LOC110501731 (LOC106582241)


Basic Information

Item Value
gene id LOC110501731
gene name LOC106582241
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30552361 ~ 30575546 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579479.2
AGTTCCCACTAGCACGTGATCGCGGCATTTAATGAATAACTGCGCAGAGCAGGGACTTTTATAAATCACATATTTCTTTAACTATCCTAACGCTGACCACTGACTGAATAATAACCCACTACAGCTTTGCCGAGGTCAGCATCATGACAGGCCAGAGAGTATCCATGAAGGAACCAGTATGTCTGATAGAGAACGACAGTCATGGGAAGCTGCGTGTGGTCCGCAGTGCACTGGAAATCCTGGACCAGATTGACCAGCATGTGGTAGTGGTGTCGGTGGTCGGGCTGTACCGCACCGGCAAGTCCTACCTCATGAACAAGCTGgctggagagaggaaagGTTTTGCCCTGGGAGCCACCATCCAGTCCAAAACTAAGGGCATTTGGATGTGGTGTGTGCCTCACCCTGAAAAAAGAGACCACACCCTGGTGCTGCTGGATACAGAGGGGCTGGGGGATGTGGAGAAGGGTGATGAGAAGAATGACAACTGGATCTTTTCCCTGGCTGTCCTGCTCAGCAGTACTCTGGTGTACAACAGCATGGGAACCATCGACAACAACGCCCTGGAGAAACTACACTATGTGACAGAACTGACAGAGCACATCAAGGTGAAGTCCAACCAGCGAGACGGGGAGGAATCTTCAGAGTACCTGCGTTACTTTCCTTCCTTTGTGTGGACAGTTAGAGATTTCACCCTGACCCTGGAGGTTGATGGGAGACCCATCACAGCCAATGAGTACTTGGAGAATGCTCTTAAACTGAAAACAGGTCAAAGTGCAAAGGTTCAGCAGTACAACCTGCCTCGTAGCTGCCTGCGGAACTATTTCTCTCCTCGCTGGTGCTTTGTGTTTGAGAGGCCAGCCAGCGGAGACAAAATGAGACATATGGAGGAGCTGACCGACGCCGACCTGGAGCCCGCCTTTGTGGAGCAAGCCAAGGAGTTCTGTGACCACGTCTTCAATGAGGCCAAGACCAAGACCCTGAAACAGGGCCTGAAAGTTACCGGCAGACttCTGGGGAACCTGGCAGAGACATATGTGTCTGCCATCCGGAGCGGGCAGATCCCCTGCCTGGACAATGCTGTGTTGGCGCTGGCCCAAATTGAGAACTCCAGTGCCATCGAGAGGGCCAGGGCCCACTACCAGAAGGGCATGGCTGACTGGGTAGCCTACCCCACAGAGACCCAAGAGGAGCTGTCTGAAGTGCATGCTGTCATGGAGAAGGAGGCTGTGGCCATATTCATCAACAACTCCTTCAAAGACGAGGACCAGAAGTACCAGTTGGAGCTCATGAAAGTGGTTCAAGAGGAGTATGAGAAGATCTGTGAGAGGAACTACAAGGAGTCCCAGAAGTCATGCAAGTCCAAAATCGAATGCATCTTTGCCCCCCTGGAGGAGAAAATAAGGGATGGCTCCTACATGACCCCTGGAGGATACAAAGAGTACTGCAATGACCTGAAACTGGCCACCAGCGAATACAGATCTGAGGGAGGCAGGGGAGTGAAGGGTGAAGAGGTACTGAAGGAGTACTTGGAAAGGAAGGCCAGCATTGGTGAGGCCATCCTGTCAGCAGACCAGTCCCTCACTGAAGCTGAGCAGAGAGCAGAAGccGAGCAAGCAAGAAGGGAGGCATCTGAACGGGAGAATCGAGCCATGGAGGAGCAGCTGGTTGTCCAGGAGAGGTTGAGAGCGGACCAGCAGAGGACGTATGAGGAGAATGTGAACCAgctgatggagaggatggagagagacagcagaaATGCCATAGCAGAGCACGATAGAGTTCTACAGGCCAGACTCAAGGAGCAGAGTGATCTCCTCCAGCAAGGATTTGATGACAAAGCAAGCCAAATGCAAAGAGAGATAGATGCCCTTAAGGATGCGAAGGCACAAGAGGTAGAGAATAGGCCATCATTCATTAGCAAGGCTCTGGATACTGTTGGGACTGCAGCTACAATGTTCCTACCAGGAATATTCCCCAAAATTGGAGGAATGGCTTTGAAATTATTTTCAAAGTTGTTCTGATGAAAGTTCTCAAGGAGAATGATAAACTATCAAATTAGTATTATTCCCATAGACAAGTTTAATCATTTATTGATTCAATCAGTATTTAATGACGGACTTACTTTAGATTAAGCTCTCAATTAAGGTTGTATTTCTTTGGTGTTATGTTAGTTTAGACTACAATACAAAAAAATTAAAGGAAAGCTTTAAATGA

Function

NR:

description
guanylate-binding protein 1-like

GO: NA

KEGG:

id description
K20899 GBP1_3_4_7; guanylate-binding protein 1/3/4/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579479.2 True 2217 mRNA 0.49 11 30552361 30575546

Neighbor

gene id symbol gene type direction distance location
LOC110501730 LOC106582240 coding upstream 33318 30506284 ~ 30519043 (+)
LOC110501732 LOC106582240 coding upstream 64747 30470412 ~ 30487614 (+)
LOC110501728 LOC106582235 coding upstream 98603 30435323 ~ 30453758 (+)
arsh LOC106582230 coding upstream 334420 30213664 ~ 30217941 (+)
LOC110501723 LOC106582229 coding upstream 349069 30178719 ~ 30203292 (+)
trnal-caa-106 NA coding downstream 3950 30579496 ~ 30579604 (+)
trnal-caa-107 NA coding downstream 4460 30580006 ~ 30580114 (+)
LOC110501734 LOC106582244 coding downstream 16323 30591869 ~ 30694906 (+)
LOC110502123 NA coding downstream 131582 30707128 ~ 30708451 (+)
LOC110501739 LOC106582246 coding downstream 338085 30913631 ~ 30943931 (+)
G1798195 NA non-coding upstream 119528 30432608 ~ 30432833 (+)
G1798194 NA non-coding upstream 119846 30428536 ~ 30432515 (+)
G1798191 LOC106581772 non-coding upstream 128050 30424079 ~ 30424311 (+)
G1798149 mab21l3 non-coding upstream 149663 30401673 ~ 30402698 (+)
G1798148 mab21l3 non-coding upstream 151987 30399178 ~ 30400374 (+)
G1798403 sucla2 non-coding downstream 325439 30900985 ~ 30901385 (+)
G1798446 NA non-coding downstream 396065 30971611 ~ 30971848 (+)
G1798447 NA non-coding downstream 400486 30976032 ~ 30976479 (+)
G1798473 NA non-coding downstream 456195 31031741 ~ 31031995 (+)
G1798474 NA non-coding downstream 457333 31032879 ~ 31033235 (+)
G1798168 NA other upstream 6407 30500656 ~ 30545954 (+)
LOC118943632 LOC100194703 other upstream 626979 29917773 ~ 29933035 (+)
G1797582 NA other upstream 807507 29744192 ~ 29744854 (+)
LOC110501700 LOC106582186 other upstream 1542088 28997763 ~ 29010281 (+)
LOC110502085 LOC106582160 other upstream 1568135 28977890 ~ 28984226 (+)
G1798397 NA other downstream 313115 30888661 ~ 30891067 (+)
G1798579 NA other downstream 670935 31246481 ~ 31292205 (+)
G1798597 NA other downstream 718006 31293552 ~ 31297419 (+)
LOC110501767 LOC106582273 other downstream 1792090 32317123 ~ 32374208 (+)
G1800754 NA other downstream 2335247 32910793 ~ 32914182 (+)

Expression


Co-expression Network