LOC110501817 (LOC106582339)


Basic Information

Item Value
gene id LOC110501817
gene name LOC106582339
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 37399070 ~ 37411510 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579657.2
atgctgaaacaggaggtGATGTTGCAACACAGCTGGGTTAAAATTTGAGAGGTGCACGCGATTCAATTTGGCTTCTTTATGCCTCCAGAGGTtccgcaattgcgtcacaccatCTACACGGCGCCTTTGACCACAtttcggatcaagcataaattggctctaACATTTTAAATGCCAGTTGTCAGATGAGCAGCGAGCACAGCGCGAACGGTAGCAGCTGGCCATCATACCGCAACGCACAGCTCTGATCTGTACAAGGAGGAGGATGCGAGTCTTCGCTGTCATCTGGGCCATTGGGTTCTTCTTGAAGGAAGCGCAAGCCTGGGGCTTCAGAAATGGAATATTTCATAACTCCATATGGCTGGAACAAGCCGCCGGAGTCTACCACAGGGAATCGCGTAAAGGGAGATACCAGCTGACTTATAAGGAAGCCAAGGCCGTGTGCAAATACGAAGGAGGGACACTGGCCACTTACGATCAACTGGAGGCTGCTCGTCAGATAGGTTTACACGTGTGTGCGGCTGGATGGTATGACAAAGGACGTGTGGGATACCCTATCGTCAAAGCCGGTGCCAACTGTGGTTTCGGCAGGGTTGGCATCGTCAACTATGGGTACAGGTTGAACAAGAGTGAGAGATGGGACGTCTACTGCTACAACCCCAACTCAAAGGAGTGTGGAGGTACTCTGACAGATCAGCAAAGGATCATCCAGTCACCCGGTTACCCAGAGGAGTACCAGGATGAGCAGATCTGCTACTGGCACATCCGTGTGCGCTACGGACAGAGGATACGCCTGCACTTCCTGGAATTTGATGTGGAGGAGGACACGGCCTGTCTATCAGACTTTTTAGAGATCTATGACAGTTATGACGACATCTCTGGCTTCGCCGGGAGGTACTGTGGAGATTATTTACCAGATGACCTCATAAGCACAGggaatgtgatgacaCTAAAGTTCCTGTCCGATGCCTCTGTAGTCGCAGGAGGCTTCCAGATGGAGTACATTGCTGTgaactcttctctcctccacttccaGAATGACACCAGCTGTTGCTTCACCTGACCAATGTTTACTTATTTTTTCAGCATGATCagcttttatacaggtaacaaactgagattaggagaactccctttaagagtgtgctcctaatctcagctcgttacctgtataaaaggcacctgggagccagaaatctttccgATTGagaaggggtcaaatacttatttctctcattaaaattcaaattaatttataacatttttgacattcgttttttctggattttttgttgttattctgtctctcactgttcaaataaacctaccattaaaatta

Function

NR:

description
tumor necrosis factor-inducible gene 6 protein-like

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0005540 hyaluronic acid binding molecular_function

KEGG:

id description
K19018 TNFAIP6, TSG6; tumor necrosis factor-inducible gene 6 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579657.2 True 1339 mRNA 0.47 6 37399070 37411510

Neighbor

gene id symbol gene type direction distance location
LOC110501816 LOC106582342 coding downstream 8754 37358144 ~ 37390316 (-)
hacd2 hacd2 coding downstream 281233 37105485 ~ 37117837 (-)
LOC110501809 adcy5 coding downstream 299449 36980096 ~ 37099621 (-)
LOC110501806 sema5b coding downstream 561487 36552698 ~ 36837583 (-)
hspbap1 hspbap1 coding downstream 957708 36405741 ~ 36441362 (-)
LOC110501818 LOC106582337 coding upstream 21423 37432933 ~ 37528626 (-)
LOC110501819 LOC106582336 coding upstream 134216 37545726 ~ 37575934 (-)
LOC110502101 LOC106582334 coding upstream 164905 37576415 ~ 37723467 (-)
LOC110501826 NA coding upstream 351330 37762840 ~ 37765227 (-)
LOC110501827 LOC106582332 coding upstream 358150 37769660 ~ 37770890 (-)
G1806609 NA non-coding downstream 49813 37347512 ~ 37349257 (-)
G1806590 LOC106600293 non-coding downstream 105499 37289118 ~ 37293571 (-)
G1806558 LOC106582344 non-coding downstream 167009 37231320 ~ 37232061 (-)
G1806539 LOC106582346 non-coding downstream 177205 37218976 ~ 37221865 (-)
G1806535 NA non-coding downstream 207014 37191055 ~ 37192056 (-)
G1806686 NA non-coding upstream 64453 37475963 ~ 37482618 (-)
G1806687 NA non-coding upstream 64826 37476336 ~ 37483685 (-)
G1806708 NA non-coding upstream 117855 37529365 ~ 37529684 (-)
G1806717 NA non-coding upstream 127790 37539300 ~ 37539499 (-)
G1806449 NA other downstream 286596 37043561 ~ 37112474 (-)
G1806393 NA other downstream 462983 36935658 ~ 36936087 (-)
G1805927 LOC106582360 other downstream 1339302 36057844 ~ 36059768 (-)
LOC110502094 LOC106582301 other downstream 2179371 35138330 ~ 35471205 (-)
G1807020 LOC105030512 other upstream 348461 37759971 ~ 37760248 (-)
G1807750 LOC106582372 other upstream 781912 38193422 ~ 38195096 (-)
G1807731 NA other upstream 797280 38208790 ~ 38241273 (-)
LOC110502145 LOC106586333 other upstream 1164356 38520872 ~ 38726596 (-)
G1808299 NA other upstream 1532626 38944136 ~ 38944530 (-)

Expression


Co-expression Network