LOC110501842 (LOC106586352)


Basic Information

Item Value
gene id LOC110501842
gene name LOC106586352
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 38079807 ~ 38213191 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959268.1
agagaggtggggaggactAGAGGCGGCGCAGCTGTCAGTTGTGTTCGTCCTTCTCGTCAAAATCTGTTGCAGACTCGACTAAAGTGTTTACCAGCTCAGTGTACTTTGAGAGCTTAACCAATGTACGGACCTATGGGAGATACATCTTGTTCTCCCCATAACAACATATCACAGCGTAAAGTTGACTGCCTTGCACTTTGGTAACTGTTGGATGGTAAGGTAGACTGAGTTGGCTTCTTTGAGCAGGAAGGTTAGGCTACCCTGGAAGACTACACCTAAATACGTGTGTTGTTTTAAGGATTTTTATGCGAAGTTTCTTCTTCCCAATGTTAATCTATCATTGAGTGTGAGGTAGCATCGCTGGAAGCATACAGGACTGCTGCCAATCTGTGAGGTTGGGACTTGTTGCGTGAAAAACACATCCCCCGGGAATAGTGTTTTCGGGTAAACCCCGTTTTTAAAACCAATTTGCATTCAAGTCGGTGCGTGTCCGTGGTGTTTTGATTTCACAACAGGGCAGATTTTCGAGTGTCTGTGGTGGGTGTTCCCCAATCCTCTAATTCTAGTCCTGACAGTATACAAGTCAGGTCGACTTTGTGGAGACTGGAGAGCGAACATGAGACTGGATGTGATGGACCTTAGGCGTGATTAAAGAAATTGAAGTAATTACCTAGGTCTACCCAACTGCCTGACCGGAGCGGCTCTAATGGTCTAACGGAACAGCCCTCGCCAGATGTGCGCTGGAGTCCAGTTCCGTGGTTCATATTTTTGGAAAGGCGCAGCAGACCCCTCCATAGCCTACCCGTGCACTTATATGTAAATAAATGGCACCCATAATACGTCGAATTTAGTGATTTCCTATAGCCTGTAACTGCTGAGAAGATGTCGGAGCAAGAGCGCTATGGGGACGGACTGTGCGACGATGGAGCTCCGGAGATCATCCCGCCGAGAGCGTCCAGGACGGGAAGGCGGAGCGGAGTCATCCTCCCTGGCCAGGACAACGATACCATCGTCCTGGAGGCAGTGAGGGCAGCCCCACGCAGGAGCAGCATCATCAAGGATCCTTCAGTGCACAAGGTGGCCGGCGGGCGCAAGAAGACTGTGTCCTTCAGTAGCATCCCCTCAGAGAAGAAGGTGAGCAGTGCTGCCGACTGCCTGGCCTTCATGCAGGGGGGCTGTGAGCTGAAGAAGGTGCGTCCCAACTCCCGGGTCTACAGTCGTTTCTACACCCTGGACCAGGACCTCAGCTGCCTGCGCTGGGAGCCCTCTAAGAAGGATGGGGAGCGCGCCCGCCTGGACATGGCCACTATCAGGGAGGTGAGGACGGGGAAGAGCACTGAGACCTTCCTGCATAACGGACCTGCTGCAGAACATCTGGCTGAGGAGGCAGCCTTCTCTATCATCCACGGGGATGACTACCAGTCTCTGGACCTGGTGGCTCTCTCCCCTGACGTGGCCAACATCTGGGTAACGGGGCTGCGTTACCTGGTGTCCCACCCCTCTGTCATCGGGCATGGAGGGGGGGCAGGTGGGGGAGGAGGTCTGGGAGAGGGGAGCATCATAGGGGAGGGTAGCCTCGGCAGTAAGATGAGGAGGGATTGGCTGGCCGCAGAGTTTGCCGAGGTGGATGAAGATGGATACGGGGTCGTCTCAGAGGATACGGCCGTGGCAACCATCTGCAAGCTGTATCCTGGGATCAAGGAAGctaaggtGCGCCTGAGGTTCAAGGAGATCCAGAGGAGCAAGGAGAAGCTGACGTCTCACGTGACGCGCAAGGAGTTCCAGGAGGCCTTCTGTGAGCTATGCACTCGCCCAGACGTCTACTTCCTGTTGGTCCAACTCTCCAAGGACCGCGAGTGTCTGGACGCCCAGGACCTCCGTCTCTTCCTGGAGACGGAGCAAGGCCTGTCTCTGGCCACGGCCGAGGGCTGTCTGGAACTGGTCCGACGCTTCGAGCCCTCCGGccctgggaaagagagaggtctaCTGGCTCTGGATGGATTCTCCCGCTACCTGCAGTCCCCAGAGTGCCAGCTGTTTGACGTGGAGCACCAGGCAGTGTGTCAGGATATGAGCCTGCCCCTGTCCCACTACTACATCAGTACCTCCTATCGGTCCTATCTCCTGGATGACCAGGTCCATGGGAGGGCTGATCTAGGGGGCCTGACCAGGGCTCTCCAGGCCGGGTGTCGGTGCCTAGAGCTGGGGGTGACAGACGGCCCAGAGGGGGAGCCGCTCCTGGGGGTGGACTATGGTCCTGatgcccaccaccaccaccaccaccaccatcatcaccaccacgcCCCGGTCACCATCCGCAGTGCCCTGGAGGTGGTCAATAAGTACGCCTTCCTGACCTCGCCCTATCCACTTCTGCTCTACCTGTGCCAGCGCTGTTCTCCCTCCCAGCAGCGTACCTTGGCCCAGCACCTGAGGAAAGTGTTCTCTACACGTCTCTACACCCCTGAGGCCCTGCCGGTCAGCCTGGGGGGGCGAGCCACCACCCTACCCTCCCCAGAGCAGCTGAAGGGCCGAGTGCTGCTGGTGGGGAAGAAGCTACCGCCCGAAGAGGAGGGGTCTGAGGGAGAGGTgtcagaggaggacgaggagataGGGGGAGGCGGGCCCTTGGCTGGTCGGAAAATGACCATACCTGGGGAGGAGGAACTGGGCGCGGTTTTAGTGGTGCCCCCGCCCCCTCAGCCCAGGAGACTCCGCCTCCGACATGAGCTATCAGATCTTGTGGGCGTGGCTAGAACCGGAAGCCGTAGCTTCTACAACCACCGAGAAACAAGGAAACAAGGACAGCAGCACTCCCCGCCCAGCACCCCCTCCACCCCGGGCACGCCCTTTCCCCCTGAGTCGCCCTATTGGACACTGTGCTCCCTGGGGGAGGGAGAAGCGGGACGGCTGGCCAGTGAGAGCCCAGAGGAATTAGTAAGCTTCACCAAGCGCACCCTGAGCCGTGTTCGGCCAAGCTCCGTCCGCCTGGACTCCTCCAACCCCAACCCCCAGGGCTACTGGAAGGGCGGGGTCCAGCTAGTGGCCCTCAACCAGCAGACCCCCGGGGCCATGCTGGACCTCCACAGAGGCCGGTTCACCCAGAACGGGGGCTGTGGCTTCGTGCTGCGGCCAGGGGTCATGAGAGATGAGGTGTCCTACTTCAGTGCTGTGACCCAGGGCTGTGTGCCTGGCGTTCCCCCTCAGACCCTCAGGGTGAAGGTGATCAGCGCTCACAGCCTGCCCAAGCCGCAGGGCGCCGGGGCTAAAGGAGAGGTTATAGATCCCTACGTGGTTCTGGAGCTGCATGGGGTACCGGCGGACTGCGCTGAGCAACGGACCAGGACTGCAGCACAGAACCAGGATGACCCACTGTTTGATGAGACTTTTGAGTTTCAGGTGAATATGCCGGAGTTGGCGCTCCTCCGCTTCGTGGTATTGGACGATGACTACATCGGAGACGACTTCATTGGCCAGTACAGCGTGGCCTTCGAGTGCCTTCAGCCGGGCTACCGCAACGTGCCCCTGCTGGGTCTGGTGGGAGACCCCTTGCCCCACGCCAGCCTATTCATCCATGTGGCCGTGACCAATCGGCGAGGGGGGGGCAAGGCTCAGAGGAGGGGTCTGTCTGTGCGGAGAGGGGTACGGCGGGGGCGAGAGTACGTGACCCTACGGAACACGGGTATTAAAGCTCTGGATGATACGTTCCGTCCCGCTAGCGCCCCTCTCAAGGAGGCCACGGACTTGCGGGAGGATGCACAGAGGGCCAGTATGACTTTCAAGGAGCATTGTGGGCTCCCCCCAGTGGCCAAGTTGAAGCAGTGCATCCAGAGCCTGGCCACGCGGCTTCAGACCCCAGAGGGCCCTCGGGGGGCCAGCATGACCCTGAAGGATGGCTACCCCCACTTGGAGGCACTGGGCAGCATCACTGACACCACGCGCAAACTACTGAGCCACTATGATATGATGATCTCAGCCCAGAAGCAGCTGATTGAGAAGGCAGACGCTGTGCAGGAGAGGATTGCACAGGttcagagagaggGAATGGAGTTTCATGAGGAGCTGCCCAGgctgggagagaaggaggggctgAAGGGGCGCAAGCATAGTAAAGCCCTGGAGAGTTTCACCTGGAACATCACTGTCCTCAAGGGTCAGTGTGATCTCCTGCATGGTGCCAAGGCAGACTCTCTGGATGCTCTGAGACAGTTGGCCCTGGCCTGTGAAGCCTGTGGCTTGACCTCTACCACCTCCTGCGGTCCCTCTGACCTCCTCTACACCCCTCACGGCAGGAGGGGCAGCACCCATGGCAATGGACGAATCTGACACACCCaacctaccagagagagagggagggggagagagggatggagcggaAGAGATGGTGACACCCCCCAAAATCCCAAActacggggagggagggagggggtggggacagagagagagtggaatggtATAGAATAGAGGCCAGAGCCTATCCCTTTATCCAGAATAAAGTAGCAAGACTACTGAAGAATCGTTGCAGTAATTTGACACCCTGACTTTGTGTTCATCAGTCCTGAGGCTTTTTAACAAAACATGAATGTTCTTACGTTATGTAAAAAACACTTATTTAACAATGTgaatttgaacttaatataactTTCTCCGTTTCTTTCTGATGGAAAACACTGACTAAATGAATACATTTTCtctatgttttttttgtttctcCCTAAAAGGGGATTGTGATTGTGAACACAAAACATTGTTTTGCTGTGAGGAAGAGCGGTGGTGACTTTTATGTTAAAGTTACTTTCTCTATGGACCCTGTACGCTGAACCTAATGTTTGGATTTTGCTCAACTCACCATTTCTGAGCACAGTGGTTTGAAGAACCTGTTTAAGTTCTCCTTCCTAACATTTGAAGCCCAGAGAGTCTATGGAGGAGTCAATTACATTTTCCAGGAAttcacaaccacaacaacaagcGCCTGTTATACTCTGTTAGCCGGGGTTGTCTGCCCGCCTGAAGACTctccaggtagcctagtggtcagagcgttgggccagtaactgaaaggttgctgtatcgaatccccgagctgacaaggtaaaaatctgtccttctgcccctgagcaaggcagtagacccccacacctctctgattcagaggggttgggttaaatgcggaagacacatttcagttgaaggcattcagttgtacaactgactaggtatcccccttccccacACGCATCGACCTAATTTATCCCTCGGAGGAACTGATGTAACGCTGTTGATGAGAGCCATTCTCCTAGTGGATACAACGAGGGGCTTTCATTCAGGGACGGAGTGAAGGGTGACCCCCATGTCCAAGAGGACATGCTGAGGGACAATTGATTAATTAATTGGTTGTGTTAAAAAGGCTTGGTTGATTGATAGATGTGTATTTCTCCACTAGAGGACATTATTGGCGTGTCTGTGTTACTATGAGGGATGTATAGGGGCCCCTTTCTCTATGAGTTGACTGAAAGTATGTGCTGGGTTTGTCCCAGCTTAAAAAACTCACTCAGCTAAACACTGATGTACTCTGACAAAGAACTACAAAAATGGCGCCACTAGGTGCTACTACTAACCTCGGTGTGTTTTTATGCTTGCCCACTTCTGATGGAGTGTGGGACATTAAATGGGGTCTCCTGTGGCTCAGAGGTAAACATTCCGTTCTAGCCTGGGGTAGGAGGTGATGTACCGTCCCTACAGTGATGGATATTAGAATGCTGCATAAGAAAGGCTATTAGCTAAATAAAACTCATGCCCTTACCATAGAACAGGTGCTAGTTCTAAAGCCTCGGCCTCTGCGTTAACCCTTTATGTGCATTTATGAACAAAACGGCAGATGAGTCGTTCCACCAAAATAGAGCCTCTTGCATTTTatgtagaaattgtgcaccaatattgaatctGAAAAGTCTGTtgtattaaatgaagtgcccttttaatatagaccacatggagaattcaatatcTTTATAAGGAATAACGTGCCAAAGTGCCAAAATGCAGTATTTTGGCATGTCCCTTCGTGCACCCTCAGTTACTGCTAGGAAGATTTGAACCCACTTAAACCCAACATTTCTCCCAAGTTTTCAACATCATCGTAAAGTCCTAGttgttttgttgctttgacaaagtccaTTCTGAAGATTATTATTGATTTAATGTGATTCATTTACGTccgtccctcattttaaggtcaaccctgttacctgaACTGAACTCGGGTTTTCAaaatggtgaaactattcctttaaaaaaataaacattgaacGTCttatagtcaaatcatagtgtgaAAGCAGGTGAGTTGGTTCTACTCTTGTTTGGCCATTTTCTAGTGTTTTGTGGTGGGAAACTGAGCGGGTCGAGGATTTCGCGTCAACCCTTTTCCCCACAGATAGCCCTGTCTAGAACCCTTTTCCCCACAGATAGCCCTGGCTAGAACCCTTTTACCCACAGATAGCCCTGGCTAGAACCCTTTTACCCACAGATAGCCCTGGCTAGAACCCTTTTCCCCACAGATAGCCCTGGCTAGAACCCTTTTACCCACAGATAGCCCTGTCTAGAACCCTTTTCCCCACAGATAGCCCTGGCTAGAACCCTTTTACCCACAGATAGCCCTGGCTAGAACCCTTTTACCCACAGATAGCCCTGGCTAGAACCCTTTTACCCACAGATAGCCCTGGCTAGAACCCTTTTACCCACAGATAGCCCTGGCTAGAACCCTTTTCCCCACAGATAGCCCTGGCTAGAACCCTTTTACCCACAGATAGCCCTGGCTAGAACCCTTTTACCCACAGATAGCCCTGGCTAGAACCCTTTTACCCACAGATAGCCCTGGCTAGAACCCTTTTACCCACAGATAGCCCTGGCTAGAACCCTTTTACCCACAGATAGCCCTGGCTAGAACCCTTTTACCCACAGATAGCCCTGGCTAGAACCCTTTTCCCCACAGATAGCCCTGGCTAGAACCCTTTTCCCCACAGATAGCCCTGGCTAGAACCCTTTTCCCCACAGATAGCCCTGGCTAGAACCCTTTTCCCCACAGATAGCCCTGGCTAGAACCCTTTTACCCACAGATAGCCCTGGCTAGAACCCTTTTACCCACAGATAGCCCTGGCTAGAACCCTTTTACCCACAGATAGCCCTGGCTAGAACCCTTTTCCCCACAGATAGCCCTGGCTAGAACCCTTTTCCCCACAGATAGCCCTGGCTAGAACCCTTTTCCCCACAGATAGCCCTGGCTAGAACCCTTTTACCCACAGATAGCCCTGGCTAGAAAGGTTTTAACAATTTAAAGCTTGTGTTCACATGCCCCTCACAACCATCTTCCATTCTCCCTGTCACATGCCCCTCACAACCatcttccattccccctgtcacatgCCCCTCACAGCCATCTTCCATTCCTCCTGTCACATGCCCCTCACAACCATCTTCCATTCTCCCTGTCACATGCCCCTCACAGCCatcttccattccccctgtcacatgCCCCTCACAGCCATCTTCCATTCCTCCTGTCACATGCCCCTCACAACCATCTTCCATTCTCCCTGTCACATGCCCCTCACAACCatcttccattccccctgtcacatggGATTCATGACTGATTTACgatgaaatcgtcaaccctgATACTTTATTTGGCACATAATAGGTACTTACTATagtaatgtttttatttaaaatcTCTTGAGATGGAACGACCCAGATACAGAATGCAAAGATTCCTGTCTAGCCTAATCTGCTCGGCTGGTGTGTTGATGTTTTTTGCTGTGTTGAGACGCTACAAATCTTAAATAAAACCTCTGATCGAACAACACTCTGGTCCAACGCCATagttctgtactttactatactaTAGTAACTCTCTGTAAACCTTAAAGACCATTTAGCAAGTTACATTTGGTTAAATTGTTCTAATAAAAATAGAATAACCCCCCCATGTTGTGACTTATgccgcgttcaagacaactgggaactcaggggaaaaaaaacagctccgactaggatttttttttttacggtcATCCCAACTCGAAATTTGAAGTTGGACACACTGGCATCTTTCTAGAGggccgactttccgacctgaagatcactaacgtcatgatttgacctcgtttgACCTTGAGTTCCTGGTTGCCTTGATAGCCCCATTATACCGGCCCTTATAGCGATGTGTGTATGGGCAACGGTTGCATCCAAACGGGCACtgtattccctacgtagtgcattaCAACCtacgtctgtctgtgtctgctttCTCCTCTGACCGAACATTCAAACACATGTTTGTTTTGTCCCATCGTCGTACACTCGTCACAGTATGTTGTCTTTGTAAAAACAAATATAGAAGAGGATTTATTGAAGGGGATGACGAGTGTTTTAAAACTAATAAATATTATATTAAATGGCCCTAGCTTTAATTTTGAAAagctagatttttttttctctctgattACCAATGTCACAGTTGTACCCTGACTAAATAAAACTATATTTTACTGACCA
>TU2067606
AAATCTGTTGCAGACTCGACTAAAGTGTTTACCAGCTCAGTGTACTTTGAGAGCTTAACCAATGTACGGACCTATGGGAGATACATCTTGTTCTCCCCATAACAACATATCACAGCGTAAAGTTGACTGCCTTGCACTTTGGTAACTGTTGGATGGTAAGGTAGACTGAGTTGGCTTCTTTGAGCAGGAAGGTTAGGCTACCCTGGAAGACTACACCTAAATACGTGTGTTGTTTTAAGGATTTTTATGCGAAGTTTCTTCTTCCCAATGTTAATCTATCATTGAGTGTGAGGTAGCATCGCTGGAAGCATACAGGACTGCTGCCAATCTGTGAGGTTGGGACTTGTTGCGTGAAAAACACATCCCCCGGGAATAGTGTTTTCGGGTAAACCCCGTTTTTAAAACCAATTTGCATTCAAGTCGGTGCGTGTCCGTGGTGTTTTGATTTCACAACAGGGCAGATTTTCGAGTGTCTGTGGTGGGTGTTCCCCAATCCTCTAATTCTAGTCCTGACAGTATACAAGTCAGGTCGACTTTGTGGAGACTGGAGAGCGAACATGAGACTGGATGTGATGGACCTTAGGCGTGATTAAAGAAATTGAAGTAATTACCTAGGTCTACCCAACTGCCTGACCGGAGCGGCTCTAATGGTCTAACGGAACAGCCCTCGCCAGATGTGCGCTGGAGTCCAGTTCCGTGGTTCATATTTTTGGAAAGGCGCAGCAGACCCCTCCATAGCCTACCCGTGCACTTATATGTAAATAAATGGCACCCATAATACGTCGAATTTAGTGATTTCCTATAGCCTGTAACTGCTGAGAAGATGTCGGAGCAAGAGCGCTATGGGGACGGACTGTGCGACGATGGAGCTCCGGAGATCATCCCGCCGAGAGCGTCCAGGACGGGAAGGCGGAGCGGAGTCATCCTCCCTGGCCAGGACAACGATACCATCGTCCTGGAGGCAGTGAGGGCAGCCCCACGCAGGAGCAGCATCATCAAGGATCCTTCAGTGCACAAGGTGGCCGGCGGGCGCAAGAAGACTGTGTCCTTCAGTAGCATCCCCTCAGAGAAGAAGGTGAGCAGTGCTGCCGACTGCCTGGCCTTCATGCAGGGGGGCTGTGAGCTGAAGAAGGTGCGTCCCAACTCCCGGGTCTACAGTCGTTTCTACACCCTGGACCAGGACCTCAGCTGCCTGCGCTGGGAGCCCTCTAAGAAGGATGGGGAGCGCGCCCGCCTGGACATGGCCACTATCAGGGAGGTGAGGACGGGGAAGAGCACTGAGACCTTCCTGCATAACGGACCTGCTGCAGAACATCTGGCTGAGGAGGCAGCCTTCTCTATCATCCACGGGGATGACTACCAGTCTCTGGACCTGGTGGCTCTCTCCCCTGACGTGGCCAACATCTGGGTAACGGGGCTGCGTTACCTGGTGTCCCACCCCTCTGTCATCGGGCATGGA

Function

NR:

description
PREDICTED: inactive phospholipase C-like protein 1, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959268.1 False 8559 mRNA 0.52 10 38079807 38213191
TU2067606 True 1459 TUCP 0.53 4 38079866 38186629

Neighbor

gene id symbol gene type direction distance location
mob3 LOC106582314 coding upstream 50772 38012004 ~ 38029035 (+)
LOC110501840 hsp10 coding upstream 64076 38011849 ~ 38015731 (+)
coq10b LOC106582315 coding upstream 75116 37996085 ~ 38004691 (+)
LOC110501832 LOC100380630 coding upstream 176939 37861492 ~ 37902868 (+)
LOC110502126 LOC106582321 coding upstream 252762 37824691 ~ 37827045 (+)
LOC110501844 tbccd1 coding downstream 237634 38450825 ~ 38456288 (+)
LOC110501847 LOC106582368 coding downstream 263053 38476244 ~ 38485443 (+)
LOC110501849 armc8 coding downstream 278374 38491565 ~ 38519507 (+)
LOC110501851 LOC106582376 coding downstream 527795 38740986 ~ 38754494 (+)
plekhm3 plekhm3 coding downstream 545663 38758854 ~ 38843342 (+)
G1807138 sf3b1 non-coding upstream 73674 37975196 ~ 38006133 (+)
G1807134 NA non-coding upstream 108633 37970362 ~ 37971174 (+)
G1807089 NA non-coding upstream 166067 37913009 ~ 37913740 (+)
G1807088 NA non-coding upstream 167357 37908830 ~ 37912450 (+)
G1806883 NA non-coding upstream 229262 37850278 ~ 37850545 (+)
G1807283 NA non-coding downstream 203 38213394 ~ 38213785 (+)
G1807287 NA non-coding downstream 7897 38221088 ~ 38221822 (+)
G1807306 NA non-coding downstream 68933 38282124 ~ 38316253 (+)
G1807316 LOC106582371 non-coding downstream 90925 38304116 ~ 38305781 (+)
G1807420 NA non-coding downstream 326194 38539385 ~ 38539655 (+)
LOC110501805 dirc2 other upstream 1636730 36435000 ~ 36520762 (+)
G1805191 NA other upstream 1715877 36363596 ~ 36363930 (+)
G1804873 NA other upstream 2204355 35874562 ~ 35875452 (+)
LOC110501795 LOC106596205 other upstream 2320381 35740427 ~ 35760519 (+)
G1800754 NA other upstream 5165625 32910793 ~ 32914182 (+)
G1807376 NA other downstream 192946 38406137 ~ 38411163 (+)
G1807566 NA other downstream 649549 38862740 ~ 38863136 (+)
G1808209 NA other downstream 935889 39149080 ~ 39151333 (+)
G1808787 NA other downstream 1480722 39693913 ~ 39694868 (+)

Expression


Co-expression Network