LOC110501844 (tbccd1)


Basic Information

Item Value
gene id LOC110501844
gene name tbccd1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 38450825 ~ 38456288 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579691.2
TGCAATGTGCGCGCGACCGTCGCTCTGATGAGTCGCGCGCAACAGATGAGAACCAGCAGTGGCGCCAAATAGGAAGAACGTCGAACGTTCTGTAGCTAGCTACGTGCTGATCACATTCACAGCATAGTAAACAAACCATAAGCAAAagccaggtagctagctaaatACTGTAAGGTACTAAACTTTAATTTTACTTATGAGGGAGCTTGATCACCAGTTACTTTTCCTGGAACTTCGAGGCAGGACCAGAAATCGCTTGGACTAGTGGAAACTTGCTGAACAAGCCAAGCCATGGACCAGGGTGGTGGTGTGGCGGTGTGGCCTCGCATGGAGCCCTTCCTCTTGGGGGCTCTGCAGGTTGCACCCCCTACCAAACTCAGCCTGCACTACCTGCGCAAGATGGCTGCCTACGTGCGCTCGCGAGAGGGCTGCTTCCCCATGCTAGGCTGGCTCATGTGGAGGCACATTGCCTGTGGCAAGCTGCAGCTCCCTGAGGACCTGGCCTGGCTCTACTTTGAGACCTTTGACCTGCTGGCTGGTCACCCTGCAGAGGAGAGGCTGGAGTGGGCTGAGAACCTGTCCCAGTGCTCCTCCCCCAGAGAGCTGGACCGCCAGAGGAGCAAGTTGTGTGTGGACACGCTGcagttcctcctcttcctctacattCAGCAGCTGAACCGGGTGTCTCTGCGTACGTCTCTGATTGGTGAAGAGTGGCCAAGCCCCCGCTCTCGCTCCCCCTCCTCGGACCGCGAGGCAAAGACCAGCTCTCAAAATAAGAACTGGGATGACCAGGCCCACCTGTCCTTCCTCCAGACCCACCTGTGTGAACTGCTGGAGCTGCTAGTAGAACCAGGCCAGCTGTCAGGGTCCGGCCAAGCCGTGAAGGACAGCCAGGTCTCTCTGGAGGCTCTACAGGGCCTCAGCCTGCTGCTGGAGGGCTCAGTGTCCCGCGGCCGGAACGTCCACCCCATCCACAAGCTGCTCTCCAGAGCCCCACTCCAGACCCAAGCAGGGTACTCCAAACTCGGCCGCTCCTTCTCCCTGCACCCCCTGCTGGCATGGCTCAGACAGGCCCTCGTCCCCAACCCCTTTGGGATGTCAACCTGCCTGAGGTCTGGGAAGAAGCTGGCCTGGGCTCAGCAAGTGGAGGGAGCTATGAAGAGAGCTAAGATCGCTCGGAACACCCACACGGCCCCCCCAGGCAGCAAGATGGTGCTGATGTCACAGGTGTTCAGACAGACCCTGGCCAAGGACTCAGACAAGCTAGCAGGAGCTAACGTCAAAATACACCGCTGCAGTGACGCCTttatctacctcctctctccactcaggtcagTGAGCCTGGACAAGTGTCGTAACAGCACGGTAGTCCTGGGTCCCATCGAGACCAGTATCCACATCCAAAGCTGTGAGAACGTCAAGGTGGTGTGTGTGGCTGGCCGTCTAGCCATAGGGTCCTCCTCTTACTGTACCATCCATGCCCTCACCCCCACCCGGCCTCTACTGCTCCCTGGGAACACTGCACTCACCCTGGGGCCCTTCCACACACATTACCCCTCCCTGGAGGATCACATGGCCAGTGTGGGTCTAGCTGTGGTGCCCAATGCCTGGGACCAACCCTTACTGGTGGGAGTGGAGGGTACCATCCCAGACCCTGGATCCTACAGGCTGCTGCCGCCCGCTGAGTTCTGCCCCCTTGTGGTGCCCTTCAGGATGGAGGGGGATACGTGTGAGGTGCCGGGTGGGCTGCCATCGCTGTACCAGAAGGCccatgaggagagggagaagagtgtACAGGACTGGCAGAAGATGGTGAAGGATGCCCACCTGAACAAGGAGCAGCGACGTCAGTTCCAGGCACTGGTGGAGCAGAAGTTCCATGAATGGCTGTTGGAGTCCGGACACAGGCAGGAGCTTGATAGCCTTATCCCCCCCTGCATCGCATCCCAGGACCCCTCGGACAGCGACAGCCTGGAGGCCAGGACCAATGACACCAGACAGGAAGGGACATCTATACGGGAAGTGGGACAGACACATCTGCCTTGCTGACTTTTTGGGTTCTTGTTGATGGAGATCCCCATACAAAGCTTTTGCCTTTGCCTCACAGTCAGCGGTTTGCCTCAGACACTAGCACCTCTAATCTCTTTGTTTGCCTGCTGTCTGTCCACAGTTCCAGGCAGGATCTGATCTGAGGATCAGTAGACTACAGAAGGAGGGTGGTCTGGTATAGACGACTGGCTCTGTTCTCGTCCCCTTCATCCAGCTGAGACTGTTGCGTCCCGAttctctacccttctccagaAGTGTGTACTTGTACACTCCCTCTCATGTATTTAACAATGGTGCGGATGTGCAGGGTAGAGAATCAGGACAGAGCCAGTGGTCATAGAGCACTTGGGGTACAATACCATGGTACCTATTGTTAGCCACACTGGTTAGATCTGTGTAGTGTGGTGCCTCTGCAGTGGGTACTGTACTATTGAAATAATAGGGAATCAGGTTGTGCTGTTCATCCAGAGATTGACCTTGTCCAGTATGTAGAAGAAATTAATTAATGTATTCATGTGATTGTACAGTATGTATGATATTACGTCTTAATATGCCTTTTCTGGTAGCATAGGAGAGAGGGTGTGATGAATTTAAAGGTCTGCCTCTTCAACAAATTCCAATGAATTTAGTACCTTCCTAGCCTGAGTGCCAATCTACTGTGCTATCATGTCAACTCCTTACTACTGTTTCAAAATGATCAATGGAGATGGCAAGAGCACACACAGatgtgggaccaggctagtaCTTCCCTGGGATGGGTATTTGAAGCCTGTCGTCTTCAGAAAACACGCACCTCTAAGAGGATGGATGACAGGGCACATTAGTGTAATGAGAAGAGAAACATGTCTTTGAGGGAGCAGTTCTATTCCATTATATGGGTCAAGGGACAGTGGACCTAAAGCAAAGATCTGTGTACTGTTAACATTAGCCTAGCATGGGCCAGAGGATGCTGATGTGTTAGGTAACCTAAGTCTATCCCTTCTTTGTTagtcctctcccttttcctcagTGTGTAGAAGGATGGATGATATTGTGGTTATGCCTTACTGCTGTAGCTTAGTTCTCAGTGACTTGCCTTTCAATTCAATTGCACTATGCTTCCCTGCCTACACAATTACAATGGAATTCATTTACAATGGTTTCTAAGAGCACAATTTTGTTAGTTCTCAAGTGTTCTTTAGACATCAATAAACGATTAGTTTTTTTTGCCTTGA

Function

symbol description
tbccd1 Predicted to be involved in maintenance of Golgi location and maintenance of centrosome location. Predicted to act upstream of or within cell morphogenesis. Predicted to be located in cytoplasm; microtubule organizing center; and spindle pole. Predicted to be active in spindle pole centrosome. Orthologous to human TBCCD1 (TBCC domain containing 1).

NR:

description
TBCC domain-containing protein 1

GO: NA

KEGG:

id description
K16810 TBCCD1; TBCC domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579691.2 True 3266 mRNA 0.53 8 38450825 38456288

Neighbor

gene id symbol gene type direction distance location
LOC110501842 LOC106586352 coding upstream 237634 38079807 ~ 38213191 (+)
mob3 LOC106582314 coding upstream 421790 38012004 ~ 38029035 (+)
LOC110501840 hsp10 coding upstream 435094 38011849 ~ 38015731 (+)
coq10b LOC106582315 coding upstream 446134 37996085 ~ 38004691 (+)
LOC110501832 LOC100380630 coding upstream 547957 37861492 ~ 37902868 (+)
LOC110501847 LOC106582368 coding downstream 19956 38476244 ~ 38485443 (+)
LOC110501849 armc8 coding downstream 35277 38491565 ~ 38519507 (+)
LOC110501851 LOC106582376 coding downstream 284698 38740986 ~ 38754494 (+)
plekhm3 plekhm3 coding downstream 302566 38758854 ~ 38843342 (+)
LOC110501853 LOC106582378 coding downstream 412453 38868673 ~ 38875945 (+)
G1807316 LOC106582371 non-coding upstream 145044 38304116 ~ 38305781 (+)
G1807306 NA non-coding upstream 148250 38282124 ~ 38316253 (+)
G1807287 NA non-coding upstream 229003 38221088 ~ 38221822 (+)
G1807283 NA non-coding upstream 237040 38213394 ~ 38213785 (+)
G1807256 NA non-coding upstream 291846 38155916 ~ 38158979 (+)
G1807420 NA non-coding downstream 83097 38539385 ~ 38539655 (+)
G1807454 NA non-coding downstream 139002 38595290 ~ 38597064 (+)
G1807458 NA non-coding downstream 158254 38614542 ~ 38685713 (+)
G1807481 NA non-coding downstream 230048 38686336 ~ 38686626 (+)
G1807483 NA non-coding downstream 231183 38687471 ~ 38687677 (+)
G1807376 NA other upstream 39662 38406137 ~ 38411163 (+)
LOC110501805 dirc2 other upstream 2007748 36435000 ~ 36520762 (+)
G1805191 NA other upstream 2086895 36363596 ~ 36363930 (+)
G1807566 NA other downstream 406452 38862740 ~ 38863136 (+)
G1808209 NA other downstream 692792 39149080 ~ 39151333 (+)
G1808787 NA other downstream 1237625 39693913 ~ 39694868 (+)
G1809107 NA other downstream 1468126 39924414 ~ 39925395 (+)
G1810553 NA other downstream 2733401 41189689 ~ 41192492 (+)

Expression


Co-expression Network