G1788815 (LOC100136012)


Basic Information

Item Value
gene id G1788815
gene name LOC100136012
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 21998473 ~ 21999623 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2047594
attttacatgattccatacagtggggagaacaagtatttgatacactgcaaaATCGGAAGTGTTTCCCTACTTACacagcatgtagaggtctgttatttttatcataggtacacttcaactgttagagacagaatctaaaacaaaaatccagaaaatcacattgtatgatttttaagtaattaatttgcattttattgcatgacataagcatttgatcacctaccaaccagtaagaattccggctctcacagacctgttagtttttctttaagaagccctcctgttctccactcattacctgtattaactgcacctgtttgaacttgttacctgtctaaaagacacctgtccacacactcaatcaaacagactccaacctctccacaatggccaagaccagagagctgtgtaaggacatcagggataaaattgtagacctgcacaaggctgggatgggctacaggacaataggcaagcagcttggtgagaaggcaacaactgttggcgctattattagaaaatggaagaagttcaagatgacggtcaatcacccttggtctgaggctccatgcaagatctcacctcgtggggcatcaatgatcatgaggaaggtgagggatcagcccagaactacacggcaggacctggtcgatgacctgaagagagctgggaccacagtctcaaagaaaactatTAGTAACACacacgccgtcatggattaaaatcctgcagcgcacgcaaagTCCCCCTGCTCAAACCTGCGCATgtacaggcccgtctgaagtttgccaatgaccatctgaatgatccagaggaggaatgggagaaggtcatgtggtctgatgagacaaaaatagagctttttggtctaaactccactcgccgtgtttggaggaagaagaaggatgagtacaaccccaggaacaccatcccaaccgtgaagcatggaggtggatcatcattctttggggatgcttttctgcaaaggggacaggacgactgcaccgtattgaggggaggatggaaggGGCCATgcatcgcgagatcttggccaacaacctccttccctcagtaagagcattgaagatgggtcgtggctggttcttccagcatgacaacgaccagaaacacacagccagggcaactaagg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2047594 True 1151 TUCP 0.46 1 21998473 21999623

Neighbor

gene id symbol gene type direction distance location
c22h2orf69 cssa21h2orf69 coding upstream 63768 21929362 ~ 21934705 (+)
LOC110501590 LOC106581697 coding upstream 297180 21669516 ~ 21701293 (+)
LOC110501589 LOC106581698 coding upstream 331070 21628544 ~ 21667403 (+)
LOC110502066 NA coding upstream 1053302 20943924 ~ 20945171 (+)
twist2 twist2 coding upstream 1632941 20359640 ~ 20365532 (+)
esyt3 LOC106581688 coding downstream 35749 22035372 ~ 22076238 (+)
LOC118943635 NA coding downstream 76754 22076377 ~ 22079829 (+)
LOC110501601 LOC106581998 coding downstream 233641 22233264 ~ 22235783 (+)
LOC110501603 NA coding downstream 1044993 23044616 ~ 23050204 (+)
LOC110502117 NA coding downstream 1053415 23053038 ~ 23055743 (+)
G1788810 NA non-coding upstream 3514 21994652 ~ 21994959 (+)
G1788808 LOC106581691 non-coding upstream 5150 21992764 ~ 21993323 (+)
G1788807 NA non-coding upstream 6078 21991796 ~ 21992395 (+)
G1788806 NA non-coding upstream 6857 21991336 ~ 21991616 (+)
G1788805 NA non-coding upstream 7257 21991000 ~ 21991216 (+)
G1788816 NA non-coding downstream 527 22000150 ~ 22000375 (+)
G1788817 NA non-coding downstream 1220 22000843 ~ 22001238 (+)
G1788823 NA non-coding downstream 7678 22007301 ~ 22007561 (+)
G1788836 NA non-coding downstream 20338 22019961 ~ 22020173 (+)
G1788811 LOC106581691 other upstream 2380 21995364 ~ 21996093 (+)
G1787719 NA other upstream 861996 21134265 ~ 21136477 (+)
G1786330 NA other upstream 1713902 20283181 ~ 20284571 (+)
asb1 asb1 other upstream 1716619 20269646 ~ 20281952 (+)
G1785947 znf142 other upstream 2336547 19661109 ~ 19661926 (+)
G1790442 LOC106582152 other downstream 1416470 23416093 ~ 23432383 (+)
G1790805 NA other downstream 2118939 24118562 ~ 24119475 (+)
LOC110501605 LOC106582130 other downstream 2394445 24394068 ~ 24423067 (+)
G1792040 NA other downstream 2843319 24842942 ~ 24843285 (+)
LOC110501609 fam155a other downstream 2849343 24848514 ~ 25013655 (+)

Expression


Co-expression Network