LOC110501605 (LOC106582130)


Basic Information

Item Value
gene id LOC110501605
gene name LOC106582130
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 24394068 ~ 24423067 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958965.1
CTTCTCTTTTTTTGTAACTAAAGCTTGACGTGTAGAACGTCACACGTTGTTTCTCTCTTCACTTCGGTAACTTAGCGATATGGGTTATTTACTGTTAAACTGTTACATACGCCGGACGCACAACCGGCGCCTGGAGTGAAACAGAGCCTTGGAGAGATACGGACTATAAACTACAGTTGATCTCTCCAGCCTTCGATAAGTGAGGATATAACAACAGGTTAAGGAAAGTGAGTTGTTAAAAAAAACGATAGAATGGCAAATCCACCAAATACTGGAGGACACTTGTTATCCAACGCGAatattaacaacaacaaaattaaGAAATGTGGATACCTCAAGAAGCAGAAGCACGGACACAAGCGATTTTTCGTTCTGAAGGAGCCGAGCGAGGGTTTCCCTGCCCGGCTGGAGTACTACGAGAGCGAGAAGAAATGGAAAAACAAGTCGGCGGCAAAGAGAGTTATTCCGCTGGACTGCTGCCTCAATATCAACAAGAGAGCGGACTCCAAACACAAACACCTTATCGCCCTCTATACCAAGGACGAATATTTTGCTGTGGCAGCAGAGAATGAACAGGAGCAGGAGAATTGGTACAGAGTcttaactgatttaatgagcgaGGGGAAAGTGTACTCAGACGGCTCCGCATCCAATTCCGCGTCCTCGCTGGTGGGGTTTGATGAGGGGAACTACGGGATGATTACGCCGGTAACGGCTGTGTATAAGGAGGTATGGCAAGTTAACCTAAAATCCAAAGGGCTGGGACAGAGCCGGAATCTTACCGGGGTGTACAGGCTGTGCTTATCCAGCCGGACTATCAGCTTTGTGAAGCTCAACTCGGATGTTGCGTCCGTCAGTTTACAGCTGATGAACATTAGGAGATGCGGGCACTCGGAGAGCTTTTTCTTCATCGAAGTCGGCCGGTCAGCAGCCACAGGACCCGGCGAGCTGTGGATGCAGGCTGACGACTCCGTTGTGGCGCAAAACATCCACGAGACTATTCTGGAGGCGATGAAAGCCATGAAGGAGCTGTCAGAGTTCCGGCCGCGCAGCAAGAGCCAGTCATCGGGCACTAACCCCATTTCCGTGCCCACCCGGCGGCACCACAACAACCTTCCCCCAAGCCAGACCGGGCTCCAGCGACGGTCGCGCACTGACAGCATGGCCAAAAAGTCCCCCATGAGTAAATTCACCTCCTGTCGGATACGCACTGCCAGTGAGGGAGATGGCACCATGGCGCGCACCTTGCCTGTGAACGGGAGTCCCCTCAGCCCTGATATTCACCGGACCCTATTAGGGAGCTCAAACACCATCACAGCCCAGCACTGCCGGACATTTGAATCCTCTTCCCTCCAGCACAGTAAGTCCATGTCCATGCCTCTGTCCCACTCCCCACCCACAGCCACCCCCAGCCCTGTCAGCCTGTCCTCTTGCTCTGAAAGCAGTGCTCCTCGCCCCTCCAGCTGCAATGCATCTGTCTCTGGCTCCCCCAGTGATGGCGGCTTCATCTCCTGTGATGAGTATGGCTCCAGTCCTGCAGCCCTGTACCTCACTCGCAGCAGTAACACTCCAGAGTCCCTAAGGGCAGACACACCCCCCTCCCGGGATAGCAACGACTTGCATGGCTACATGGTGATGGAGAGGCAGAAACAGAACGGTTTCCGCCGGTTACCAGAGCTGGACAAGGCATACCGGAAACGCACATACTCCCTTACCACCCCGCCCCAGCACAGGGCGCCGCCACAGGTCTCCTCCACCTCATTGGACGAGTACACGCTTATGAGGGCCACCTATACCAGTAGCGGCCAATCGGGTCGCAGCTCTCACACCGCCTCCCCGAAAGTTACCTATCCTGAGGACTATGGTGATGTCCAGATAGGCTCCAACGGTCACCTAGGTGACTGTGGCTACATGCCCATGACTCCGGGCATTGCCGCTCAGACAGGGTGGGTCAAAGGTGATGCTTATATGCCCATGAGCCCCATGTGTGTGTCGGCCCCCAAGCAGATCATCAACCCCCGCTCTCACCCCTCTCCAGCTGGGCTCTGCTCCCATACCGACTCCCCTGGAAGCGTGTCTCTGGAGGACAGCGGCTACATGAGAATGTTCTGCGGGGCCAAGATGTCTGTGGACAGCTCCGACGGGAAGCTCACCAACGGGGAGTACCTCAACATGTCCCCTGTGGACCCCGTGGTCTCCCTCACCCCCCCAGACTACATCCTCACAGACACTACCCCCCAGCTTCACCCTCACCACAGACAGCCTTACTCCATCAGTTCCCTGCCCCGCTCTCTCAAAGCCCAGCCGCAGAGGAAGGGAGTTACAGACACAGACCAGTACGTGGTGATGAGTCTACAGAAGAAGAGGATAGAGGAAGAATCCAACTACTGTCCCATCTCACCTGTCTGCTCCGCTACACCCCccacctccactctctcctcagcCCCCTCACCCCTCAGAGCCGGCACGGTCACTCAGGAGGGGGGTCTGGTCCACAAGGGGAGGGTGAGCCGGCCTACCCGGCTGGCCCTGGACTCTCTAAGGACGCTGCCCTGTATGATCGAACACCCCCTCCCCTCTGAGCCCAGGAGTCCCGGGGAGTACATCAACATTGACTTTGGCAACACTACACGCTACCCGCCCATCTCCGCCATGACTGAGCGCTCTCGTTCATCACTGGGCTCGGTGGACGGGCTGATGAGGAGTTCCCCGCCACTCTCCGATTACGTCAACATTGACGTCAGATCGCACTCTCCCAAACACGGCGATTCCCCTTCTTCAATAGGGTGCCTGGAGCCGAGTTCAGTGCTTCCCTTGTGTCCCAGCCAGCCTCCCAGAGAAGagcagagggagagtgaggaaCAGGAGAAGATAATCGTTGTGGAATATCCTCTCCAAAAGCTTGCAAGCCCTGTATACCTGGTTGGTGATGTAAAAGACGACTACACTGAGATGACCTTCAGTCCTACCAAcccccctccctctgcccctctccctgccaccctgtGCCCCTCTGCTGCCACCACCCCCCTGCCCACCAGCCCGTCTGCCTGTGTCCAGAGACTCACCCTGAGGGGAGAGGGTACAGTGGGGTCCCCCCCGGTTCCTGTCGAGAACTTCTTCCTTGGGTGTccgtccctctccatctcccctgtcAACCCAGACAAGGGGGCAAAGGTGATCCGGGCTGACCCCCAGGGGCGCAGGCGCCACAGCTCAGAGACCTTCTCCTCCACCACCATGGTAACGCCAGTGTGCCCGTCGTTCGCCCCTGATGCCAACAAGCGGCACAGCTCGGCATCGGTGGAGAACGTGTCGCGGCCGGTCCGGAGCTCGGAGGGTTCAGATGAAGAGTACGGGAACAGCATCAGCCCCATGTGCCGGGAGACGTCGGCAGGCTACCAGAATGGACTTAACTACATTGCCTTAAACCTGATGGAAGGGAGCCTGGGGGGTTGCAGCACTCTGGGGGGCAGTGAGGGACTGCTGAGGTTCAAGGCAGCGTGTGGATGCAAGGGGGGCATGAACGGTTTTAACACCAGCCCCTATGCCACAATGGGCTTCAAGGAAACTGCAACAGCAGTGAAAGGGCTGGGTGCAGTCTGTGCACTGGGTCCCCCAGAAAAACAAACTGAACACTGATGGCACCGCCCCCTCTTACACCCCCTgttcctcgctccctctctcttgttcGCCTGGCTGTGAATGAGGGATAAATCTGCAGCCCAGTGACAAAGTCGCCACGCAGACAGCTGGACCATGTGCTGCAGTAGACAACCTTTAACCTCCACTATCCCCTCCCCAGGGGTCAACGGGACCACCATCGTCACGGCAATGTGGACACCCCCCCTTCCAAGCTTCCTATCCTCCCCACATTCGGCACCCAAATATTAAGGGTCCGTCGCTGCTGCTCTCTGAACAACTACAACTTAAAGGACTGTACTCATCGATGAATATCTATGTACATACAAAGTTACTTCTgcaaaataattattataattattattattattccactGGTTTTCATTTGGCTTTGGCTGACAGGGCCAGTTACCCTCACTTTAATAACCTGTGAACCAAACCTGGAGATATTCCACACACTCCCACTCCCACACGTTATATATACGTACACatcacatatttatttatttatgcactttgttgtgtatatgtgtttgtgtggatgtgtacaCTAAATTTGTACGAAAGAGAGTTGGCATTTTACGAACATATTCAGTATATAACAATGTACTAAGTTAACAGTTGCTTAAAAGCCTACCTCAGAGCAAACCAGGTTAGTACTTATTTACACACCAgaattgtacaaaacattaggaacacctgctctttccatgacataaactgatcagttgaatccaggtgaaagctatgatcccttattgatgtcacttgttaaagccacttcaattgagacatg
>XM_021579289.2
TTCTCTTTTTTTGTAACTAAAGCTTGACGTGTAGAACGTCACACGTTGTTTCTCTCTTCACTTCGGTAACTTAGCGATATGGGTTATTTACTGTTAAACTGTTACATACGCCGGACGCACAACCGGCGCCTGGAGTGAAACAGAGCCTTGGAGAGATACGGACTATAAACTACAGTTGATCTCTCCAGCCTTCGATAAGTGAGGATATAACAACAGGTTAAGGAAAGTGAGTTGTTAAAAAAAACGATAGAATGGCAAATCCACCAAATACTGGAGGACACTTGTTATCCAACGCGAatattaacaacaacaaaattaaGAAATGTGGATACCTCAAGAAGCAGAAGCACGGACACAAGCGATTTTTCGTTCTGAAGGAGCCGAGCGAGGGTTTCCCTGCCCGGCTGGAGTACTACGAGAGCGAGAAGAAATGGAAAAACAAGTCGGCGGCAAAGAGAGTTATTCCGCTGGACTGCTGCCTCAATATCAACAAGAGAGCGGACTCCAAACACAAACACCTTATCGCCCTCTATACCAAGGACGAATATTTTGCTGTGGCAGCAGAGAATGAACAGGAGCAGGAGAATTGGTACAGAGTcttaactgatttaatgagcgaGGGGAAAGTGTACTCAGACGGCTCCGCATCCAATTCCGCGTCCTCGCTGGTGGGGTTTGATGAGGGGAACTACGGGATGATTACGCCGGTAACGGCTGTGTATAAGGAGGTATGGCAAGTTAACCTAAAATCCAAAGGGCTGGGACAGAGCCGGAATCTTACCGGGGTGTACAGGCTGTGCTTATCCAGCCGGACTATCAGCTTTGTGAAGCTCAACTCGGATGTTGCGTCCGTCAGTTTACAGCTGATGAACATTAGGAGATGCGGGCACTCGGAGAGCTTTTTCTTCATCGAAGTCGGCCGGTCAGCAGCCACAGGACCCGGCGAGCTGTGGATGCAGGCTGACGACTCCGTTGTGGCGCAAAACATCCACGAGACTATTCTGGAGGCGATGAAAGCCATGAAGGAGCTGTCAGAGTTCCGGCCGCGCAGCAAGAGCCAGTCATCGGGCACTAACCCCATTTCCGTGCCCACCCGGCGGCACCACAACAACCTTCCCCCAAGCCAGACCGGGCTCCAGCGACGGTCGCGCACTGACAGCATGGCCAAAAAGTCCCCCATGAGTAAATTCACCTCCTGTCGGATACGCACTGCCAGTGAGGGAGATGGCACCATGGCGCGCACCTTGCCTGTGAACGGGAGTCCCCTCAGCCCTGATATTCACCGGACCCTATTAGGGAGCTCAAACACCATCACAGCCCAGCACTGCCGGACATTTGAATCCTCTTCCCTCCAGCACAGTAAGTCCATGTCCATGCCTCTGTCCCACTCCCCACCCACAGCCACCCCCAGCCCTGTCAGCCTGTCCTCTTGCTCTGAAAGCAGTGCTCCTCGCCCCTCCAGCTGCAATGCATCTGTCTCTGGCTCCCCCAGTGATGGCGGCTTCATCTCCTGTGATGAGTATGGCTCCAGTCCTGCAGCCCTGTACCTCACTCGCAGCAGTAACACTCCAGAGTCCCTAAGGGCAGACACACCCCCCTCCCGGGATAGCAACGACTTGCATGGCTACATGGTGATGGAGAGGCAGAAACAGAACGGTTTCCGCCGGTTACCAGAGCTGGACAAGGCATACCGGAAACGCACATACTCCCTTACCACCCCGCCCCAGCACAGGGCGCCGCCACAGGTCTCCTCCACCTCATTGGACGAGTACACGCTTATGAGGGCCACCTATACCAGTAGCGGCCAATCGGGTCGCAGCTCTCACACCGCCTCCCCGAAAGTTACCTATCCTGAGGACTATGGTGATGTCCAGATAGGCTCCAACGGTCACCTAGGTGACTGTGGCTACATGCCCATGACTCCGGGCATTGCCGCTCAGACAGGGTGGGTCAAAGGTGATGCTTATATGCCCATGAGCCCCATGTGTGTGTCGGCCCCCAAGCAGATCATCAACCCCCGCTCTCACCCCTCTCCAGCTGGGCTCTGCTCCCATACCGACTCCCCTGGAAGCGTGTCTCTGGAGGACAGCGGCTACATGAGAATGTTCTGCGGGGCCAAGATGTCTGTGGACAGCTCCGACGGGAAGCTCACCAACGGGGAGTACCTCAACATGTCCCCTGTGGACCCCGTGGTCTCCCTCACCCCCCCAGACTACATCCTCACAGACACTACCCCCCAGCTTCACCCTCACCACAGACAGCCTTACTCCATCAGTTCCCTGCCCCGCTCTCTCAAAGCCCAGCCGCAGAGGAAGGGAGTTACAGACACAGACCAGTACGTGGTGATGAGTCTACAGAAGAAGAGGATAGAGGAAGAATCCAACTACTGTCCCATCTCACCTGTCTGCTCCGCTACACCCCccacctccactctctcctcagcCCCCTCACCCCTCAGAGCCGGCACGGTCACTCAGGAGGGGGGTCTGGTCCACAAGGGGAGGGTGAGCCGGCCTACCCGGCTGGCCCTGGACTCTCTAAGGACGCTGCCCTGTATGATCGAACACCCCCTCCCCTCTGAGCCCAGGAGTCCCGGGGAGTACATCAACATTGACTTTGGCAACACTACACGCTACCCGCCCATCTCCGCCATGACTGAGCGCTCTCGTTCATCACTGGGCTCGGTGGACGGGCTGATGAGGAGTTCCCCGCCACTCTCCGATTACGTCAACATTGACGTCAGATCGCACTCTCCCAAACACGGCGATTCCCCTTCTTCAATAGGGTGCCTGGAGCCGAGTTCAGTGCTTCCCTTGTGTCCCAGCCAGCCTCCCAGAGAAGagcagagggagagtgaggaaCAGGAGAAGATAATCGTTGTGGAATATCCTCTCCAAAAGCTTGCAAGCCCTGTATACCTGGTTGGTGATGTAAAAGACGACTACACTGAGATGACCTTCAGTCCTACCAAcccccctccctctgcccctctccctgccaccctgtGCCCCTCTGCTGCCACCACCCCCCTGCCCACCAGCCCGTCTGCCTGTGTCCAGAGACTCACCCTGAGGGGAGAGGGTACAGTGGGGTCCCCCCCGGTTCCTGTCGAGAACTTCTTCCTTGGGTGTccgtccctctccatctcccctgtcAACCCAGACAAGGGGGCAAAGGTGATCCGGGCTGACCCCCAGGGGCGCAGGCGCCACAGCTCAGAGACCTTCTCCTCCACCACCATGGTAACGCCAGTGTGCCCGTCGTTCGCCCCTGATGCCAACAAGCGGCACAGCTCGGCATCGGTGGAGAACGTGTCGCGGCCGGTCCGGAGCTCGGAGGGTTCAGATGAAGAGTACGGGAACAGCATCAGCCCCATGTGCCGGGAGACGTCGGCAGGCTACCAGAATGGACTTAACTACATTGCCTTAAACCTGATGGAAGGGAGCCTGGGGGGTTGCAGCACTCTGGGGGGCAGTGAGGGACTGCTGAGGTTCAAGGCAGCGTGTGGATGCAAGGGGGGCATGAACGGTTTTAACACCAGCCCCTATGCCACAATGGGCTTCAAGGAAACTGCAACAGCAGTGAAAGACTGAACACTGATGGCACCGCCCCCTCTTACACCCCCTgttcctcgctccctctctcttgttcGCCTGGCTGTGAATGAGGGATAAATCTGCAGCCCAGTGACAAAGTCGCCACGCAGACAGCTGGACCATGTGCTGCAGTAGACAACCTTTAACCTCCACTATCCCCTCCCCAGGGGTCAACGGGACCACCATCGTCACGGCAATGTGGACACCCCCCCTTCCAAGCTTCCTATCCTCCCCACATTCGGCACCCAAATATTAAGGGTCCGTCGCTGCTGCTCTCTGAACAACTACAACTTAAAGGACTGTACTCATCGATGAATATCTATGTACATACAAAGTTACTTCTgcaaaataattattataattattattattattccactGGTTTTCATTTGGCTTTGGCTGACAGGGCCAGTTACCCTCACTTTAATAACCTGTGAACCAAACCTGGAGATATTCCACACACTCCCACTCCCACACGTTATATATACGTACACatcacatatttatttatttatgcactttgttgtgtatatgtgtttgtgtggatgtgtacaCTAAATTTGTACGAAAGAGAGTTGGCATTTTACGAACATATTCAGTATATAACAATGTACTAAGTTAACAGTTGCTTAAAAGCCTACCTCAGAGCAAACCAGGTTAGTACTTATTTACACACCAgaattgtacaaaacattaggaacacctgctctttccatgacataaactgatcagttgaatccaggtgaaagctatgatcccttattgatgtcacttgttaaagccacttcaattgagacatg
>TU2050548
gtctctcaaagcacttcatgatgacggaagtatGCCTGGGGGGTTGCAGCACTCTGGGGGGCAGTGAGGGACTGCTGAGGTTCAAGGCAGCGTGTGGATGCAAGGGGGGCATGAACGGTTTTAACACCAGCCCCTATGCCACAATGGGCTTCAAGGAAACTGCAACAGCAGTGAAAGGTGAGCCAGCGCCGACTCTGTGTggcgtgtgtgtttgcatgcttaTCATGAGCCCATTCATTCATCCAGGTGTTCATTCAAacagtcagtgtgtgtcagtgcttgagtaaAGATATCGCTTTAGTGATAGCAACCCATTTATTTGGCATATCTACCCGTTGCTAAGCAGCAGTGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958965.1 False 4438 mRNA 0.54 3 24406950 24423067
XM_021579289.2 False 4396 mRNA 0.54 2 24406951 24423067
TU2050548 True 352 TUCP 0.51 2 24394068 24410713

Neighbor

gene id symbol gene type direction distance location
LOC110501999 LOC106586666 coding upstream 82193 24264331 ~ 24324757 (+)
rab20 LOC106582135 coding upstream 249566 24148044 ~ 24157384 (+)
LOC110502026 ube2al coding upstream 269025 24125893 ~ 24137925 (+)
LOC110502017 LOC106582137 coding upstream 288704 24084901 ~ 24118246 (+)
LOC110502003 LOC106582138 coding upstream 384413 23956163 ~ 24023376 (+)
LOC110501609 fam155a coding downstream 425447 24848514 ~ 25013655 (+)
LOC110501611 pdzd1 coding downstream 732030 25155097 ~ 25162839 (+)
LOC110501614 ox2g coding downstream 770368 25193435 ~ 25223476 (+)
cfap91 maats1 coding downstream 902164 25325231 ~ 25333857 (+)
LOC118943581 NA coding downstream 978412 25401479 ~ 25407741 (+)
G1791505 NA non-coding upstream 20140 24386582 ~ 24386810 (+)
G1791503 NA non-coding upstream 20729 24385899 ~ 24386221 (+)
G1791501 NA non-coding upstream 22390 24384299 ~ 24384560 (+)
G1791493 NA non-coding upstream 25427 24381186 ~ 24381523 (+)
G1791472 NA non-coding upstream 38511 24368236 ~ 24368439 (+)
G1791530 NA non-coding downstream 9966 24433033 ~ 24433266 (+)
G1791545 NA non-coding downstream 96546 24519613 ~ 24555699 (+)
G1791594 NA non-coding downstream 136447 24559514 ~ 24559716 (+)
G1791603 NA non-coding downstream 143835 24566902 ~ 24567138 (+)
G1791694 NA non-coding downstream 287894 24710961 ~ 24777461 (+)
G1790805 NA other upstream 287475 24118562 ~ 24119475 (+)
G1790442 LOC106582152 other upstream 974567 23416093 ~ 23432383 (+)
G1788815 LOC100136012 other upstream 2407327 21998473 ~ 21999623 (+)
G1788811 LOC106581691 other upstream 2410857 21995364 ~ 21996093 (+)
G1787719 NA other upstream 3270473 21134265 ~ 21136477 (+)
G1792040 NA other downstream 419875 24842942 ~ 24843285 (+)
G1792649 NA other downstream 871479 25294546 ~ 25296557 (+)
G1793045 NA other downstream 1308259 25731326 ~ 25731754 (+)
G1793717 NA other downstream 1892759 26315826 ~ 26316243 (+)

Expression


Co-expression Network