LOC118943606


Basic Information

Item Value
gene id LOC118943606
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 36339754 ~ 36345450 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038827.1
gttttCTATCAATGATTTTCTTCCTGTATAGTGTGGTGTAGTCTACAAAGCACAATTGCCATCATTCCTGATCACTTCATCCTGACCCAACGATTCAACATTAAACAGGAGCTTCTGGCTCTATAAAACCTCTACCACTCTTGGGCCCTATCGAACCAGTGACATGCACACAGCCTGTATGCCTGGATCTTAATCATCATTTACCTTTGCCTTTCCTCTACATCCCTGCGGCTGGAGTGCACCTGCTCCTCCATCTCGGGAATGAGCACCAGTTAGTGATGAGGTGAGGGTACTCTACTATAGCCTCCAGTGCATGCATAAATCGGCTGTATAATTGTTGCCCTACCAACAATGGAATCCTAATATAATGtaataaaaacatatataatataatacatatcgTTAAGTTCGACAATAGATACAATCTCTGCTCGCATCATTCTGTATCCCTCAACAGAAAACCACTTCTGTAACCAGCACGACACATCATCTTGCAAAATTGCTTCATTTTTAGCTCGTGGCACTTCAAACTTTGAAAGAATAAACTCATGAACACACATTGATACATTGTTGCATTGATGAAGCTCAAACTTACATCTATAGTAGGCTACTTTTCAAAGTAACAACGAAACCCCCAGTTAGAATTGCATCACGAGCAGGTTTCCCTTCCGAATCCCGGACCAACAATTTTACTTGCAGCTTTTACTTTTAATGATTTGCTGACGGTTTAACGATCTCGTTTTTAAATCTTCAGTGTACTGTATGTTTTTCTTTTTGTTGTGGGAGCATGAGGGAGATCACTCAAGCAGTACCCCAGTGTACAACCGTGTTATACAACTCTCTTCACTAACAAAATCTCCCAGGGTCGGCCCTAGATTTTGGGGGCCCTaaacacaaaacatttttgtGGCTCCCCCTCTTAACAGCAGAgataaacatttacattttacatttaatttcctgaaattctacacattttgccaagaggcagagattttttttaaatctacaattttacagctaatttcctgcaaatctacccattttgccatggggtggagagacatTTTTGCACGTTTAAAGCTCATTCCATGCaagtctacacattttgccaagaCTTACATCCATGTTAATGATacctgagtgagagtgactaacaaaatcaactGACTAATTTACCAAACAAAGAATTGTTAGCTGaaatggctaattgagtgactgtcagtgactgacaataCCAGTGTTTTCCACTTCATATTAACTATGCTacttttcattttcaattagCTACTCTGTCGAGCCCTCTCCCACTATAATGAACAATATGCATCTTCTAGCAATCTATTGATAGGATAGGCGCCTGTCAGTCACAAAgcgagcagagaggaagaggcgaagcgagatgtttcactctcgccaaaatctgtccaaaataagaccaatgtgtttccattggcttattttggacctaagcttgtcTCCTGTCTTCCCACTTTTAGGACGACTCCCATTGAGACATGAACATCTCATCCTTATatacaggttttttttttttttgtttgcagTCAAATTTCTTTACGCGGAAGAGAGCATGATGCTCGTGATTTTGCACATCCCATGTAATGTAACTGGTAACAATGACTAGCACGCGGTGAATTGTTGCGTGAGTGGGTCGCTTGAGGGTGCTGGCAGCATATGGCAGCAGTTCGATTGTGCGTCAAGAATTCAGCCTTGCAAGTTTGTGTGAATGTCTGGTTATTAAATGGatacagagagctgtgaaagcctgtctgcagatgaagaggtcccaatgaagagcagtggttctcagtcctggttCTGGGAACTGGACCTGTTTTTGCCTTAGctctgattcaaatgatcaagtcatcaagcttcaagtgATATCTTGTAACTGGAGATTCCTTCAAAATGATTGCCTACAGTTACCGTGTAGGGCACTGCAAGGTTGGGTGACCAGAGCCATCTGGGACTGCCTCCTGGAGGAATTCAGGCGTTTGAAGGCTACCTGTGTCGTGCataacttcatgaggatggacacgAGTACCAGGAGGGGGATCTGCAGCTCGCCACCGTGTGCCAGAGGAGAGgtatgttttgatgtgagagaggatgccaCCCCCAGTCCCGTCatcacccgctcttaagataaccttaaGGACAACTGGGGACCCAaagctggttaggagacaccactagagacacTTATGTACTTGTGAAGAACTGAGacaatattagggtagcactgtaattcattaaaCATATGCTGTCTTCCCTGCTCCTCAATTCTTCTTTCCCCTTCTGTCTTTTACACTCTCTCACTTTTTctcgtactattgtttgtacagatgaacgtggtaccttcaggcatttggaaattgctcccaaggatgaaccagatttttttttctgaggtcttggctgatttcttttgattttcccatgatgtcaagcaaagaggcactgagtttgaaggctacaatgtgaggatctgtcacaccagccttcgctttggctccccctcctgtccaGCTCAGGCATTCGGCGTCGCCGGCCTTCTAGCTCCTCCCGAACCTGCTGCTGGCAAATGCCCTTCACTCATCAACCCCGGACTTGTctcgtcatcattacacacacctggttccaatccccactctatACATACTCACTCTGTCATTTGTCTTTTGTCGGCATTGTAAATGTTGCTTATTTTCCTTGAGTGGAATCTCTCCTATTTCCTGAGTACTTTATTATTTAGTACTTTGGGTTTCGTCCCGCTTTTAGAATTATAGTGCTTTAATAAACTCAGTAGTTCTAAACCTG
>XR_005038825.1
ttCTATCAATGATTTTCTTCCTGTATAGTGTGGTGTAGTCTACAAAGCACAATTGCCATCATTCCTGATCACTTCATCCTGACCCAACGATTCAACATTAAACAGGAGCTTCTGGCTCTATAAAACCTCTACCACTCTTGGGCCCTATCGAACCAGTGACATGCACACAGCCTGTATGCCTGGATCTTAATCATCATTTACCTTTGCCTTTCCTCTACATCCCTGCGGCTGGAGTGCACCTGCTCCTCCATCTCGGGAATGAGCACCAGTTAGTGATGAGGTGAGGGTACTCTACTATAGCCTCCAGTGCATGCATAAATCGGCTGTATAATTGTTGCCCTACCAACAATGGAATCCTAATATAATGtaataaaaacatatataatataatacatatcgTTAAGTTCGACAATAGATACAATCTCTGCTCGCATCATTCTGTATCCCTCAACAGAAAACCACTTCTGTAACCAGCACGACACATCATCTTGCAAAATTGCTTCATTTTTAGCTCGTGGCACTTCAAACTTTGAAAGAATAAACTCATGAACACACATTGATACATTGTTGCATTGATGAAGCTCAAACTTACATCTATAGTAGGCTACTTTTCAAAGTAACAACGAAACCCCCAGTTAGAATTGCATCACGAGCAGGTTTCCCTTCCGAATCCCGGACCAACAATTTTACTTGCAGCTTTTACTTTTAATGATTTGCTGACGGTTTAACGATCTCGTTTTTAAATCTTCAGTGTACTGTATGTTTTTCTTTTTGTTGTGGGAGCATGAGGGAGATCACTCAAGCAGTACCCCAGTGTACAACCGTGTTATACAACTCTCTTCACTAACAAAATCTCCCAGGGTCGGCCCTAGATTTTGGGGGCCCTaaacacaaaacatttttgtGGCTCCCCCTCTTAACAGCAGAgataaacatttacattttacatttaatttcctgaaattctacacattttgccaagaggcagagattttttttaaatctacaattttacagctaatttcctgcaaatctacccattttgccatggggtggagagacatTTTTGCACGTTTAAAGCTCATTCCATGCaagtctacacattttgccaagaCTTACATCCATGTTAATGATacctgagtgagagtgactaacaaaatcaactGACTAATTTACCAAACAAAGAATTGTTAGCTGaaatggctaattgagtgactgtcagtgactgacaataCCAGTGTTTTCCACTTCATATTAACTATGCTacttttcattttcaattagCTACTCTGTCGAGCCCTCTCCCACTATAATGAACAATATGCATCTTCTAGCAATCTATTGATAGGATAGGCGCCTGTCAGTCACAAAgcgagcagagaggaagaggcgaagcgagatgtttcactctcgccaaaatctgtccaaaataagaccaatgtgtttccattggcttattttggacctaagcttgtcTCCTGTCTTCCCACTTTTAGGACGACTCCCATTGAGACATGAACATCTCATCCTTATatacaggttttttttttttttgtttgcagTCAAATTTCTTTACGCGGAAGAGAGCATGATGCTCGTGATTTTGCACATCCCATGTAATGTAACTGGTAACAATGACTAGCACGCGGTGAATTGTTGCGTGAGTGGGTCGCTTGAGGGTGCTGGCAGCATATGGCAGCAGTTCGATTGTGCGTCAAGAATTCAGCCTTGCAAGTTTGTGTGAATGTCTGGTTATTAAATGGatacagagagctgtgaaagcctgtctgcagatgaagaggtcccaatgaagagcagtggttctcagtcctggttCTGGGAACTGGACCTGTTTTTGCCTTAGctctgattcaaatgatcaagtcatcaagcttcaagtgATATCTTGTAACTGGAGATTCCTTCAAAATGATTGCCTACAGTTACCGTGTAGGGCACTGCAAGGTTGGGTGACCAGAGCCATCTGGGACTGCCTCCTGGAGGAATTCAGGCGTTTGAAGGCTACCTGTGTCGTGCataacttcatgaggatggacacgAGTACCAGGAGGGGGATCTGCAGCTCGCCACCGTGTGCCAGAGGAGAGGTCTGCTGCTCTACAgtatgttttgatgtgagagaggatgccaCCCCCAGTCCCGTCatcacccgctcttaagataaccttaaGGACAACTGGGGACCCAaagctggttaggagacaccactagagacacTTATGTACTTGTGAAGAACTGAGacaatattagggtagcactgtaattcattaaaCATATGCTGTCTTCCCTGCTCCTCAATTCTTCTTTCCCCTTCTGTCTTTTACACTCTCTCACTTTTTctcgtactattgtttgtacagatgaacgtggtaccttcaggcatttggaaattgctcccaaggatgaaccagatttttttttctgaggtcttggctgatttcttttgattttcccatgatgtcaagcaaagaggcactgagtttgaaggctacaatgtgaggatctgtcacaccagccttcgctttggctccccctcctgtccaGCTCAGGCATTCGGCGTCGCCGGCCTTCTAGCTCCTCCCGAACCTGCTGCTGGCAAATGCCCTTCACTCATCAACCCCGGACTTGTctcgtcatcattacacacacctggttccaatccccactctatACATACTCACTCTGTCATTTGTCTTTTGTCGGCATTGTAAATGTTGCTTATTTTCCTTGAGTGGAATCTCTCCTATTTCCTGAGTACTTTATTATTTAGTACTTTGGGTTTCGTCCCGCTTTTAGAATTATAGTGCTTTAATAAACTCAGTAGTTCTAAACCTG
>XR_005038828.1
TTTTTCTTTTTGTTGTGGGAGCATGAGGGAGATCACTCAAGCAGTACCCCAGTGTACAACCGTGTTATACAACTCTCTTCACTAACAAAATCTCCCAGGGTCGGCCCTAGATTTTGGGGGCCCTaaacacaaaacatttttgtGGCTCCCCCTCTTAACAGCAGAgataaacatttacattttacatttaatttcctgaaattctacacattttgccaagaggcagagattttttttaaatctacaattttacagctaatttcctgcaaatctacccattttgccatggggtggagagacatTTTTGCACGTTTAAAGCTCATTCCATGCaagtctacacattttgccaagaCTTACATCCATGTTAATGATacctgagtgagagtgactaacaaaatcaactGACTAATTTACCAAACAAAGAATTGTTAGCTGaaatggctaattgagtgactgtcagtgactgacaataCCAGTGTTTTCCACTTCATATTAACTATGCTacttttcattttcaattagCTACTCTGTCGAGCCCTCTCCCACTATAATGAACAATATGCATCTTCTAGCAATCTATTGATAGGATAGGCGCCTGTCAGTCACAAAgcgagcagagaggaagaggcgaagcgagatgtttcactctcgccaaaatctgtccaaaataagaccaatgtgtttccattggcttattttggacctaagcttgtcTCCTGTCTTCCCACTTTTAGGACGACTCCCATTGAGACATGAACATCTCATCCTTATatacaggttttttttttttttgtttgcagTCAAATTTCTTTACGCGGAAGAGAGCATGATGCTCGTGATTTTGCACATCCCATGTAATGTAACTGGTAACAATGACTAGCACGCGGTGAATTGTTGCGTGAGTGGGTCGCTTGAGGGTGCTGGCAGCATATGGCAGCAGTTCGATTGTGCGTCAAGAATTCAGCCTTGCAAGTTTGTGTGAATGTCTGGTTATTAAATGGatacagagagctgtgaaagcctgtctgcagatgaagaggtcccaatgaagagcagtggttctcagtcctggttCTGGGAACTGGACCTGTTTTTGCCTTAGctctgattcaaatgatcaagtcatcaagcttcaagtgATATCTTGTAACTGGAGATTCCTTCAAAATGATTGCCTACAGTTACCGTGTAGGGCACTGCAAGGTTGGGTGACCAGAGCCATCTGGGACTGCCTCCTGGAGGAATTCAGGCGTTTGAAGGCTACCTGTGTCGTGCataacttcatgaggatggacacgAGTACCAGGAGGGGGATCTGCAGCTCGCCACCGTGTGCCAGAGGAGAGgtatgttttgatgtgagagaggatgccaCCCCCAGTCCCGTCatcacccgctcttaagataaccttaaGGACAACTGGGGACCCAaagctgatgaacgtggtaccttcaggcatttggaaattgctcccaaggatgaaccagatttttttttctgaggtcttggctgatttcttttgattttcccatgatgtcaagcaaagaggcactgagtttgaaggctacaatgtgaggatctgtcacaccagccttcgctttggctccccctcctgtccaGCTCAGGCATTCGGCGTCGCCGGCCTTCTAGCTCCTCCCGAACCTGCTGCTGGCAAATGCCCTTCACTCATCAACCCCGGACTTGTctcgtcatcattacacacacctggttccaatccccactctatACATACTCACTCTGTCATTTGTCTTTTGTCGGCATTGTAAATGTTGCTTATTTTCCTTGAGTGGAATCTCTCCTATTTCCTGAGTACTTTATTATTTAGTACTTTGGGTTTCGTCCCGCTTTTAGAATTATAGTGCTTTAATAAACTCAGTAGTTCTAAACCTG
>XR_005038826.1
TTTTTGTTGTGGGAGCATGAGGGAGATCACTCAAGCAGTACCCCAGTGTACAACCGTGTTATACAACTCTCTTCACTAACAAAATCTCCCAGGGTCGGCCCTAGATTTTGGGGGCCCTaaacacaaaacatttttgtGGCTCCCCCTCTTAACAGCAGAgataaacatttacattttacatttaatttcctgaaattctacacattttgccaagaggcagagattttttttaaatctacaattttacagctaatttcctgcaaatctacccattttgccatggggtggagagacatTTTTGCACGTTTAAAGCTCATTCCATGCaagtctacacattttgccaagaCTTACATCCATGTTAATGATacctgagtgagagtgactaacaaaatcaactGACTAATTTACCAAACAAAGAATTGTTAGCTGaaatggctaattgagtgactgtcagtgactgacaataCCAGTGTTTTCCACTTCATATTAACTATGCTacttttcattttcaattagCTACTCTGTCGAGCCCTCTCCCACTATAATGAACAATATGCATCTTCTAGCAATCTATTGATAGGATAGGCGCCTGTCAGTCACAAAgcgagcagagaggaagaggcgaagcgagatgtttcactctcgccaaaatctgtccaaaataagaccaatgtgtttccattggcttattttggacctaagcttgtcTCCTGTCTTCCCACTTTTAGGACGACTCCCATTGAGACATGAACATCTCATCCTTATatacaggttttttttttttttgtttgcagTCAAATTTCTTTACGCGGAAGAGAGCATGATGCTCGTGATTTTGCACATCCCATGTAATGTAACTGGTAACAATGACTAGCACGCGGTGAATTGTTGCGTGAGTGGGTCGCTTGAGGGTGCTGGCAGCATATGGCAGCAGTTCGATTGTGCGTCAAGAATTCAGCCTTGCAAGTTTGTGTGAATGTCTGGTTATTAAATGGatacagagagctgtgaaagcctgtctgcagatgaagaggtcccaatgaagagcagtggttctcagtcctggttCTGGGAACTGGACCTGTTTTTGCCTTAGctctgattcaaatgatcaagtcatcaagcttcaagtgATATCTTGTAACTGGAGATTCCTTCAAAATGATTGCCTACAGTTACCGTGTAGGGCACTGCAAGGTTGGGTGACCAGAGCCATCTGGGACTGCCTCCTGGAGGAATTCAGGCGTTTGAAGGCTACCTGTGTCGTGCataacttcatgaggatggacacgAGTACCAGGAGGGGGATCTGCAGCTCGCCACCGTGTGCCAGAGGAGAGGTCTGCTGCTCTACAgtatgttttgatgtgagagaggatgccaCCCCCAGTCCCGTCatcacccgctcttaagataaccttaaGGACAACTGGGGACCCAaagctgatgaacgtggtaccttcaggcatttggaaattgctcccaaggatgaaccagatttttttttctgaggtcttggctgatttcttttgattttcccatgatgtcaagcaaagaggcactgagtttgaaggctacaatgtgaggatctgtcacaccagccttcgctttggctccccctcctgtccaGCTCAGGCATTCGGCGTCGCCGGCCTTCTAGCTCCTCCCGAACCTGCTGCTGGCAAATGCCCTTCACTCATCAACCCCGGACTTGTctcgtcatcattacacacacctggttccaatccccactctatACATACTCACTCTGTCATTTGTCTTTTGTCGGCATTGTAAATGTTGCTTATTTTCCTTGAGTGGAATCTCTCCTATTTCCTGAGTACTTTATTATTTAGTACTTTGGGTTTCGTCCCGCTTTTAGAATTATAGTGCTTTAATAAACTCAGTAGTTCTAAACCTG
>TU2065336
ATTCAGTGTGGTCTAATTTGAGTATAATGAAGTCTGTTTCTTGTGtggttttctgtcctcagatacagagagctgtgaaagcctgtctgcagatgaagaggtcccaatgaagagcagtggttctcagtcctggttCTGGGAACTGGACCTGTTTTTGCCTTAGctctgattcaaatgatcaagtcatcaagcttcaagtgATATCTTGTAACTGGAGATTCCTTCAAAATGATTGCCTACAGTTACCGTGTAGGGCACTGCAAGGTTGGGTGACCAGAGCCATCTGGGACTGCCTCCTGGAGGAATTCAGGCGTTTGAAGGCTACCTGTGTCGTGCataacttcatgaggatggacacgAGTACCAGGAGGGGGATCTGCAGCTCGCCACCGTGTGCCAGAGGAGAGGTCTGCTGCTCTACAGTATGTTTCAATGATTAGGGCCAACAACGCAGCATGGGAGGAAATCCATGTGTGGGATATCTTCACCTCCTACTTCTTCAGagggtgctgttccctggcaaAACCATAGACTACAATGCACAaccaaaggctattttaagagcCATCCACATTGCAATAAGAGTATTCTTCCATTTACTTAGCTATGTCAACTGCAGTTTTTAAATTCCCAGTTTCTCTCCTTTTGATTTCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038827.1 False 2844 mRNA 0.43 5 36339754 36345450
XR_005038825.1 False 2856 mRNA 0.43 5 36339757 36345450
XR_005038828.1 False 1912 mRNA 0.44 6 36340519 36345450
XR_005038826.1 False 1921 mRNA 0.44 6 36340525 36345450
TU2065336 True 655 lncRNA 0.46 2 36342013 36342848

Neighbor

gene id symbol gene type direction distance location
LOC110501801 tsn coding upstream 91920 36243155 ~ 36247834 (+)
LOC110502095 LOC106582360 coding upstream 279617 35943510 ~ 36060137 (+)
LOC110501798 NA coding upstream 524842 35783183 ~ 35814912 (+)
LOC110501797 LOC106582303 coding upstream 559210 35769181 ~ 35780544 (+)
LOC110501795 LOC106596205 coding upstream 579235 35740427 ~ 35760519 (+)
LOC110501802 LOC106582356 coding downstream 8220 36353670 ~ 36359762 (+)
LOC110502098 LOC106586421 coding downstream 16652 36362102 ~ 36376836 (+)
LOC110501803 LOC106582352 coding downstream 34056 36379506 ~ 36406219 (+)
LOC110501805 dirc2 coding downstream 89569 36435000 ~ 36520762 (+)
LOC110501807 pdia5 coding downstream 493264 36838714 ~ 36917226 (+)
G1805158 NA non-coding upstream 1534 36313205 ~ 36338220 (+)
G1805152 NA non-coding upstream 31377 36307550 ~ 36308377 (+)
G1805149 NA non-coding upstream 37547 36301850 ~ 36302207 (+)
G1805123 LOC106582309 non-coding upstream 88510 36248134 ~ 36251244 (+)
G1805068 NA non-coding upstream 107677 36229748 ~ 36232077 (+)
G1805198 NA non-coding downstream 30136 36375586 ~ 36375795 (+)
G1805209 hspbap1 non-coding downstream 69850 36415300 ~ 36425655 (+)
G1805231 NA non-coding downstream 105611 36451061 ~ 36451452 (+)
G1805234 NA non-coding downstream 112343 36457793 ~ 36458456 (+)
G1805246 NA non-coding downstream 129209 36474659 ~ 36474979 (+)
G1804873 NA other upstream 464302 35874562 ~ 35875452 (+)
G1800754 NA other upstream 3425572 32910793 ~ 32914182 (+)
LOC110501767 LOC106582273 other upstream 3965573 32317123 ~ 32374208 (+)
G1798597 NA other upstream 5042335 31293552 ~ 31297419 (+)
G1805191 NA other downstream 18146 36363596 ~ 36363930 (+)
LOC110501842 LOC106586352 other downstream 1734416 38079807 ~ 38213191 (+)
G1807306 NA other downstream 1953677 38282124 ~ 38316253 (+)
G1807376 NA other downstream 2060687 38406137 ~ 38411163 (+)

Expression


Co-expression Network