LOC110501719 (LOC106582226)


Basic Information

Item Value
gene id LOC110501719
gene name LOC106582226
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30004681 ~ 30082509 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959071.1
GACCTCACTGCATTCTGCACAGCTGTGCGAgcaagcaaagagagagagagggcgaggagaaatagaagagagagcgagaggggctgCCTGGTTCCCTGCACGGGCTCTGTTGTGGGAAATTGTGCTTTTAAACAGCCTTACGCCGATATGCATTCTTCAGTTTCTGGTGCATTACACGCGCAACAAGAAACCAACACGCACTCGGTTAACGTCATTAATAACGCAGTGTGAGATGGACGAGTCGTCTCTGTTGGATCTATTGGAGTGTTCAGTGTGTTTGGAGCGGCTGGACACTACAGCTAAAGTCCTGCCTTGCCAACACACCTTCTGTCGCCGCTGCTTGGAGAACATAGTCAGCTCCAGGAACGAACTGAGATGCCCAGAATGTCGCATCCTAGTCGGCTGTGAGGTGGATGATCTTCCCGCGAATATCTTGCTGGTCCGTCTGCTGGACGGGATCAAACAGCGGCCACGGAATGGAGGCAGTACCAGGCAGTCCCTGGTGGGGGGCGGGCGGTCTCAGGGCTGTGCAGCCGGGATCAGCGCATCTCCCCCGGGCAGTGGGATCAGGGACATGCCGGTGGCCACACGAAGCCCCCCGGTCAAGAGTTTAcctaatctaaccctaaccctgccctgTGGAAAGGCTCTCTATTCCTACGAGGGGAAGGAACCTGGAGACCTGCAGTTTGCAAAAGGGGACATCATCATCCTGCGACGTAAAGTTGACGACAACTGGTACCATGGGGAGCTGAACAGTTGTCATGGTTTCCTGCCAGCTAGTTACATCGCGTTGTTACGGCCGCTGAGCCAAACTCCGCCCACAGGAAAGGCCTTGTACGACTTTGAAGTCAAAGACAAAGATCAGGACAAAGACTGTCTGGCCTTCtcgaagGATGAGGTTCTGACGGTGATCAGACGAGTGGATGACAACTGGGCAGAGGGCATGCTGGGAGATAAGATCGGGATCTTCCCCATCCTCTATGTAGAGCTAAATGAAACAGCCAAACAGTTGATGGAGATTGACAAGCCGACATCCAATCCCGTCCCTGGCCCCAGCTTTGATCCGTCTCCCGGCCTCCCATTGGGTCCCTGCTCCCTTGGCCCCTCCCCTGACCCATCCTCTGCAGGAAGTGGCAATGGTGCCCTCCagaggcaagaggaggagagaagagggggagaggggaagaaaaaCGCTAAGAAGCGCCACTCGTTCACAGCTCTGAGTGTGACGCAGCGGACAGCCCAGCTCAACAACAGACACAGCATGGAGATCTCCCACCCTGTCCTCATCAGCTCCTCTGACCCCAGGGCTGCTGCACGAATACAGGACTCTCCCCCCGGTCCCCCCGGTCCCACTCCCTCCTCAGTCGGAGTTCTGGTTCCTCCCAGAATGGCTTCAGTCACCTCAGAACTGCTGGCTCAAGCCAAGGTCCAACTACCACTCAACATCTACCTGGCCCTGTATGCGTATAAGTCCCAGAAGGCAGATGAGTTGGAgctgaggaaaggagagatgtACCGTGTCACAGAGAAGTGTCAGGACGGCTGGTTTAAAGGGACCTCTCTACGCACCGCTGCTTCCGGAGTCTTCCCTGGAAACTATGTCACACCCGTGTCACGaGCTCCGTTTGCGGTGGGTGGTTCTCAGAGCTCCTGTCTCTCAGGGcaggaggtgggaggggtgggacAGGGGAGTAAGGCAGCCTCTCCCTCCTCCGCCGGCCCCTCCTCTGCCGGCCCCTCCTCCTCtcgtccctcccctcccccctcttccccccagTCTGCCGCTGCTCAGCTTAAGAACTGCCTTCGCTTTGGACAACAAACAGTTAACCAGACCCGCTCTGCCATGCAACTGGTCCACAGCCCGCCCTCCAGCAGCCCAGAGCGTCCCACACCCACCGTCTCTCCTCTCCGACCTCAGAAATCTTCCCCGTCGCGCTCCGCTGGTCAATCTGCTCGCCCAATATCCATGGTGTCCCCCggcccttcccccctctcctcccctgcttcgcgccctctctcctgcctctcttcgCCCCTCATCCcactttcctcccctctctcctgcctcaccCCTCCCAACGCCAGTGCCGCCCTGCTCAACGGAGAATCAACCAATCCCTTCCAACCGTCCTCGCCTGGCCCCTCCCACAGCAACGCCCCAAAACCAGAGAAGaaggagaagaaaggaggtcTGCTAAAGCTTCTCTCTGGAGCCGCGGCCAAGAAAAAGGCATCTCATTCTCCCCCGTCCTCCCCACCAACCCTCCCCCTGTCGGGTGCCGTCCTCCCACATCACACCCGCTCTGGCTCCTGTCCAATGGATGCCCATGGGCGTGCCGGGTCTTGTCCAATCGAGAGTGAGATGGCGGGGGCAATGGGGTTAGAGCTGCTGAACAGGAAGTCAGGATCCCTCGATCTCAACTTCCCCCGGTCGCCCCCGATGACCCGCCCCGGGAACGCACTGCTAGCTCTCCGGCCTGAACCCAAACCACTGTCCAGAGAGAGGTATCGTGTGGTGGTGCCCTACCCCCCTCAGAGCGAGGCGGAGATCGAGCTGAGACAGGGAGACGTGGTGTTTGTTCATAAGAAGAGAGAAGATGGCTGGTACAAAGGAACTCTGCAGAGGACTGGACGTACTGGCCTCTTCCCTGGCAGCTTCGTAGAGATCTTCTGAACaggaccgctacacacacacacacacacacacacacacacacacacacatacacgcagggATGGGCAAAAATGACAAAATACAATTACAAAAGATCAATGTATCTAAATGAACtacaaaataattgtattttataATCATTTGGGGGGCACCTATATGTGTCCTATTACACACAAGTGTGTAATGGAAATGTTTTTGAGgggcatatcccaactcccctgagacacccttaggggtcacggccagggtcgccATTGTACAGCTCCCCtcgagcaattagggttaagtgactTGCTGAAGGGCACAGCGACTGATTTTTTTCACCTTGTCGCCTCcagtattcaaaccagcaaccttttgatcactggcctaatgctctaacctcgaggctacctgctgccccaaatatatttaattaaaatacatgtattttgtatattaaaatacataaatacatttgcaaactcAGTGACGGATACAGAAACTGTTAATTTGCTATGACTgatgttgtttatctaccttagctGAATGTagtgactgtaagtcactctggataagtgtctgctaaatgactaaaatgctgTATATATGTGAAAATGAACACACCAAAACGAACTGCAAAGCACATTAGGTATTATTATTGGCCTTGTTTCGGGGTCATGTCTAGATGGGATATATCTTAACCTAATTCTCTTAACCTTCTACGTTAATTCTATTGAACCTGCTATGAAAAGTAcattttgacaaaagctgtatccttTCTAGACTTAACCTTGTTTCAgggcggagctcattagaataatacttgTCCATTATTACATACACGTTTAtatttagttcatttagcagacgctcttatgacaccatagtgccatcagtCTTCTGATACCAATGCAGGGTGAAAGGGGGATGGTGAACCGCTATAAACAAATGGTatagaaaagtattttgtattttgaaaatacaaattacAGCTCTCGAAAGTATCTTATTACAAAATACTGTACATTGGAGTGTAGTCCAGCCCAGTGTAATACAATTGACAAAATACTCAGAAGTCATTTAAATAGATATTTAAAATACACGTAACAGAAATACTGCCCATCTCTGCACACACGGCTACTCCAGCTCCAACCAGCCTCATAGGAGCGGGGGCCTTTATCCACACAGGACAGCTATGGCAGGGGTCCTTCATCAACCTCATCAATGACTAGTGATGTTGACATCATCAGGAGGCGCCAGCAACTATTGAAGGCACAACAAGCGGCACACTGTATTTTTCTATTGCTTCAGTGTGTATTTGTTTTAAACATCAGTGTCCGTATGAATGTGTGGTATGGCTAGAGACATGCCGTACTGGTTACAGAAGCACCTAAAGACCTTGGCTAACCTGATACCTGTTCTTTCtggtcggtgtgtgtgtatgcgtgtctgtATTCATGTGTGCGAGTAAGAGAGACCAGTAGTTGGTAATACCAGTCATGTGGAAACTCAACATTGGGAAAGAAAGCACATCAACAGTCCCAAATGTTCTTAATTTTAACATACCCCACTTCTGGCAAGCTACTTCAAACCGCCTCTTTCATTGGCTAAGCACACAACAGTACTCCTCTTTCATTGGTTAAGCACACAACGGTGGTCCTCTCTAATTGGCTAAGTACACAGTTCCTCTCTCATTTACTAAGCACACAACAACTGTACCCCAACAGAAGTAGGTCTATAGgtcaggaagacagagtgaagcACACAGAGTTGGGAAGGCCAGAACGAGTCGGTTACAACACATACAGATGGGATCAGGCTACATCCATACAGCACACTCAGTCTCAgcctaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagaaagagagatatagagaccatCTGTCTCTGATTGGAGTAGCAGATGCAGGGGAGTCTGGGTAATCCCTGAGTTGGGTAACAGACAGATGAGAACACCCAGAGATTCAGATGAGATTAGAACCTTTCCATCAGGCTgcgacacacacaaccacacacacacacacacatacacacacaaccacacacacgacacacacgcacagtcatTGATGTGAAAGGAGTGGATGGGTCCCAGTCTTTCCGctcctcctcagagagagagagtgtatcaGTTAAACATGTTGATGTTGTTGCTGTGGATAAGCTCTTCGGTCTGGGCCAGAAACAACCCTTAGCTCCAGATGAGCCAGCTGTATCCCTGAACCCAAAAGGccagtctgtttgtctgtttctactgtctgtctgtggagCTAATGCACAAGTACTCCATGTTGGAGATAGAGCACTTCCACATGACCCAGACACCACACAGTGTCCATCTTGCTATTCCTGCTCCCCAGTTCCCATGAATTAGTGTGTTCAGGTGGACTGTGTTTCTGGTTTGCCTGGACTGTCTGGTGTGAGTACTGTACCACTGACAAGACTTTACAGACTTTACAAGGGGGTTGTTACGCATGGAATCTCATGCTGTCTAACTATGAGAGACGTTTTACATTACTATAACAGAAAATAagagatataaatatatatattgtgcaGATTATTTATATTTCGGGGGTGCAAGTCGCCCTGCACTCGAGACCAGCGTTCTACCATGTGATCATTAAACATTCTCTCGTATTGATGACCTCGTGGTTTGGTTGGTTTTTCATGTCAAGTGCATTTTCCCAATAAATGCCTTTGTTTTAAACCAA

Function

NR:

description
SH3 domain-containing RING finger protein 3-like

GO: NA

KEGG:

id description
K12171 SH3RF, POSH; E3 ubiquitin-protein ligase SH3RF

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959071.1 True 5546 mRNA 0.50 9 30004681 30082509

Neighbor

gene id symbol gene type direction distance location
LOC118943632 LOC100194703 coding upstream 71646 29917773 ~ 29933035 (+)
LOC110501716 LOC106582159 coding upstream 88873 29912281 ~ 29915808 (+)
LOC118943587 NA coding upstream 101008 29894126 ~ 29903673 (+)
LOC110501715 LOC106582169 coding upstream 132580 29858755 ~ 29872101 (+)
LOC118943646 NA coding upstream 382607 29621005 ~ 29622074 (+)
akap17a LOC106582227 coding downstream 20369 30102878 ~ 30118340 (+)
LOC110502086 NA coding downstream 38349 30120858 ~ 30125521 (+)
LOC110501723 LOC106582229 coding downstream 96210 30178719 ~ 30203292 (+)
arsh LOC106582230 coding downstream 131155 30213664 ~ 30217941 (+)
LOC110501728 LOC106582235 coding downstream 352814 30435323 ~ 30453758 (+)
G1797957 NA non-coding upstream 4471 29999911 ~ 30000210 (+)
G1797733 NA non-coding upstream 93369 29910809 ~ 29911312 (+)
G1797693 NA non-coding upstream 152778 29851540 ~ 29851903 (+)
G1797687 NA non-coding upstream 159977 29844077 ~ 29844704 (+)
G1797681 NA non-coding upstream 167305 29837114 ~ 29837376 (+)
G1798036 NA non-coding downstream 39981 30122490 ~ 30122745 (+)
G1798038 NA non-coding downstream 43619 30126128 ~ 30126849 (+)
G1798048 NA non-coding downstream 55163 30137672 ~ 30137948 (+)
G1798050 NA non-coding downstream 58257 30140766 ~ 30141329 (+)
G1798003 NA non-coding downstream 65372 30147881 ~ 30150071 (+)
G1797582 NA other upstream 259827 29744192 ~ 29744854 (+)
LOC110501700 LOC106582186 other upstream 994408 28997763 ~ 29010281 (+)
LOC110502085 LOC106582160 other upstream 1020455 28977890 ~ 28984226 (+)
G1795550 NA other upstream 1912565 28091565 ~ 28092116 (+)
G1798168 NA other downstream 418147 30500656 ~ 30545954 (+)
G1798397 NA other downstream 806152 30888661 ~ 30891067 (+)
G1798579 NA other downstream 1163972 31246481 ~ 31292205 (+)
G1798597 NA other downstream 1211043 31293552 ~ 31297419 (+)
LOC110501767 LOC106582273 other downstream 2285127 32317123 ~ 32374208 (+)

Expression


Co-expression Network