XLOC_037135 (ints6)


Basic Information

Item Value
gene id XLOC_037135
gene name ints6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 23825440 ~ 23841704 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073099
AGTGTGAGGAGAATCATGGACGTAAACTAAACAGAAAGTTACCATGACAAAAGTtaggcatttatttaaaattacagcAACAACACCCGTTTCCCTTGTAAATCAACAACCTTTCCCCCCCAGGGTCTGAGGTTTGCTTAAGTTTACAAGGCATCGCTCTTTCAACAATAACTACAGTTACACTCTTGACAGAAAGAATGCGCGAGTCAGTTAGCATTAGCCGGCTAGCAGCGTGCTGACAGCAGCGACAGGAGGCGAACAAAAGATTGCTCTGCATTTGTCCGATTTCACTGACACTCGGTCCATGTAGAAGGGGCGAATATCAACACAATGCCCGTGCTACTTTTTCTAATAGACACGTCCGCCTCCATGAACCAGCGCTCCCATCTGGGCACTAGCTATCTGGACATAGCGAAGGGCGCAGTTGAGACTTTCCTGAAGCTGAGAAGCAGAGATCCGGCCAGCAGGGGAGACAGATACATGTTAGTGAGTTTCGAGGAAGCGCCGGCTGGCATTAAGGCTGGATGGAAGGACAGTCATGCCACTTTTATGACTGAGCTAAGGAACCTGCAAGCAGTTGGACTGACATCGTTTGGCCAAGCTTTAAGGACAGCTTTTGATTTGCTCAATCTTAATAGATTAGTTTCAGGGATAGACAACTATGGACAGGGTAGAAACCCTTTTTTCTTGGAACCTGCTATCATTGTGGCCATAACTGATGGCAGCAAGCTGACTGGCAGCTCTGGGGTACAAGATGAGTTACATTTACCGTTAACAACACCATTACCTGGCAGTGAACTGACCAAAGAGCCCTTTCGATGGGACCAGCGACTCTTCTCTTTAGTGCTGCGTGTTCCAGGCCATGCCTCTGCTGACCCTGAACCAGTGGGTGGAGTTCCACTCGACTCCTCCCCTATTACACCCATGTGTGAGGTCACCGGAGGCCGATCATACAGCGTGTTTTCCCAGAGAATGCTGAACCAGTGCCTGGAGTCTTTGGTACAGAAGATACAGAGTGGTGTGGTCATCAATTTTGAGAAGACTGGACCTGATCCTTCTCCTACTGAAGATGGTCCAATAGAGGTGAAGCATGGACCTCAAGTATGGCACAGCTGTCATAAATTGATCTATGTGAGACCCAACCCTAAAACTGGTGTACCTGTTGGCCATTGGCCTATCCCTGAATCCTTCTGGCCTGACCAGAACTCTCCTACTTTGCCTCCACGTGCAGCTCACCCTCATGTGAAGTTTTCATGTGTGGATTCGGAGCCCATGGTGGTAGATAAAGTGCCCTTCGACAAGTATGAGCTGGAGCCTTCCCCGCTCACCCAGTACATTCTAGAGAGGAAATCACCACATACCTGCTGGCAGGTTTTTGTGTGTAACAGTGCTAAATATGGAGAACTGGGTCAACCGTTTGGATATCTGAAGGCTAGCACAGCTCTCAACTGTGTCAACCTGTTTGTTATGCCCTATAACTATCCTGTGGTGCTTCCATTGCTTGATGACTTAATTGTTGTGCATAAGTTCAAGCCTCCAGTGAAGTGGCGACAGTCTTTTGAAAATTATCTTAAAACAATGCCCCCCTACTACATCCCAGCCCTGCGGAAAGCATTAAGAATGATGGGGGCTCCAAACCTGTTAGCAGACAACATGGAATATGGCCTCAGCTACAGTGTTGTGTCTTATCTTAAAAAGCTCAGTCAGCAGGCGAAGATCGAGGCAGACCGAGTTTGTGCTTCAGTGGGAAAAAAAGTGGCACCAGAAGGTGGAATTAAACTTCGTTGTAGGAGCTCTGCTCTATCCCTGGCAAACAGGAAGGATTTCACACAGCTTCTGCAGAGCATCATGGGAGATGGACCAGCACTTCCAATGGAGGCAAACACCAAGGAGTTTGCTGGCTTTCAGCTGGCTTCCTTGAATAAAGCATTAAAACCACAGGGCTTGCGCAACCCTTACGATATCCCAAGAGCTCATCTTCTGGACCAGCTGAGCCGCATGAGGAGGAACCTTCTGCATGCCAGTATCTGTATTCTCAAAGGGCAAGATCAAGATCAGCTTCACAGTGTGCCTATAGCTCAGATGGGCAACTATCAGGACTTCTTGAAGCATTGCCCATCACCTCTGAGAGAGGCAGACCCTGATCAGCCCAAACGTCTGCACACCTTTGGTAACCCCTTTAAACTGGACAAGAAGgccATGATGGTGGATGAGGCAGATGAGTTTGTTACTGGCACTCAGGGCAAAGGCAAACGTCCTGGTGAGTCCAGCAGTCCTACTGTGGGAGGGGCACCTAAACGCAGGCGCTGCATGTCTCCATTGCTTCGGCCTGGACGGGCATATACACCTCCTAGAACACCATCCAGAACTCCCGATAACAATCACTTGGAATTGGAAAACCATATCACCAATCATCTCGAGCCAAACTGCGACTCGGACAGCGATATAAATCCTGTGCCGGAGTCTGAAGTGATCCAGCAAAGCAACCATCTCCAGACAGAAGAGGTTGAGAACCAGCAGGACTGCGTGCAGGAGAATGGCCAGTCCAGTGACAGTGAGCTGTCTTTGGGAAGCGAGGGGGAAGAGGAGGCCCCGCACCGCTACCAGTACCCCTGCCAGCTGAAGAAGATCAGAAACCAGGAGAGCCAGGAGCTCAACTCTGAACTCCGAGTGCTCATCACCAAGGAGATCAGGAAACCTGGAAGACGTTATGAGAAAATCTTCTACCTTCTCAAGCAAATCCAGGGCAGTTTGGAAACGCGCCTGATCTTCTTGCAGAGCATAATCAAAGAGGCTGCAAGATTTAAGAAGAGGGTCTTAATCGAGCAGCTGGAGATTTTCATAGAGGAGATTCACTTAAGAGCCAACGGCATGAATCATCTGGACAGTTTCTGAGCACTCCATCTGCCCTACTTGAAGGACTCGAGCACTGATCTGCACTATTTATGTAACGTTACATGGGACTCGTGTGTCTCCGGTCTTTATCAGTATTGAATCTGATTTTATGGACAAGGACTTTTGTTGGGTTGTCTCTAAACCTCAGGATTGTGGAATATGGGAAGTGTTGCCCTTTCTATAACACATGGTCATAAATATGCACTGCTTTCTTAAGCTCTCTTCTCCCCTCATCTGCTCATTTGTGTTGTTGCATTTACCAACATTGCCAATGATTGCCAATATAAACATGTCATTCAGGAATATGCTCTGCAAGCTCACCAAACCAAACACTCGTATAAAGAAACTAAATCAGCAATATTCTACACCAATAAACAGGCCAATTCTTTATGTTTGGAGATATGACCGaggttttataattaaatatagacTTGCACACTCCAGAAGTCGTCATTGTTTGAAAAATAACATCTCAGGAATGATGGTGTTGCAGAAGACATTGTTCTTGAAATGTTTCCTGATGCCCTTACAGACCATTGTTGTTACACATGGCTTCAGTATAATTACAGCAACTGCTTAATTGCTATCAAAACACATTCTGTGGTTTTTAGACCACTAAACCATGGCAAAAGTCTGTTTGAAACCAAGGACTGTAAAATCTACATAGGCTAacctaattttaattttaaagaagCAACGTCTGAATGGTGATACAAAGGAAACATTCTAACAATGTAGCTGCTGTTTAAACATCCAGGACAGAGTTAAGAGCTACTTAATTACTgccatggattttttttttttttgctgctaatgtattCCTACATTACTGCCAAATATGTAGTATCCCTTAgccttattttctttttctgtaggGTTTGTCTTTGAGTCTCTGTCTCTTAACCCAGCACCCTAATGTTGGACCAATTCTTTGCCATACATGTTATATGGTGAAAGGTGAATCTGTGGCTTCTTGCGGGagggaggattttttttttttttactatgctgTATATATTGTACATGGTGACcctgaaaatataatttaaaagtaTGTTTTGGTAAAAAGCCTGTTTCTATGTATTTGAATAAAGTCTATTTTACGCTGTGAATAGttatgtaaataaatgacttGCATTCTCAGTGACGCAACGTCATTCAAAACGACAGCAAA

Function

symbol description
ints6 Predicted to be involved in snRNA 3'-end processing. Predicted to be part of integrator complex. Orthologous to human INTS6 (integrator complex subunit 6).

GO:

id name namespace
GO:0034472 snRNA 3'-end processing biological_process
GO:0032039 integrator complex cellular_component

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-070906-1 Predicted to be involved in snRNA 3'-end processing. Predicted to be part of integrator complex. Orthologous to human INTS6 (integrator complex subunit 6).

Ensembl:

ensembl_id ENSDARG00000013025

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073099 True 4069 mRNA 0.45 18 23825440 23841704

Neighbor

gene id symbol gene type direction distance location
XLOC_037134 dhrs12 coding upstream 12804 23808546 ~ 23812636 (+)
XLOC_037133 si:ch211-219a4.3 coding upstream 45915 23765587 ~ 23779525 (+)
XLOC_037132 faima coding upstream 70103 23748133 ~ 23755337 (+)
XLOC_037130 gypc coding upstream 106826 23665777 ~ 23718614 (+)
XLOC_037131 BX957274.1 coding upstream 124984 23696924 ~ 23700456 (+)
XLOC_037136 NA coding downstream 42652 23884356 ~ 23887281 (+)
XLOC_037137 cops8 coding downstream 54007 23895711 ~ 23906205 (+)
XLOC_037138 trim63b coding downstream 58999 23900703 ~ 23902215 (+)
XLOC_037139 mlphb coding downstream 167175 24008879 ~ 24023369 (+)
XLOC_037140 prlh coding downstream 183323 24025027 ~ 24025404 (+)
XLOC_037127 NA non-coding upstream 369095 23363848 ~ 23456345 (+)
XLOC_037128 CR392363.1 non-coding upstream 458231 23364242 ~ 23367209 (+)
XLOC_037126 NA non-coding upstream 491461 23321834 ~ 23333979 (+)
XLOC_037122 NA non-coding upstream 697209 23126156 ~ 23128231 (+)
XLOC_037147 BX571803.2 non-coding downstream 542430 24384134 ~ 24387531 (+)
XLOC_037148 BX571803.4 non-coding downstream 582088 24423792 ~ 24427240 (+)
XLOC_037151 BX323457.3 non-coding downstream 1224957 25066661 ~ 25067730 (+)
XLOC_037152 BX323457.2 non-coding downstream 1231835 25073539 ~ 25074199 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_08337497_08351090 INTS6 coding CI01000009 null 8337018 ~ 8352070 (-)