LOC110501899 (LOC106582439)


Basic Information

Item Value
gene id LOC110501899
gene name LOC106582439
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 42801020 ~ 42823612 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579756.2
ACTCCGACCCTATGTAAACCATGATTTAATCAGGTTGGATGTCAGTTTACATTGGGATAGTTTGTGTGAATCATTTATTTGTACTAGAAACTTAAATCATTATCCACTTTAAGGCGCCGGTGACTTTTCTTAGGTGTCCATATAGTTGCCTGCGATATTTCAGCCAGTCCGTCTTCTTGAATCGTCAATGCTGTGTCGTGTCCTTATTGTAGCCTACAGTTGAATACAGCGGGAGTTTTCGCATACGTTCGTGTTGCCTACAGGATTGTTTGCTTAGTGAGCGTCGTTAGCTCGTGCACGGAACACATCTTATTCCACAGCCCTCGTAGCTTCATTTTTAACTTCATCCTTGAAATGGAGTGTCGTGTGTTATCTATTCAGAGTCATGTTGTCAGGGGATACGTCGGGAATAAATCGGCAACATTTCCATTGCAGGTGCTTGGGTTCGAAGTGGACTCCATCAACTCAGTGCAATTCTCCAATCACACAGGTTACGCTCACTGGAAAGGGCAAGTGCTGACGGCAGAGGAGCTTAACGTTCTCTATGAGGGTATCAAACTCAACAACGTCAACCATTATGACTACATCCTCACGGGGTACACCAGGGACACCTCTTTCTTAGAGACAGTGGTGGACATTGTTCAAGAGCTGAAGAGGTTGAATCCCAAACTGGTATATGtgtgtgatCCAGTGATGGGAGACCAAGGCTCTATGTATGTCCCTGAGAATATACTGCCTGTTTACAAAGACAAAGTCGTAGCAGTGGCTGATATCCTCACACCCAACCAGTTTGAGGCTGAGCTGCTGACGGGGAGGACGATCAGCACAGAAAAAGACGCTCTTGACGTGATGGAGCTGCTCCATCAGATGGGTCCTGATACGGTGGTCCTCACCAGCACAGACCTGACCTCTCCTCATGGGGACCAGTTCCTGGTGGCCCTTGGGAGCCAGAAAATGGTTAGGACAGATGGGAGCAAGTCCACCCAGAAGATTCGTATTGAGATGCCCAAGGTGGATGCAGTGTTTGTGGGCACGGGGGACCTGTTCACTGCCATGCTCCTTGCCTGGAGCCACCACCACCCCAATGACCTGAAGGCTGCCTGTGAGAAGACTGTCTCAGTCCTGCACCATGTTATCAAGAGGACCATCACCTATGCCAACGagATGGCCGGCCCTGGTAAGAGACCCAACCCTGCTCAGTTGGAGTTGAGGATGGTCCAGAGCAAAAAAGACATTGAGGACCCGGACATCGTAGTGGAGGCCACCATCTTATAACACCTAACGCCTCATAAATAGACATATAGGACTTTTACATCATGAGGTGTCATCTTGCCTTATAGGATCTTGTAGAGAGCACTGTTTTCATGATAGACATCACACTATTTGGcctgcacaccacacacacacttacttagtCACTGCCGTGTGTCTTTACTATGACCCGAGCATTGTCACCCATTTTAAAACATAGATGGTCTTAGAGCAGGGTTGTTTAACTTTTCTCAGCTTGAGATCCAGTTGAGAAATTGACCGTCCTTCCGTGACCCAATTAATCCTCTAACGACCCAAATTAAGAATAGTGTGTGATTTTTATAGATGTATTCTCATAACCCACAACCCACCTCTCACATTACCCAGGGCCTACTTTGGGTCCCGATCCATAGTTTCAGAAACCCTATCTTAAGAGGAACACACACAGGTTGTGGATATTACCATACATCAGAATAGTGAAGTGACTGTATGGATTGGCCCTCAATACGGCATAGGTATTTTCATGGGCCCTGAATTTCCCCTGACAATGTGAGCTGACCAGGAAAATCTCTGCGCTTCGGTTATGGGTTGGTGATACATCATAGGCTTTTATCAGATCCAGTGACGCATTATATTTGTGCTACCATGAAGCATGTTATGCAGTACTAATCCACGTTTGATCATCAGATTTTCAATTgtccattttttaaaatattttaggCAGAAAGTATAATATTTCATAGATTGACAATTGTACGTTTTTGTTTTCATACTTTTTAATGATGTGAATGATACATACATGTATTGGACTATTAATGTACTTTGTCCTAATAATAATGCTTGTCATTCTTAAATGTCTTACACATTTCTAACTGAGGTAACAATATTTGCACAGATAATCATGATAAACATGTTTGTTATTAATGTTAATCATTGAATGCTTTTCATGGTCTTGATTGTCTTACTATTTTCATATCGTTACTAGAACACAGGCCTGTGTTGGTATGAAAAAGTAACATTTGGCCTTAGTGGAGTCGTTTAGAGGAATACCGTTGTCGAATGTTTTCTATCTATGCCTGCAAAGgtaatgaaataaatatttattaTACAATGTTACAAAGATAAGTGCCAAAGCTGAAGCTCTGATAAATGATGAGGAATAATAAAATATTTTAATTAAACCCACCGGTCTCTGTAGTTGGGCCTCTATGCCTCATGTTCCTGTTGCTATGTGTCCCTTGAGTGGGATTACAGTGAGATCAGTAGTGTTCTGTTCTACAGTCCTATTAGAGAGTGTGAATAGGAGCAGGCTTTAGCTTCGTTTTGCACTATTAATTGATGCCACAGGTATTGGTGCCTGGAAATGAATGATTTATGCCACCAGTGAGTCTCTATTTTCTATATTATTTTGTTTGTGCTTATACTAATGGAAATGACGATGCCACAAAAGGTGAATGTTGGAGATTAAATAAATTGGAGGAATATTACAGAGAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0009443 pyridoxal 5'-phosphate salvage biological_process
GO:0016310 phosphorylation biological_process
GO:0008478 pyridoxal kinase activity molecular_function

KEGG:

id description
K00868 pdxK, pdxY; pyridoxine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579756.2 True 2745 mRNA 0.43 11 42801020 42823612

Neighbor

gene id symbol gene type direction distance location
LOC110501898 LOC106582438 coding downstream 3528 42770253 ~ 42797492 (-)
LOC110501897 LOC106582436 coding downstream 52443 42740619 ~ 42748577 (-)
LOC110502155 psd12 coding downstream 195252 42603998 ~ 42605768 (-)
LOC110501896 LOC106582434 coding downstream 197571 42592218 ~ 42603449 (-)
LOC110502152 LOC106582422 coding downstream 901280 41798454 ~ 41899740 (-)
LOC110501902 LOC106582441 coding upstream 226792 43050404 ~ 43056474 (-)
LOC110502158 LOC100137092 coding upstream 235937 43059549 ~ 43067135 (-)
LOC110501903 LOC106582442 coding upstream 275720 43099332 ~ 43101649 (-)
LOC110502159 NA coding upstream 330175 43153787 ~ 43159661 (-)
LOC118943590 NA coding upstream 669673 43493285 ~ 43498392 (-)
G1812531 NA non-coding downstream 23471 42776165 ~ 42777549 (-)
G1812523 NA non-coding downstream 51752 42748930 ~ 42749268 (-)
G1812517 NA non-coding downstream 75320 42725200 ~ 42725700 (-)
G1812516 NA non-coding downstream 76272 42724530 ~ 42724748 (-)
G1812512 NA non-coding downstream 79717 42720973 ~ 42721303 (-)
G1812565 NA non-coding upstream 34019 42857631 ~ 42857840 (-)
G1812574 NA non-coding upstream 38514 42862126 ~ 42862341 (-)
G1812589 NA non-coding upstream 48239 42871851 ~ 42872125 (-)
G1812591 NA non-coding upstream 50020 42873632 ~ 42873868 (-)
G1812593 NA non-coding upstream 51102 42874714 ~ 42875584 (-)
G1812404 NA other downstream 123260 42677257 ~ 42677760 (-)
G1812079 LOC106582433 other downstream 411747 42386822 ~ 42389273 (-)
G1811042 NA other downstream 1195789 41604974 ~ 41605231 (-)
LOC110501886 rhg15 other downstream 1335373 41447899 ~ 41523764 (-)
LOC110502171 LOC106582464 other upstream 1686795 44473683 ~ 44553607 (-)
G1814480 NA other upstream 1849835 44673447 ~ 44673888 (-)
G1815615 LOC106582489 other upstream 3015138 45838750 ~ 45840982 (-)
G1816841 NA other upstream 4401939 47225551 ~ 47226646 (-)
G1816929 NA other upstream 4577510 47400985 ~ 47402047 (-)

Expression


Co-expression Network