LOC110501611 (pdzd1)


Basic Information

Item Value
gene id LOC110501611
gene name pdzd1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25155097 ~ 25162839 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579295.2
CCTTTGGACTGTCAAAgtccttcagagagagagagagagggggaaagagggagagagagaagactcagATAGAGATAACACCTGAGCATTAGGTGAGCTCCTCCTTCGGACTGGgagtagagacaggaggagGACATGGCTGGGTACAAGCCCAGGGTGATAGTTCTGAGTAAGAAGCCAGGTCATAGCTTTGGCTTCTTCCTGAGGGTGGAGAAAGGCGAGGATGGTCACCTGATCAGGAACCTTGAGATGGGCGGGCCGTCCGAGCTGGCGGGTTTGAAGGATGGAGACCGCATTCTCCGGGTCAACGGAACCTACGTGGATGAAATGGACCACTCACggGTGGTGGACCTGGTGAAGGAGAGTGGTGCATCCGTCACCTTCCATGTTCTGGATGTGGCATCCTACAAGCAGGCCAAGACTGAGGGGGTGGATCTTTCTGACCCTCACCCCAAACCCACCCAGCCCACCATGAACGGAGTGGCAGGAGAGGCACCCAAACCTAAACTCTGCTACCTAGCCAAGTCTAGCGGGGGTTACGGCTTCTCTTTGCGCTCTGTCAAAGGTGAGGTGGGCATGTTCATGGCAGAGGTGAACCCAGGGGGTGCGGCCGAGAGGGCAGGGGTCAAGGCCAACGACCGTCTGATAGAGGTCAACGGGGAGAATATGGAGAACGCCACTCATGACCAGATAGTAGAGAAGGTCAAGGCATCAGGCAGCAGAATCATGTTTCTATTGGTGGACGAGGGCACAGACAAGTTCTACAAGAACAAACGCATCAAGCTTGGTGCGGGGCTAGCCACAGTGAAGTTCCTCCCACTGAAGCCACGCATTGTAGACTTGTTCAAAGGATCAGACGGCTATGGATACTTCCTAAAGGCTGAGCCTAacaagacagGCCATTTCATCAAGGACATTGACAGGGGCAGCCCAGCTGATAGGGCGGGACTAAAGGAGATGGACAGGCTGGTTGCCGTGGAGGGAGAGGAAGTGGACAGCTGCAGCCATGAGCAGGTGGTGGACAGGATCAGGCAATGTGGCAACAAGTGCTGCCTCCTGGTGGTCGATGAAGACACGGACATGCTCTACAAGATGGGAGGCGTGTCTCCTCTTTTCTACTTGGAAGAGATGGGATTCCTCCTTCCAGCGAGCCCTCCACCCAGCTACCCAGAGTGCATCCCGGCCCTTGCCCCAGCCACCACAGCGCTCCTCAAGCTGTGTAAGATGGAGAAGACCTCCGCTGGGTACGGCTTCCACCTCAACAGTATCCAGGGGGTCTGTGGCCTGTACATCAATGAGGTGGTGAAGGGCGGAGCTGCAGACAGGGTGGGTATGGAGGACGATGACATTGTGGTGGAGGTGGACGGTGTAAACGTGGAGCAGAGCAGTCACCAGCAAGTGGTGGGGTTGATCCGTAACAGCGGCAGCTCACtggtgctcctagtggctgggaAGCAGGCCTACAACCACTTCAAAGCCAAAGGGGTGGCCATCACACCCCAGCTCCTCACCCCCGCACCCACAGCCAGGTCCCcatccccacccccctcccccacagccaggtccccatccccacccccctccccagcCCAAAGACACACACCAGCCCAGATAGACACGCCAGCCACTCTGGAGGAAGTccgagaggaggtggaggaggaggaggaggaagccaTACATAAGCCATACATCCCACTGCCCCAGAcacgagagagaACTCCATCTGTGTCTTCAGCAGCATCATCTTGCTCGAGTGTTGATGAGAGACTCTGAGAAGTCACCAATTAGAAACAACTTCCTGACTTTTTCTGTCTCCCGTCAACCTTTGTACCATGCAGGATAATGTGGATATCTTGGCATAAAAACTCTGATCAAACTAAA
>XM_021579296.2
TTTACAGCACATTGCGTTATTGAGGACATGGCTGGGTACAAGCCCAGGGTGATAGTTCTGAGTAAGAAGCCAGGTCATAGCTTTGGCTTCTTCCTGAGGGTGGAGAAAGGCGAGGATGGTCACCTGATCAGGAACCTTGAGATGGGCGGGCCGTCCGAGCTGGCGGGTTTGAAGGATGGAGACCGCATTCTCCGGGTCAACGGAACCTACGTGGATGAAATGGACCACTCACggGTGGTGGACCTGGTGAAGGAGAGTGGTGCATCCGTCACCTTCCATGTTCTGGATGTGGCATCCTACAAGCAGGCCAAGACTGAGGGGGTGGATCTTTCTGACCCTCACCCCAAACCCACCCAGCCCACCATGAACGGAGTGGCAGGAGAGGCACCCAAACCTAAACTCTGCTACCTAGCCAAGTCTAGCGGGGGTTACGGCTTCTCTTTGCGCTCTGTCAAAGGTGAGGTGGGCATGTTCATGGCAGAGGTGAACCCAGGGGGTGCGGCCGAGAGGGCAGGGGTCAAGGCCAACGACCGTCTGATAGAGGTCAACGGGGAGAATATGGAGAACGCCACTCATGACCAGATAGTAGAGAAGGTCAAGGCATCAGGCAGCAGAATCATGTTTCTATTGGTGGACGAGGGCACAGACAAGTTCTACAAGAACAAACGCATCAAGCTTGGTGCGGGGCTAGCCACAGTGAAGTTCCTCCCACTGAAGCCACGCATTGTAGACTTGTTCAAAGGATCAGACGGCTATGGATACTTCCTAAAGGCTGAGCCTAacaagacagGCCATTTCATCAAGGACATTGACAGGGGCAGCCCAGCTGATAGGGCGGGACTAAAGGAGATGGACAGGCTGGTTGCCGTGGAGGGAGAGGAAGTGGACAGCTGCAGCCATGAGCAGGTGGTGGACAGGATCAGGCAATGTGGCAACAAGTGCTGCCTCCTGGTGGTCGATGAAGACACGGACATGCTCTACAAGATGGGAGGCGTGTCTCCTCTTTTCTACTTGGAAGAGATGGGATTCCTCCTTCCAGCGAGCCCTCCACCCAGCTACCCAGAGTGCATCCCGGCCCTTGCCCCAGCCACCACAGCGCTCCTCAAGCTGTGTAAGATGGAGAAGACCTCCGCTGGGTACGGCTTCCACCTCAACAGTATCCAGGGGGTCTGTGGCCTGTACATCAATGAGGTGGTGAAGGGCGGAGCTGCAGACAGGGTGGGTATGGAGGACGATGACATTGTGGTGGAGGTGGACGGTGTAAACGTGGAGCAGAGCAGTCACCAGCAAGTGGTGGGGTTGATCCGTAACAGCGGCAGCTCACtggtgctcctagtggctgggaAGCAGGCCTACAACCACTTCAAAGCCAAAGGGGTGGCCATCACACCCCAGCTCCTCACCCCCGCACCCACAGCCAGGTCCCcatccccacccccctcccccacagccaggtccccatccccacccccctccccagcCCAAAGACACACACCAGCCCAGATAGACACGCCAGCCACTCTGGAGGAAGTccgagaggaggtggaggaggaggaggaggaagccaTACATAAGCCATACATCCCACTGCCCCAGAcacgagagagaACTCCATCTGTGTCTTCAGCAGCATCATCTTGCTCGAGTGTTGATGAGAGACTCTGAGAAGTCACCAATTAGAAACAACTTCCTGACTTTTTCTGTCTCCCGTCAACCTTTGTACCATGCAGGATAATGTGGATATCTTGGCATAAAAACTCTGATCAAACTAAA

Function

symbol description
pdzd1 DZ domain-containing protein 1

NR:

description
Na(+)/H(+) exchange regulatory cofactor NHE-RF3-like

GO: NA

KEGG:

id description
K24057 PDZK1, PDZD1; DZ domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579295.2 False 1881 mRNA 0.56 9 25155097 25162839
XM_021579296.2 True 1773 mRNA 0.56 9 25156374 25162839

Neighbor

gene id symbol gene type direction distance location
LOC110501609 fam155a coding upstream 146704 24848514 ~ 25013655 (+)
LOC110501605 LOC106582130 coding upstream 732030 24394068 ~ 24423067 (+)
LOC110501999 LOC106586666 coding upstream 830340 24264331 ~ 24324757 (+)
rab20 LOC106582135 coding upstream 997713 24148044 ~ 24157384 (+)
LOC110502026 ube2al coding upstream 1017172 24125893 ~ 24137925 (+)
LOC110501614 ox2g coding downstream 30596 25193435 ~ 25223476 (+)
cfap91 maats1 coding downstream 162392 25325231 ~ 25333857 (+)
LOC118943581 NA coding downstream 238640 25401479 ~ 25407741 (+)
LOC110502118 LOC106582051 coding downstream 401829 25564668 ~ 25587687 (+)
LOC110501624 LOC106582115 coding downstream 456339 25619178 ~ 25651263 (+)
G1792265 NA non-coding upstream 4902 25149694 ~ 25150195 (+)
G1792260 NA non-coding upstream 11649 25143247 ~ 25143448 (+)
G1792252 NA non-coding upstream 21769 25133020 ~ 25133328 (+)
G1792240 LOC106582126 non-coding upstream 41199 25113664 ~ 25113898 (+)
G1792236 NA non-coding upstream 45275 25109555 ~ 25109822 (+)
G1792271 NA non-coding downstream 3611 25166450 ~ 25167906 (+)
G1792280 NA non-coding downstream 12026 25174865 ~ 25175168 (+)
G1792284 NA non-coding downstream 17930 25180769 ~ 25180969 (+)
G1792289 NA non-coding downstream 22739 25185578 ~ 25185861 (+)
G1792290 NA non-coding downstream 24165 25187004 ~ 25187208 (+)
G1792040 NA other upstream 311812 24842942 ~ 24843285 (+)
G1790805 NA other upstream 1035622 24118562 ~ 24119475 (+)
G1790442 LOC106582152 other upstream 1722714 23416093 ~ 23432383 (+)
G1792649 NA other downstream 131707 25294546 ~ 25296557 (+)
G1793045 NA other downstream 568487 25731326 ~ 25731754 (+)
G1793717 NA other downstream 1152987 26315826 ~ 26316243 (+)
G1795411 NA other downstream 2740743 27898367 ~ 27912875 (+)
LOC110501693 LOC106582057 other downstream 2874089 28036917 ~ 28052019 (+)

Expression


Co-expression Network