LOC110501847 (LOC106582368)


Basic Information

Item Value
gene id LOC110501847
gene name LOC106582368
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 38476244 ~ 38485443 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579695.2
TACCACATTCACTATAATTTCACAATTTAATATAATGGGCAACCTGTTTTCTgaaacaatgcctgcagtaccgcGGTTAGCCTTCAATTTGAACTCTTCAATGCGAGGGGGCAGTCGTTTTCCGCTGCGTCTGATTAAAGagagaaaaagaggagagttGGAGAAAGACTTCACGTCCCAGAGTCCCCTGTAGTCTGAGCTCCCATCACTGGGAGGCTCCCGCCCTCCTCATCTCTGTCACCATGGCTACCAGAGGGAGTGGCCGGCCCAATTGCATGCTGCCCCAGACAAAGATATGCCAGTTTAAACTGGTGTTGCTGGGAGACATGGCTGTGGGCAAGTCCAGCCTGGTGCTGCGCTTCGTCAAGGGACAGTTTGATGAGTTCCAGGAGACCACCattggagCTGCATTCCTGGCCCAGTCTGTGTGTCTAGACGACACCACTGTGAAGTTTGAGATCTGGGACACGGCGGGACAGGAGCGCTACCACAGTCTGGCTCCCATGTACTACCGCGGGGCACAGGCTGCTATTGTGGTCTTTGACATCACCAAGCCGGAGACGTTTGAGCGAGCCAAAGCCTGGGTGAAGGAGCTACAGAGGCAGGCTAGCCCCAACATTGTCATCGCTTTGGCAGGGAACAAGGCTGACCTGGCTGAGAAGAGACTAGTGGAGTACGAGGAGGCCCAGACCTATTCTGAAGACACTGGGCTTCTCTTCATGGAGACCTCTGCCAAGACGGCCATGAATGTCAACGATCTGTTCCTGGCCATTGCCAAAAAGATGCCAAAAACAGACACCCAGAACCCTACACACGCAGCACGACACAGAGGAGTGAACCTACAGGACCCTGATGCCCACAACACCCGATCctgctgtggaggaggaggaggaggtgggaacTAGGACCGCTCCACTTCCACCCTGCCATCCCTGCTCCCAACCTCTGGGGTCGGGCAAGGGGACACCCCCTTCaaacctccaccctccctcccatccacagagagatagagacataggGAAAGAGTCGGAACAGGACGGTTGTCTTTTGCGAAGCCAGATAGatttctgacagagagagaggtctgataaAGACTGACAGACAGGAAGAAAAAGAGTGAGTGTGAGACTATATTATTTAGCACTAATCGTGGATGTTGTTTTGCCTTCTGTCTGTCTCGATTCATTTCAATCATGGTTCCATTTCATTATGCAATCGCTGCAGTGTCGGTTCTTGAGTGGcagagagggaagaaaggagagCTGGAGCGAGGGAGTCTTAAGGGATgaggggggaaaagagggaatgGGATGCAGGTCACACTCCCCCAAAGTATTCCCTTTACTGCTGTCCTGAATGCCCCCTCATCACTCCCTCTAGCATGAGTCCCAGGCTGCCTGAACAACCTAAACCCTGAAGCCTTGGCCTGGCCTGAGCCATTCCAGACACTTCCCGGTTGCCACAGATAGAATAACCCATGTTAGATGGCACAGTTTACCCACAATCGCATGAGAGGGAGGGAAACACAGTTCATGGCCTCTTCTGATGCCCTTATTTCCTCtggcctcatttatttatttcccctaggctatattattattattattaatactcCTCAGAGCAGCGGTGTTGCGAGACATCATGGTGCCAATGCCAGTCTGGTATCATCCAGGCCCTTCGTCCTCACCTCCACCCACATATGTACACTAGATATACACTGAAGAATCCACAGTACAGAGTGAGTCTGCTCTATGCCATGTCTGAGTCTGGCCCTCGCTGGAGACCACCGCTGTTTCTAACAATCAATCCACTGTCTAATGCAGCTTTTCACAAACTCCTTCCTGGGCCCCTCCTGGGTgcgtgttttgtttttttgccctagcactacacagccagGGGGCCCAGGACCGAGCTCGGAAAACCCTGGTTACTGCACAGTGATATCCAGGGCTGCAGTTTCTCCTGGTCAGGAGAAAATCCTTGCCTCTCCTGAGTGATAATATATAGTAGGATCTCAAAAccctagcctggtctcagatctgtttgtgctgtcattGCCAAGTCCCTATGGTTGACAATGATCGTGGAGCTAGACAGAAAaagcagatctgggaccaggctacaaacCCCTCTAGGGATGAAGTCCTGTAGTTAGGAAACCATTGTATCTTGCCTGTCATGTTGTGAATGCATGGGCCATGATATACATGCTATGTTCTGCTGTTCCTCGTTTGTCCTGTGTCTTACTGCGTAAGAGTTGATGtaaatgaaaacaatgtaatAACGCTTTTAATGACTGACTAACGAGCTGATGCTGTTCAAAGCACTGGTTTGGAGACGGACAGCTTTGAATACAGAGCTACCCACTCTGTTGGACTCCATTAACGCATAACCCCTAGACATTCCATATAGATCTGGATGGATGAGAGAAGACATATTTGCTTCACCTTGTCAACTGATCGACTGGGTGGATTTATGTTTGCCATATTGCTTCTAACTCTCCATTTGTTTCAGATCTACAGGGAGGTAGGTAGGTGATAGGGGGGGGGGGATCGTTTTGGAATTGCGCATGTTTAGCTAAGAAGAATAAGGGTGCTTACAAGGGGTTTGAAAAACAACAAAGTGCCTACTCTGTTTTATTCCCCTGTATGCTTTGAGTTTGCTCTGGTGTGTGTTCAGTAGGTAGCAGTCCAAGTAAAGCACATCCCTGTAACCATTAGCTGCCTGCACGTTGTCTGTCAGTCTGCCCTTTGAACTCGTCAAAAATACACTATGTATTCTCACCTAATTGTATTGAACCTGTTCTGTTTGTTGTTGATTTTACTGACTAGAATACCTATGTCATCCTGGAATGAATCGCTAACTAAAGGACCCTAATCGATGTGATGAGCTCTACTTAATTTAAAAACAAGTTGTTTCATGGGCTCATCGTGATTAACTGATGAATCCATGAGTCACTCATTCATTAACTCCCTGATCACAGGTTATGTGTAATAATAATGATGTTCACACAATGTGTGGGAAAAAACTGAACTCCCATCAGCACCTCTGTAAAGCGTTGTTCAATAAAGATGTGCTATTGCGCCATGTGTGCAGTCAGTGACTGAACCGA
>XM_021579694.2
TACACCTCATGTACATTGGTCCTCATTTAGCTTTCAATTATTTTGTTGTGATTAAACATTTCCATAATAGGCACAATATACCATTCAGATACAGAGGCATCAAATTACAACCCAACCTATATGTATTAGCTACTGCAGTTCTGTTCTGATGCGgttgtaaatacatttttggtaATGAAAAACAGTCTGTTTTGAGACTGCGGGCCTTTGCACCTGACGAACTAAACGTGGAGGAATGCGGTTATCTATCCGTTTAAGAAAATCGAGAATGCGACACTGACTGCGACTGCGCGAATTTGCAGGAAGTGTTAATAGTCGTTTTACCAGCTGATATATTGTCAACAGTCTCAAGACGGGGACCTCTGATCGTTTCAGAGAGCGCCGATATCGTCACTGagagaaaaagaggagagttGGAGAAAGACTTCACGTCCCAGAGTCCCCTGTAGTCTGAGCTCCCATCACTGGGAGGCTCCCGCCCTCCTCATCTCTGTCACCATGGCTACCAGAGGGAGTGGCCGGCCCAATTGCATGCTGCCCCAGACAAAGATATGCCAGTTTAAACTGGTGTTGCTGGGAGACATGGCTGTGGGCAAGTCCAGCCTGGTGCTGCGCTTCGTCAAGGGACAGTTTGATGAGTTCCAGGAGACCACCattggagCTGCATTCCTGGCCCAGTCTGTGTGTCTAGACGACACCACTGTGAAGTTTGAGATCTGGGACACGGCGGGACAGGAGCGCTACCACAGTCTGGCTCCCATGTACTACCGCGGGGCACAGGCTGCTATTGTGGTCTTTGACATCACCAAGCCGGAGACGTTTGAGCGAGCCAAAGCCTGGGTGAAGGAGCTACAGAGGCAGGCTAGCCCCAACATTGTCATCGCTTTGGCAGGGAACAAGGCTGACCTGGCTGAGAAGAGACTAGTGGAGTACGAGGAGGCCCAGACCTATTCTGAAGACACTGGGCTTCTCTTCATGGAGACCTCTGCCAAGACGGCCATGAATGTCAACGATCTGTTCCTGGCCATTGCCAAAAAGATGCCAAAAACAGACACCCAGAACCCTACACACGCAGCACGACACAGAGGAGTGAACCTACAGGACCCTGATGCCCACAACACCCGATCctgctgtggaggaggaggaggaggtgggaacTAGGACCGCTCCACTTCCACCCTGCCATCCCTGCTCCCAACCTCTGGGGTCGGGCAAGGGGACACCCCCTTCaaacctccaccctccctcccatccacagagagatagagacataggGAAAGAGTCGGAACAGGACGGTTGTCTTTTGCGAAGCCAGATAGatttctgacagagagagaggtctgataaAGACTGACAGACAGGAAGAAAAAGAGTGAGTGTGAGACTATATTATTTAGCACTAATCGTGGATGTTGTTTTGCCTTCTGTCTGTCTCGATTCATTTCAATCATGGTTCCATTTCATTATGCAATCGCTGCAGTGTCGGTTCTTGAGTGGcagagagggaagaaaggagagCTGGAGCGAGGGAGTCTTAAGGGATgaggggggaaaagagggaatgGGATGCAGGTCACACTCCCCCAAAGTATTCCCTTTACTGCTGTCCTGAATGCCCCCTCATCACTCCCTCTAGCATGAGTCCCAGGCTGCCTGAACAACCTAAACCCTGAAGCCTTGGCCTGGCCTGAGCCATTCCAGACACTTCCCGGTTGCCACAGATAGAATAACCCATGTTAGATGGCACAGTTTACCCACAATCGCATGAGAGGGAGGGAAACACAGTTCATGGCCTCTTCTGATGCCCTTATTTCCTCtggcctcatttatttatttcccctaggctatattattattattattaatactcCTCAGAGCAGCGGTGTTGCGAGACATCATGGTGCCAATGCCAGTCTGGTATCATCCAGGCCCTTCGTCCTCACCTCCACCCACATATGTACACTAGATATACACTGAAGAATCCACAGTACAGAGTGAGTCTGCTCTATGCCATGTCTGAGTCTGGCCCTCGCTGGAGACCACCGCTGTTTCTAACAATCAATCCACTGTCTAATGCAGCTTTTCACAAACTCCTTCCTGGGCCCCTCCTGGGTgcgtgttttgtttttttgccctagcactacacagccagGGGGCCCAGGACCGAGCTCGGAAAACCCTGGTTACTGCACAGTGATATCCAGGGCTGCAGTTTCTCCTGGTCAGGAGAAAATCCTTGCCTCTCCTGAGTGATAATATATAGTAGGATCTCAAAAccctagcctggtctcagatctgtttgtgctgtcattGCCAAGTCCCTATGGTTGACAATGATCGTGGAGCTAGACAGAAAaagcagatctgggaccaggctacaaacCCCTCTAGGGATGAAGTCCTGTAGTTAGGAAACCATTGTATCTTGCCTGTCATGTTGTGAATGCATGGGCCATGATATACATGCTATGTTCTGCTGTTCCTCGTTTGTCCTGTGTCTTACTGCGTAAGAGTTGATGtaaatgaaaacaatgtaatAACGCTTTTAATGACTGACTAACGAGCTGATGCTGTTCAAAGCACTGGTTTGGAGACGGACAGCTTTGAATACAGAGCTACCCACTCTGTTGGACTCCATTAACGCATAACCCCTAGACATTCCATATAGATCTGGATGGATGAGAGAAGACATATTTGCTTCACCTTGTCAACTGATCGACTGGGTGGATTTATGTTTGCCATATTGCTTCTAACTCTCCATTTGTTTCAGATCTACAGGGAGGTAGGTAGGTGATAGGGGGGGGGGGATCGTTTTGGAATTGCGCATGTTTAGCTAAGAAGAATAAGGGTGCTTACAAGGGGTTTGAAAAACAACAAAGTGCCTACTCTGTTTTATTCCCCTGTATGCTTTGAGTTTGCTCTGGTGTGTGTTCAGTAGGTAGCAGTCCAAGTAAAGCACATCCCTGTAACCATTAGCTGCCTGCACGTTGTCTGTCAGTCTGCCCTTTGAACTCGTCAAAAATACACTATGTATTCTCACCTAATTGTATTGAACCTGTTCTGTTTGTTGTTGATTTTACTGACTAGAATACCTATGTCATCCTGGAATGAATCGCTAACTAAAGGACCCTAATCGATGTGATGAGCTCTACTTAATTTAAAAACAAGTTGTTTCATGGGCTCATCGTGATTAACTGATGAATCCATGAGTCACTCATTCATTAACTCCCTGATCACAGGTTATGTGTAATAATAATGATGTTCACACAATGTGTGGGAAAAAACTGAACTCCCATCAGCACCTCTGTAAAGCGTTGTTCAATAAAGATGTGCTATTGCGCCATGTGTGCAGTCAGTGACTGAACCGA

Function

NR:

description
ras-related protein Rab-5B-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579695.2 False 3112 mRNA 0.48 6 38476244 38485443
XM_021579694.2 True 3368 mRNA 0.48 6 38476420 38485443

Neighbor

gene id symbol gene type direction distance location
LOC110501844 tbccd1 coding upstream 19956 38450825 ~ 38456288 (+)
LOC110501842 LOC106586352 coding upstream 263053 38079807 ~ 38213191 (+)
mob3 LOC106582314 coding upstream 447209 38012004 ~ 38029035 (+)
LOC110501840 hsp10 coding upstream 460513 38011849 ~ 38015731 (+)
coq10b LOC106582315 coding upstream 471553 37996085 ~ 38004691 (+)
LOC110501849 armc8 coding downstream 6122 38491565 ~ 38519507 (+)
LOC110501851 LOC106582376 coding downstream 255543 38740986 ~ 38754494 (+)
plekhm3 plekhm3 coding downstream 273411 38758854 ~ 38843342 (+)
LOC110501853 LOC106582378 coding downstream 383298 38868673 ~ 38875945 (+)
zgc:162780 yh09 coding downstream 966149 39451592 ~ 39455125 (+)
G1807316 LOC106582371 non-coding upstream 170463 38304116 ~ 38305781 (+)
G1807306 NA non-coding upstream 173669 38282124 ~ 38316253 (+)
G1807287 NA non-coding upstream 254422 38221088 ~ 38221822 (+)
G1807283 NA non-coding upstream 262459 38213394 ~ 38213785 (+)
G1807256 NA non-coding upstream 317265 38155916 ~ 38158979 (+)
G1807420 NA non-coding downstream 53942 38539385 ~ 38539655 (+)
G1807454 NA non-coding downstream 109847 38595290 ~ 38597064 (+)
G1807458 NA non-coding downstream 129099 38614542 ~ 38685713 (+)
G1807481 NA non-coding downstream 200893 38686336 ~ 38686626 (+)
G1807483 NA non-coding downstream 202028 38687471 ~ 38687677 (+)
G1807376 NA other upstream 65081 38406137 ~ 38411163 (+)
LOC110501805 dirc2 other upstream 2033167 36435000 ~ 36520762 (+)
G1805191 NA other upstream 2112314 36363596 ~ 36363930 (+)
G1807566 NA other downstream 377297 38862740 ~ 38863136 (+)
G1808209 NA other downstream 663637 39149080 ~ 39151333 (+)
G1808787 NA other downstream 1208470 39693913 ~ 39694868 (+)
G1809107 NA other downstream 1438971 39924414 ~ 39925395 (+)
G1810553 NA other downstream 2704246 41189689 ~ 41192492 (+)

Expression


Co-expression Network