trnal-caa-107


Basic Information

Item Value
gene id trnal-caa-107
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30580006 ~ 30580114 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnal-caa-107
gtcaggatggccgagcggtctaaggcgccagactcaagTTCTGGTCTCCGAatggaggcgtgggttcgaatcccacttctgaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnal-caa-107 True 84 mRNA 0.58 2 30580006 30580114

Neighbor

gene id symbol gene type direction distance location
trnal-caa-106 NA coding upstream 402 30579496 ~ 30579604 (+)
LOC110501731 LOC106582241 coding upstream 4460 30552361 ~ 30575546 (+)
LOC110501730 LOC106582240 coding upstream 60963 30506284 ~ 30519043 (+)
LOC110501732 LOC106582240 coding upstream 92392 30470412 ~ 30487614 (+)
LOC110501728 LOC106582235 coding upstream 126248 30435323 ~ 30453758 (+)
LOC110501734 LOC106582244 coding downstream 11755 30591869 ~ 30694906 (+)
LOC110502123 NA coding downstream 127014 30707128 ~ 30708451 (+)
LOC110501739 LOC106582246 coding downstream 333517 30913631 ~ 30943931 (+)
LOC110501741 nek5 coding downstream 368542 30948656 ~ 30960720 (+)
LOC100136146 LOC106582249 coding downstream 396781 30976895 ~ 30995309 (+)
G1798195 NA non-coding upstream 147173 30432608 ~ 30432833 (+)
G1798194 NA non-coding upstream 147491 30428536 ~ 30432515 (+)
G1798191 LOC106581772 non-coding upstream 155695 30424079 ~ 30424311 (+)
G1798149 mab21l3 non-coding upstream 177308 30401673 ~ 30402698 (+)
G1798148 mab21l3 non-coding upstream 179632 30399178 ~ 30400374 (+)
G1798403 sucla2 non-coding downstream 320871 30900985 ~ 30901385 (+)
G1798446 NA non-coding downstream 391497 30971611 ~ 30971848 (+)
G1798447 NA non-coding downstream 395918 30976032 ~ 30976479 (+)
G1798473 NA non-coding downstream 451627 31031741 ~ 31031995 (+)
G1798474 NA non-coding downstream 452765 31032879 ~ 31033235 (+)
G1798168 NA other upstream 34052 30500656 ~ 30545954 (+)
LOC118943632 LOC100194703 other upstream 654624 29917773 ~ 29933035 (+)
G1797582 NA other upstream 835152 29744192 ~ 29744854 (+)
LOC110501700 LOC106582186 other upstream 1569733 28997763 ~ 29010281 (+)
LOC110502085 LOC106582160 other upstream 1595780 28977890 ~ 28984226 (+)
G1798397 NA other downstream 308547 30888661 ~ 30891067 (+)
G1798579 NA other downstream 666367 31246481 ~ 31292205 (+)
G1798597 NA other downstream 713438 31293552 ~ 31297419 (+)
LOC110501767 LOC106582273 other downstream 1787522 32317123 ~ 32374208 (+)
G1800754 NA other downstream 2330679 32910793 ~ 32914182 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) trnal-caa_11 NA coding NC_053123.1 CM020920.1 24866728 ~ 24866838 (-)
striped catfish (Pangasianodon hypophthalmus) trnal-caa_7 NA coding NC_047599.1 CM018545.1 1568745 ~ 1568857 (-)
tiger barb (Puntius tetrazona) trnal-caa_54 NA misc NC_056719.1 CM032088.1 13867958 ~ 13868068 (+)
tiger barb (Puntius tetrazona) trnas-aga_69 NA coding NC_056702.1 CM032071.1 26152705 ~ 26152786 (+)
mexican tetra (Astyanax mexicanus) trnal-caa_7 NA coding NC_035900.1 CM008303.1 14952914 ~ 14953026 (-)
mexican tetra (Astyanax mexicanus) trnal-caa_24 NA coding NW_019171641.1 APWO02001239.1 103637 ~ 103746 (-)