Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110501840 |
| gene name | hsp10 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048586.1 |
| NCBI id | CM023240.2 |
| chromosome length | 52474311 |
| location | 38011849 ~ 38015731 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| hsp10 | Enables chaperone binding activity and unfolded protein binding activity. Involved in chaperone-mediated protein complex assembly; protein import into mitochondrial intermembrane space; and protein refolding. Located in mitochondrial matrix. Orthologous to human HSPE1 (heat shock protein family E (Hsp10) member 1). |
| description |
|---|
| 10 kDa heat shock protein, mitochondrial-like |
| id | name | namespace |
|---|---|---|
| GO:0006950 | response to stress | biological_process |
| GO:0006457 | protein folding | biological_process |
| GO:0005759 | mitochondrial matrix | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| id | description |
|---|---|
| K04078 | groES, HSPE1; chaperonin GroES |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036959267.1 | False | 717 | mRNA | 0.44 | 4 | 38011849 | 38015731 |
| XM_021579688.2 | True | 751 | mRNA | 0.45 | 5 | 38012004 | 38015731 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| coq10b | LOC106582315 | coding | upstream | 7158 | 37996085 ~ 38004691 (+) |
| LOC110501832 | LOC100380630 | coding | upstream | 108981 | 37861492 ~ 37902868 (+) |
| LOC110502126 | LOC106582321 | coding | upstream | 184804 | 37824691 ~ 37827045 (+) |
| LOC110501829 | LOC106582324 | coding | upstream | 189098 | 37821888 ~ 37822751 (+) |
| LOC110501830 | LOC106582325 | coding | upstream | 194152 | 37815130 ~ 37817697 (+) |
| LOC110501842 | LOC106586352 | coding | downstream | 64076 | 38079807 ~ 38213191 (+) |
| LOC110501844 | tbccd1 | coding | downstream | 435094 | 38450825 ~ 38456288 (+) |
| LOC110501847 | LOC106582368 | coding | downstream | 460513 | 38476244 ~ 38485443 (+) |
| LOC110501849 | armc8 | coding | downstream | 475834 | 38491565 ~ 38519507 (+) |
| LOC110501851 | LOC106582376 | coding | downstream | 725255 | 38740986 ~ 38754494 (+) |
| G1807138 | sf3b1 | non-coding | upstream | 5716 | 37975196 ~ 38006133 (+) |
| G1807134 | NA | non-coding | upstream | 40675 | 37970362 ~ 37971174 (+) |
| G1807089 | NA | non-coding | upstream | 98109 | 37913009 ~ 37913740 (+) |
| G1807088 | NA | non-coding | upstream | 99399 | 37908830 ~ 37912450 (+) |
| G1806883 | NA | non-coding | upstream | 161304 | 37850278 ~ 37850545 (+) |
| G1807226 | NA | non-coding | downstream | 94479 | 38110210 ~ 38111033 (+) |
| G1807247 | NA | non-coding | downstream | 127020 | 38142751 ~ 38143249 (+) |
| G1807256 | NA | non-coding | downstream | 140185 | 38155916 ~ 38158979 (+) |
| G1807283 | NA | non-coding | downstream | 197663 | 38213394 ~ 38213785 (+) |
| G1807287 | NA | non-coding | downstream | 205357 | 38221088 ~ 38221822 (+) |
| LOC110501805 | dirc2 | other | upstream | 1568772 | 36435000 ~ 36520762 (+) |
| G1805191 | NA | other | upstream | 1647919 | 36363596 ~ 36363930 (+) |
| G1804873 | NA | other | upstream | 2136397 | 35874562 ~ 35875452 (+) |
| LOC110501795 | LOC106596205 | other | upstream | 2252423 | 35740427 ~ 35760519 (+) |
| G1800754 | NA | other | upstream | 5097667 | 32910793 ~ 32914182 (+) |
| G1807306 | NA | other | downstream | 283396 | 38282124 ~ 38316253 (+) |
| G1807376 | NA | other | downstream | 390406 | 38406137 ~ 38411163 (+) |
| G1807566 | NA | other | downstream | 847009 | 38862740 ~ 38863136 (+) |
| G1808209 | NA | other | downstream | 1133349 | 39149080 ~ 39151333 (+) |
