
G1797680 NA non-coding upstream 75869 29835499 ~ 29836412 (+)
G1797957 NA non-coding downstream 84103 29999911 ~ 30000210 (+)
G1797984 NA non-coding downstream 117203 30033011 ~ 30034968 (+)
G1798036 NA non-coding downstream 206682 30122490 ~ 30122745 (+)
G1798038 NA non-coding downstream 210320 30126128 ~ 30126849 (+)
G1798048 NA non-coding downstream 221864 30137672 ~ 30137948 (+)
G1797582 NA other upstream 167427 29744192 ~ 29744854 (+)
LOC110501700 LOC106582186 other upstream 902008 28997763 ~ 29010281 (+)
LOC110502085 LOC106582160 other upstream 928055 28977890 ~ 28984226 (+)
G1795550 NA other upstream 1820165 28091565 ~ 28092116 (+)
LOC110501693 LOC106582057 other upstream 1874203 28036917 ~ 28052019 (+)
G1798168 NA other downstream 584848 30500656 ~ 30545954 (+)
G1798397 NA other downstream 972853 30888661 ~ 30891067 (+)
G1798579 NA other downstream 1330673 31246481 ~ 31292205 (+)
G1798597 NA other downstream 1377744 31293552 ~ 31297419 (+)

Expression


Co-expression Network