LOC110501851 (LOC106582376)


Basic Information

Item Value
gene id LOC110501851
gene name LOC106582376
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 38740986 ~ 38754494 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959281.1
GCCCTCCGTGCTGTAGCAACATCGACCTGATCAAAACATTGAACGCGTCTGTCATTCATTGTAGGCATACGTTCTTTGAGGCAGACGAAGCTCCCTATACTTCGTTTAACGAAGACATGCTCGGTGCGCCAGATCGACTACGGTTTGGAGGTTTCAGGATGTCCCAGAAGATCAAGGCAGGGTCGGTGGTGGAGATGCAGGGGGATGAGATGACCAGAGTCATCTGGGAGCTCATTAAGGAGAAGCTCATCTTCCCCTACCTGGAGATGGACCTGCACAGCTACGACCTGGGCATGGAGAACCGTGATGCCACGGACGACAAGGTGACGGTTGAGGCGGCGGAGGCGACGCGGCGCTACAACGTGGGCATTAAGTGTGCCACCATCACGCCGGATGAAAACCGGGTGGAGGAGTTCAAGCTAAAGCAGATGTGGCGCTCGCCCAACGGGACCATCCGTAACATCCTGGGAGGCACCGTGTTCAGGGAGGCCATCATCTGTAAGAACATCCCCCGCCTGGTGCCCGGCTGGGTCAAACCAATCATCATCGGCAGGCATGCCCACGGAGACCAGTACAAGGCCACAGACTTTGTGGTACCTGGACCTGGGAGACTGGAGATGAAATTCACACCCAAGATTGGGGAGCCAATGAACTTTGTCGTCCATGACTTTGAAGGTTCAGGTGGTGTGGCTCTGGGGATGTACAACACAGACAGCTCCATCAGGGACTTTGCCCACAGCTCCTTCCAGATGGGGCTGCAAAAAGCCTGGCCTCTGTACCTCAGCACCAAGAACACCATCCTCAAGAAGTATGACGGGCGCTTCAAAGATATCTTCCAGGAGATCTATGAAAAGCAGTACCGCTCTAAGTTTGAGCAGAAGGGGATCTGGTATGAGCATCGTCTGATTGATGACATGGTGGCTCAGGCCATGAAGTCTGATGGAGGATTCATCTGGGCCTGCAAGAACTACGACGGGGACGTCCAGTCTGACTCTGTAGCCCAAGGTTATGGGTCCCTTGGTATGATGACCAGTGTGCTCATCTGTCCTGACGGTCGTACGGTGGAGTCGGAGGCGGCCCACGGCACGGTAACGCGCCACTACAGACAGCACCAGCAGGGCAAGGAGACATCCACCAACCCCATCGcgtCCATCTTTGCTTGGTCGCGGGGGCTGCTGCACCGGGCAAAGCTGGATGACAACGCAGAGCTGCGTGTGTTTGCTGAGGCCCTGGAGGTCGTCTGCGTGGAGACCATCGAGGCTGGCTTCATGACCAAGGATCTGGCTATCTGTATCAAAGGCATGGCAGATACCAAACGCTCAGACTACCTGAACACCTTTGAGTTCCTGGATAAACTGTCAGAGAACCTGAAGACCAAGATGTCCAACCAACCCAAACTGTGATCACCTCATCTCCCAACTTTAAACGCACACACTATTGACAGCAGGGACTATGGGCCCCGGCCAACACTGAACCAATGAAGGGGACTGTCTGCCCAGAACGCAACCAGAGCTTCTAGAAGACCTAGGACCCTTGAGACTTAATCATTCCCTCCACAAGCAGTCTGTCTGCTTCAAGGAGGTGTCTTgtccagggggagggggggggggggatgtcctCCCAAAGCTAATGAATCATTCCTATCTAAACTACTTGCCATTGCTGTCCCACTCTCCCCATGCTTGCTGTTGCTTGGCAATATGAATATTAATGTGGACTCATTAAACTCAACATGCCTCTTATTTCATTGCTGTTAAGGACTGTTTCAATGTTACCCAACAATACAGACCAACTCCTTCTGCATCATAAAAGCTGTTGACCCCCTACAACTCTAATGCCATCTGCTCTGCCTCTTGACCACGCCCCCAATTCACCTGATGAACTAGCTGCCCAAGTCAACACTGCTCTGTCTCCCCCaattctctcccccaccccctccaaaCTAAACCGTGTCCTTCTCCCCCTGGTTGACCCCTGAGGTCCATGCCCTGCTTGCTTCAATAAGAACTCCTGAACTCTGTTCTCCACTGTCAGCAAACTACTTCAGCCTCGTGACGACAccttctctactccctccacTGAAATCTACAACTCCTTCGTCAGCTATTTTCAAGGAAAAGCTCACAAATACACTTCACACAACTTACTCATCACAGCTCTGTTCTCATTAAAGCCTGCctgctctctgtccatccctgGCTCTTCTCCCTACTGTTCTCATtaaagcctgcctgcctgctctctgtccatccctgGATCCTCTCCCTACTGTTCTCATTAAAGCCTGCCTGCCCTCTGTCCATATATCACACACCATCAACCTCTCCCTTGCCCACGGATCTCACCCCTACAGAACAGCTGCAGACACCCCTCCCCCAATCTTATAAATGCCGGGAACGGACACCACCATCTTTCTGCACAATTTCCAACCTTCCTTTCCAAGACTCTGTTCCAGACTGTTGCCTCCCAATTCAAACCCACCTGCTAGTCAACAACTAATTCAAGCCCCTCCAGTCTGGTTTCCACCACAGTACTGAAACTGCACTCAAAGTTGTGAATGACCTCACCTCTGCTGATGCTGGTGCCCTTAACATCCTGATTCTCCTTGACCAGAGTGCCGCTTTTAGCACTGAGTCATCAGATTGAGGGTACAGCACTTTCCTGGCTACAATCATACCTCATAAACCGGACCCACTACATCTCCCTCAATGGCCATACCTCAGACGCCACTGCAGTCACACAGGGTGTCCCCCAAGGTACTGTGCTGGGCCCCTTACGCTTCATCTTCCTTGATCTGGGTGTCACCTGACCACCTCGGCACCAAATCCCTATTCGACCCACATTGAATTTCCTTTTTCGGCATTAAAAACATGGCTGCAACAACACTTCCTCAAGCTAAGCATTTATAAAACGGAACTCTTACTCATAGACACCAAATCCATCTTCACCAAAGCTGGTAATCTTGCGATTGACACCACTGtctccccacacacactcaacctTGGCTTCACCCTCTCCTTTGACCATCAcataagacagacagactggcaaaTTGTCATTCTTCCACCTCCGCAACATTGCCAAAGCCAGGTCCACCTGTCCTGCCGTTGAAACACGCATTCCATCTCCTCCTGTCTTGACTACTGTAACTCACTACTCTCTAGCGTCAACTCAAGTTCCCTCCATAagcccgaccccccccccccccccccccccccctcacccacaCTAAGTACTGGTAGCACCTCTCCTCTGTGAACTTCATTAGCTCCCTGTCTCTCAACGCTTTGATTACAAGCTCTTCTTTCTGACCTACAAAGCCCTTCACCaccttgcccccccccctccccacctctgACATTCTTGTCCCCTACCAACCCACAtgccccttaccctaaaccaggtTCGTATCCTAACCCTCCCCATACACTGATACATCTCTCTTATTTCAGCCCACCCGCTCTCTTTATTCATGCTTTTGTAAACtttctttttttaatttttatttttacaattgtTTAAAGACTTTGGTCCTTGAAAAGTGCTATATTAATCCCATGTTTTACTATATGTAGGGTTCAGATGTAGGGtgagtttatttgtatttttacagggacagtgcacattaatcaacgtttcagtaaaagtgctggttttagccagccgactaattttcaaccgcagtccctgggcaggttgttgatgtgaggCCCTCTTCTCCATTGATGACTTACCAAAAGATATGGCTAGACCATAGTGGTAACACTCAGCCAATCTAAGTGGCCTGAATCCTAATTTGAGATCACAAGCATaacttgtgattttttttttaagcaatcGCCTAGTGAAATATGTGTTTATAATTCTGCCAAGTATGACTGTTTTTAATGAATGATGGACACAGAAATAACCAGTGTTCCCTACGCTAATTGAActatgtgttgttttttttgtgtgtgtgttgtcggtCAGTGAGCAGTGATCGCCAGTCCTGCCTGAGGGTGATCTTACCCTTCTGTTGCCTTGTCTTATGTAACGTGACTTCAGTCTGTCAcagcattttatatatatatatatattatgccaTGACAACTACTGTAGCCTGTTTAGATTTTGACCGTCTTGGCTTGGTGTCATTGATTCACAAAGCTATACTAGCATCACTCACTCCCTGTTTGTGGTTATGGAAGAGGTCGTAAGATATTAAAAACACACTTAAcaccttacccccccccccccccccccccccatacagaaATGAGTGTCCAAGTACCTTCCTCTGCCAGTAAGCACACACAACCAGGGGATGCAGGTTTGTACTTGACAGTGTGGTCAGAATATCAACTCAATAAATGGGTTTTGGAGAAAA
>XM_036959282.1
CCTCCTGGTTGACGCCTCTATTTGTATGAAACCGCGCCTCTCCTCTAGTCAGTTGTAGCCGCAGCCTTCTAGAACCAGTCCGTGCAGAACAAGCCGCTCTACAGCCTAAACTATTACCCACATATTGTGGTTCTGTTAGAAACTAAGGTTTCAGGATGTCCCAGAAGATCAAGGCAGGGTCGGTGGTGGAGATGCAGGGGGATGAGATGACCAGAGTCATCTGGGAGCTCATTAAGGAGAAGCTCATCTTCCCCTACCTGGAGATGGACCTGCACAGCTACGACCTGGGCATGGAGAACCGTGATGCCACGGACGACAAGGTGACGGTTGAGGCGGCGGAGGCGACGCGGCGCTACAACGTGGGCATTAAGTGTGCCACCATCACGCCGGATGAAAACCGGGTGGAGGAGTTCAAGCTAAAGCAGATGTGGCGCTCGCCCAACGGGACCATCCGTAACATCCTGGGAGGCACCGTGTTCAGGGAGGCCATCATCTGTAAGAACATCCCCCGCCTGGTGCCCGGCTGGGTCAAACCAATCATCATCGGCAGGCATGCCCACGGAGACCAGTACAAGGCCACAGACTTTGTGGTACCTGGACCTGGGAGACTGGAGATGAAATTCACACCCAAGATTGGGGAGCCAATGAACTTTGTCGTCCATGACTTTGAAGGTTCAGGTGGTGTGGCTCTGGGGATGTACAACACAGACAGCTCCATCAGGGACTTTGCCCACAGCTCCTTCCAGATGGGGCTGCAAAAAGCCTGGCCTCTGTACCTCAGCACCAAGAACACCATCCTCAAGAAGTATGACGGGCGCTTCAAAGATATCTTCCAGGAGATCTATGAAAAGCAGTACCGCTCTAAGTTTGAGCAGAAGGGGATCTGGTATGAGCATCGTCTGATTGATGACATGGTGGCTCAGGCCATGAAGTCTGATGGAGGATTCATCTGGGCCTGCAAGAACTACGACGGGGACGTCCAGTCTGACTCTGTAGCCCAAGGTTATGGGTCCCTTGGTATGATGACCAGTGTGCTCATCTGTCCTGACGGTCGTACGGTGGAGTCGGAGGCGGCCCACGGCACGGTAACGCGCCACTACAGACAGCACCAGCAGGGCAAGGAGACATCCACCAACCCCATCGcgtCCATCTTTGCTTGGTCGCGGGGGCTGCTGCACCGGGCAAAGCTGGATGACAACGCAGAGCTGCGTGTGTTTGCTGAGGCCCTGGAGGTCGTCTGCGTGGAGACCATCGAGGCTGGCTTCATGACCAAGGATCTGGCTATCTGTATCAAAGGCATGGCAGATACCAAACGCTCAGACTACCTGAACACCTTTGAGTTCCTGGATAAACTGTCAGAGAACCTGAAGACCAAGATGTCCAACCAACCCAAACTGTGATCACCTCATCTCCCAACTTTAAACGCACACACTATTGACAGCAGGGACTATGGGCCCCGGCCAACACTGAACCAATGAAGGGGACTGTCTGCCCAGAACGCAACCAGAGCTTCTAGAAGACCTAGGACCCTTGAGACTTAATCATTCCCTCCACAAGCAGTCTGTCTGCTTCAAGGAGGTGTCTTgtccagggggagggggggggggggatgtcctCCCAAAGCTAATGAATCATTCCTATCTAAACTACTTGCCATTGCTGTCCCACTCTCCCCATGCTTGCTGTTGCTTGGCAATATGAATATTAATGTGGACTCATTAAACTCAACATGCCTCTTATTTCATTGCTGTTAAGGACTGTTTCAATGTTACCCAACAATACAGACCAACTCCTTCTGCATCATAAAAGCTGTTGACCCCCTACAACTCTAATGCCATCTGCTCTGCCTCTTGACCACGCCCCCAATTCACCTGATGAACTAGCTGCCCAAGTCAACACTGCTCTGTCTCCCCCaattctctcccccaccccctccaaaCTAAACCGTGTCCTTCTCCCCCTGGTTGACCCCTGAGGTCCATGCCCTGCTTGCTTCAATAAGAACTCCTGAACTCTGTTCTCCACTGTCAGCAAACTACTTCAGCCTCGTGACGACAccttctctactccctccacTGAAATCTACAACTCCTTCGTCAGCTATTTTCAAGGAAAAGCTCACAAATACACTTCACACAACTTACTCATCACAGCTCTGTTCTCATTAAAGCCTGCctgctctctgtccatccctgGCTCTTCTCCCTACTGTTCTCATtaaagcctgcctgcctgctctctgtccatccctgGATCCTCTCCCTACTGTTCTCATTAAAGCCTGCCTGCCCTCTGTCCATATATCACACACCATCAACCTCTCCCTTGCCCACGGATCTCACCCCTACAGAACAGCTGCAGACACCCCTCCCCCAATCTTATAAATGCCGGGAACGGACACCACCATCTTTCTGCACAATTTCCAACCTTCCTTTCCAAGACTCTGTTCCAGACTGTTGCCTCCCAATTCAAACCCACCTGCTAGTCAACAACTAATTCAAGCCCCTCCAGTCTGGTTTCCACCACAGTACTGAAACTGCACTCAAAGTTGTGAATGACCTCACCTCTGCTGATGCTGGTGCCCTTAACATCCTGATTCTCCTTGACCAGAGTGCCGCTTTTAGCACTGAGTCATCAGATTGAGGGTACAGCACTTTCCTGGCTACAATCATACCTCATAAACCGGACCCACTACATCTCCCTCAATGGCCATACCTCAGACGCCACTGCAGTCACACAGGGTGTCCCCCAAGGTACTGTGCTGGGCCCCTTACGCTTCATCTTCCTTGATCTGGGTGTCACCTGACCACCTCGGCACCAAATCCCTATTCGACCCACATTGAATTTCCTTTTTCGGCATTAAAAACATGGCTGCAACAACACTTCCTCAAGCTAAGCATTTATAAAACGGAACTCTTACTCATAGACACCAAATCCATCTTCACCAAAGCTGGTAATCTTGCGATTGACACCACTGtctccccacacacactcaacctTGGCTTCACCCTCTCCTTTGACCATCAcataagacagacagactggcaaaTTGTCATTCTTCCACCTCCGCAACATTGCCAAAGCCAGGTCCACCTGTCCTGCCGTTGAAACACGCATTCCATCTCCTCCTGTCTTGACTACTGTAACTCACTACTCTCTAGCGTCAACTCAAGTTCCCTCCATAagcccgaccccccccccccccccccccccccctcacccacaCTAAGTACTGGTAGCACCTCTCCTCTGTGAACTTCATTAGCTCCCTGTCTCTCAACGCTTTGATTACAAGCTCTTCTTTCTGACCTACAAAGCCCTTCACCaccttgcccccccccctccccacctctgACATTCTTGTCCCCTACCAACCCACAtgccccttaccctaaaccaggtTCGTATCCTAACCCTCCCCATACACTGATACATCTCTCTTATTTCAGCCCACCCGCTCTCTTTATTCATGCTTTTGTAAACtttctttttttaatttttatttttacaattgtTTAAAGACTTTGGTCCTTGAAAAGTGCTATATTAATCCCATGTTTTACTATATGTAGGGTTCAGATGTAGGGtgagtttatttgtatttttacagggacagtgcacattaatcaacgtttcagtaaaagtgctggttttagccagccgactaattttcaaccgcagtccctgggcaggttgttgatgtgaggCCCTCTTCTCCATTGATGACTTACCAAAAGATATGGCTAGACCATAGTGGTAACACTCAGCCAATCTAAGTGGCCTGAATCCTAATTTGAGATCACAAGCATaacttgtgattttttttttaagcaatcGCCTAGTGAAATATGTGTTTATAATTCTGCCAAGTATGACTGTTTTTAATGAATGATGGACACAGAAATAACCAGTGTTCCCTACGCTAATTGAActatgtgttgttttttttgtgtgtgtgttgtcggtCAGTGAGCAGTGATCGCCAGTCCTGCCTGAGGGTGATCTTACCCTTCTGTTGCCTTGTCTTATGTAACGTGACTTCAGTCTGTCAcagcattttatatatatatatatattatgccaTGACAACTACTGTAGCCTGTTTAGATTTTGACCGTCTTGGCTTGGTGTCATTGATTCACAAAGCTATACTAGCATCACTCACTCCCTGTTTGTGGTTATGGAAGAGGTCGTAAGATATTAAAAACACACTTAAcaccttacccccccccccccccccccccccatacagaaATGAGTGTCCAAGTACCTTCCTCTGCCAGTAAGCACACACAACCAGGGGATGCAGGTTTGTACTTGACAGTGTGGTCAGAATATCAACTCAATAAATGGGTTTTGGAGAAAA

Function

NR:

description
isocitrate dehydrogenase [NADP] cytoplasmic-like isoform X1

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0006102 isocitrate metabolic process biological_process
GO:0051287 NAD binding molecular_function
GO:0004450 isocitrate dehydrogenase (NADP+) activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K00031 IDH1, IDH2, icd; isocitrate dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959281.1 False 4369 mRNA 0.50 9 38740986 38754494
XM_036959282.1 True 4366 mRNA 0.50 9 38742130 38754494

Neighbor

gene id symbol gene type direction distance location
LOC110501849 armc8 coding upstream 221479 38491565 ~ 38519507 (+)
LOC110501847 LOC106582368 coding upstream 255543 38476244 ~ 38485443 (+)
LOC110501844 tbccd1 coding upstream 284698 38450825 ~ 38456288 (+)
LOC110501842 LOC106586352 coding upstream 527795 38079807 ~ 38213191 (+)
mob3 LOC106582314 coding upstream 711951 38012004 ~ 38029035 (+)
plekhm3 plekhm3 coding downstream 4360 38758854 ~ 38843342 (+)
LOC110501853 LOC106582378 coding downstream 114247 38868673 ~ 38875945 (+)
zgc:162780 yh09 coding downstream 697098 39451592 ~ 39455125 (+)
LOC110501860 LOC106582389 coding downstream 723760 39478254 ~ 39566624 (+)
si:ch73-116o1.2 LOC106582394 coding downstream 1136149 39890643 ~ 39912862 (+)
G1807510 NA non-coding upstream 5294 38735423 ~ 38735692 (+)
G1807502 NA non-coding upstream 14423 38726005 ~ 38726563 (+)
G1807500 NA non-coding upstream 16964 38723569 ~ 38724022 (+)
G1807495 NA non-coding upstream 29577 38711180 ~ 38711409 (+)
G1807493 NA non-coding upstream 32901 38707805 ~ 38708085 (+)
G1807532 NA non-coding downstream 31033 38785527 ~ 38786672 (+)
G1807560 NA non-coding downstream 98696 38853190 ~ 38853499 (+)
G1807561 NA non-coding downstream 99231 38853725 ~ 38853925 (+)
G1807562 NA non-coding downstream 99725 38854219 ~ 38854468 (+)
G1807376 NA other upstream 329823 38406137 ~ 38411163 (+)
G1807306 NA other upstream 424733 38282124 ~ 38316253 (+)
LOC110501805 dirc2 other upstream 2297909 36435000 ~ 36520762 (+)
G1805191 NA other upstream 2377056 36363596 ~ 36363930 (+)
G1807566 NA other downstream 108246 38862740 ~ 38863136 (+)
G1808209 NA other downstream 394586 39149080 ~ 39151333 (+)
G1808787 NA other downstream 939419 39693913 ~ 39694868 (+)
G1809107 NA other downstream 1169920 39924414 ~ 39925395 (+)
G1810553 NA other downstream 2435195 41189689 ~ 41192492 (+)

Expression


Co-expression Network