LOC110501730 (LOC106582240)


Basic Information

Item Value
gene id LOC110501730
gene name LOC106582240
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30506284 ~ 30519043 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579478.2
GTCTGCAGATACAGAAAGTGAAAGACTTCGTGGACTTCGTGCTTTCCCGGAAGCTTAACTGTTAACGTAAGTTAACGGAGTTAAGAGTTTCAGTTTCAATATCACAACCGATCTCTTTTGCCGTGCAAACGCGGACAACAGACTGAACAACAACCTCGCTGTACCGTACAGTGTTGCCGAGTGTTTCTATAGGACAGCATCATGGCAGGCCAGACAGTATCCATGAAGGAACCAGTATGTCTGATAGAGAACGACAATGATGGGAAGCTGCGTGTGGTCCGCAGTGCACTGGGCATCCTGGACCAGATTGACCAGCATGTGGTAGTGGTGTCGGTGGTCGGTCTGTACCGCACTGGCAAGTCCTACCTCATGAACAAGCTGGCTGGGGAGAGGAAAGGTTTTGCCCTGGGAGCCACCATCCAGTCCAAAACTAAGGGCATCTGGATGTGGTGTGTGCCTCACCCTGAAAAAAGAGACCACACCCTGGTGCTGCTGGATACAGAGGGGCTGGGGGACGTGGAGAAGGGTGATGAGAAGAATGACAACTGGATCTTTTCCCTGGCTGTCCTGCTCAGCAGTACTCTGGTGTACAACAGCATGGGAACCATCGACAACAACGCCCTGGAGAAACTACACTATGTGACAGAACTGACAGAGCACATCAAGGTGAAGTCCAACCAGCGAGACGGGGAGGAATCTTCAGAGTACCTGCGTTACTTTCCTTCCTTTGTGTGGACAGTCAGAGATTTCACCCTGACCCTGGAGGTTGATGGGAGACCCATCACAGCCAATGAGTACCTGGAGAACGCTCTTAAACTGAGAACAGGTCATAGTAATAAAGATCAGGCATACAACCTGCCTCGTAGCTGCCTGCGGAACTATTTCTCTCCTCGCTGGTGCTTTGTGTTTGAGAGGCCAGCCAGCGGAGACAAAATGAGACGTATGGAGGAGCTGACCGACGCTGACCTGGAGCCCGCCTTCGTGGAGCAAGCCAAGGAGTTCTGTGACCACGTCTTCAATGAGGCCAAGACCAAGACCCTGAAACAGGGCCTGAAAGTTACCGGCAGACTGCTGGGAAACCTGGCAGAGACGTATGTGTCTGCCATCCGGAGTGGGCAGATCCCCTGCCTGGACAATGCTGTGTTGGCGCTGGCCCAAATTGAGAACTCCGGTGCCATCGAGAGGGCCAGGGGCCACTACCAGAAGGGCATGGCTGACTGGGTGGCCTACCCCACAGAGACCCAAGAGGAGCTGTCTGAAGTGCATGCTGTCATGGAGAAGGAGGCTGTGGCCATATTCATCAACAACTCCTTCAAAGACGAGGACCAGAAGTACCAGTTGGAGCTCATGAAAGTGCTTCAAGAGGAGTATGAGAAGATCTGTGAGAGGAACTACAAGGAGTCCCAGAAGGCATGCGAGTCCAAAATCCAATGCATCTTTGCCCCCCTGGAGGAGAAAATAAGGGATGGCTCCTACATGACCCCTGGAGGATACAAAGAGTACTGCAACGACCTGAAACTGGCCACCAGCGAATACAGAtctgagggaggcagaggggtGAAGGCTGAAGAGGTACTGAAGGAGTACTTGGGAAGGAAGGCCAGCATTGGTGAGGCCATCCTGTCAGCAGACCAGTCCCTCACTGAAGCTGAGCAGAGAGCAGAAGCGGAGCAAGCAAAAAGAGAGGCATCTGAGCGGGAGAATCGAGCCATGGAGGAGCAGCTGGTTGTCCAGGAGAGGTTGAGAGCGGACCAGCAGAGGACGTATGAGGAGAATGTGAACCAgctgatggagaggatggagagagacagcagaaATGCCATAGCAGAGCACGATAGAGTTCTACAGGCCAGACTGAAGgagcagaatgacctTCTCCGGCAAGGGTTTGATGACAGAGCACACCAAATGCAAAGAGAGATAGATGCCCTTAAGGGTGCGAAGGCACAAGAGGAAGAGAAAAACCCCTCATTTATGAGCACAGCTCTGGATACTGTTGGGACTGCAGCTGCCTTGTTCCTTCCAGGAATAATTCCCAAAGTAGGAGGAATGGCTGTGAAATGGCTGTCTAAGTGGTTCTGATGTAGGTTCCCGAGGAGGATGACGAGCTATTATTTTTATAGACGTGGATTGATTGAATCTGTATTTACTGATAGTTGATTCATGGATTTAAGTTAAGCACTCAGTCAAGGTTTTATTTGATGTTAGTTTTTTTTGTACGTCATTTGAATAAGTAATTAGCATGCCTAATCATAAGGAAGTAGAGCTTTTAGAAAGCACTCTTAAAAATGTTTTTCAGTTGTTTTACAATTACCAAATAGGCCTACGTCTTTTTAACACTGACGacatttacatgcacaccaatatccTGTTATTATTCGGGATACTCAAGTATTCTGTTTTTGAGTTGATGCATATAAACGTCATATTCCGTTTACAATAATCTGAAAAAGCTTGTATCCCGGTTATGAGAATCCCGTATAAGATGCCTGGGATATGCTGATCTTAGACGGTAATCTGTGGCGTGTAAACATCCTCTTCCATTTACTGTTTTCCACGGTCTGCACAGGCTCAATAAAACATATCATTGGTGTTGTgtga

Function

NR:

description
guanylate-binding protein 1-like

GO: NA

KEGG:

id description
K20899 GBP1_3_4_7; guanylate-binding protein 1/3/4/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579478.2 True 2601 mRNA 0.49 11 30506284 30519043

Neighbor

gene id symbol gene type direction distance location
LOC110501732 LOC106582240 coding upstream 18670 30470412 ~ 30487614 (+)
LOC110501728 LOC106582235 coding upstream 52526 30435323 ~ 30453758 (+)
arsh LOC106582230 coding upstream 288343 30213664 ~ 30217941 (+)
LOC110501723 LOC106582229 coding upstream 302992 30178719 ~ 30203292 (+)
LOC110502086 NA coding upstream 380763 30120858 ~ 30125521 (+)
LOC110501731 LOC106582241 coding downstream 33318 30552361 ~ 30575546 (+)
trnal-caa-106 NA coding downstream 60453 30579496 ~ 30579604 (+)
trnal-caa-107 NA coding downstream 60963 30580006 ~ 30580114 (+)
LOC110501734 LOC106582244 coding downstream 72826 30591869 ~ 30694906 (+)
LOC110502123 NA coding downstream 188085 30707128 ~ 30708451 (+)
G1798195 NA non-coding upstream 73451 30432608 ~ 30432833 (+)
G1798194 NA non-coding upstream 73769 30428536 ~ 30432515 (+)
G1798191 LOC106581772 non-coding upstream 81973 30424079 ~ 30424311 (+)
G1798149 mab21l3 non-coding upstream 103586 30401673 ~ 30402698 (+)
G1798148 mab21l3 non-coding upstream 105910 30399178 ~ 30400374 (+)
G1798403 sucla2 non-coding downstream 381942 30900985 ~ 30901385 (+)
G1798446 NA non-coding downstream 452568 30971611 ~ 30971848 (+)
G1798447 NA non-coding downstream 456989 30976032 ~ 30976479 (+)
G1798473 NA non-coding downstream 512698 31031741 ~ 31031995 (+)
G1798474 NA non-coding downstream 513836 31032879 ~ 31033235 (+)
LOC118943632 LOC100194703 other upstream 580902 29917773 ~ 29933035 (+)
G1797582 NA other upstream 761430 29744192 ~ 29744854 (+)
LOC110501700 LOC106582186 other upstream 1496011 28997763 ~ 29010281 (+)
LOC110502085 LOC106582160 other upstream 1522058 28977890 ~ 28984226 (+)
G1795550 NA other upstream 2414168 28091565 ~ 28092116 (+)
G1798397 NA other downstream 369618 30888661 ~ 30891067 (+)
G1798579 NA other downstream 727438 31246481 ~ 31292205 (+)
G1798597 NA other downstream 774509 31293552 ~ 31297419 (+)
LOC110501767 LOC106582273 other downstream 1848593 32317123 ~ 32374208 (+)
G1800754 NA other downstream 2391750 32910793 ~ 32914182 (+)

Expression


Co-expression Network