LOC118943595 (LOC106582449)


Basic Information

Item Value
gene id LOC118943595
gene name LOC106582449
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 45419885 ~ 45432246 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959084.1
ATGGAGAAACATGAAGATGTTCAACACTGTTTTAAGGACAGAAACTCTTCTTGCAGAAAGGCTTTGCTATCGACATCTATCTACATAACACTGTACATCTTCTTCTCATTGATTTCAGCAGTTACAGTATTTTTGAACATACTGGTGatcatctccatctctcacttcAAGCAGCTCCACACTCCAACCAACCTGctcatcctctctctggctgCATCAGATCTCCTGGTGGGACTGATTGTGATACCAGTAATGACTGTAGCAACAATGGAATCATGCTGGGGTTTTGGGggatatttctgtgtgtttcatgCCTACATTGCTTCTTTATGGACTTCTTTAACTCTGGGCAATTTGGTCTTGATATCTATTGACCGCTATGTTGCTGTGTGTGATCCCTTATTGTACCActctaaaataacaataacaagaatCATGTGTTGTATATCCATTACCTGGTGTTGTTGTATCATATACCGTGCTGCTAATATACAATATTTTGTAAATGTACAGGTACGAAGTAGGTGTTTGAAAGAATGTAATACTGTTGAAGAGTCTGTCTGGGTTAATATCACTGATCTTGTTATTACAATGGTTGTCCCGTGCTCTATAATTATAACACTTTATTTGAAAATCTTTGTGGTGGCCAGATCACAGGCCAGAAAGGTATTTTCAAAAGAGACTCCCAGTGTGTCTGGTGTTAAAACTGTACAAGCAAATAAGTCTGAGAGAAAAGCAGCAAAAACTCTAGCTATTGTTGTTTTCAACTATCTATTTTGTTGGATTCCATCtctatttattttcttatttttttctattttaaGTGATAATTTACTATCATATTTCATCAATTTTCTGGCACTTGTTAATTCTTTAATTAATCCAATCATTTATGCTTTCCTTTATCCATGGTTCAAACCACAACCCAGGGTCAGTGATGCAGCACCACCCCGGGCTGCATCACGTACGTGCTCTAAAGAAGTTAACACATCCATCTACACAGACGTCAGCAACGCAGCCAAGGAGAACAGCCTGCAGGTATATGTCTCCACCAGTATCTTTGTTCAGAACCAGGTCTAG

Function

NR:

description
trace amine-associated receptor 13c-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959084.1 True 1080 mRNA 0.39 3 45419885 45432246

Neighbor

gene id symbol gene type direction distance location
LOC110502174 LOC106572616 coding downstream 54072 45343530 ~ 45365813 (-)
LOC118943612 NA coding downstream 452751 44965636 ~ 44967134 (-)
LOC110501930 hoxd12ab coding downstream 457006 44959757 ~ 44962879 (-)
LOC110501928 hoxd11ab coding downstream 463820 44954300 ~ 44956065 (-)
LOC110501926 hoxd10ab coding downstream 469515 44947662 ~ 44950370 (-)
LOC110501936 LOC106572616 coding upstream 24980 45457226 ~ 45458628 (-)
LOC118943614 gdf3 coding upstream 87601 45519847 ~ 45520832 (-)
LOC110501935 gdf3 coding upstream 100851 45533097 ~ 45543990 (-)
LOC110501933 LOC106582484 coding upstream 118608 45550854 ~ 45578906 (-)
LOC110501943 NA coding upstream 150305 45582551 ~ 45587712 (-)
G1815396 NA non-coding downstream 4912 45375493 ~ 45414973 (-)
G1815325 NA non-coding downstream 176872 45242797 ~ 45243013 (-)
G1815317 NA non-coding downstream 187861 45223160 ~ 45232024 (-)
G1815311 NA non-coding downstream 197097 45210074 ~ 45222788 (-)
G1815463 NA non-coding upstream 113887 45546133 ~ 45546419 (-)
G1815466 NA non-coding upstream 116139 45548385 ~ 45548871 (-)
G1815472 NA non-coding upstream 135535 45567781 ~ 45642292 (-)
G1815475 NA non-coding upstream 144277 45576523 ~ 45576888 (-)
G1814480 NA other downstream 745997 44673447 ~ 44673888 (-)
LOC110502171 LOC106582464 other downstream 866465 44473683 ~ 44553607 (-)
G1812404 NA other downstream 2742125 42677257 ~ 42677760 (-)
LOC110502155 psd12 other downstream 2814865 42603998 ~ 42605768 (-)
G1812079 LOC106582433 other downstream 3030612 42386822 ~ 42389273 (-)
G1815615 LOC106582489 other upstream 406504 45838750 ~ 45840982 (-)
G1816841 NA other upstream 1793305 47225551 ~ 47226646 (-)
G1816929 NA other upstream 1968876 47400985 ~ 47402047 (-)
G1817287 LOC106582526 other upstream 2039048 47471294 ~ 47473384 (-)
LOC110501953 ihh other upstream 2629803 48057851 ~ 48064453 (-)

Expression


Co-expression Network