LOC110501999 (LOC106586666)


Basic Information

Item Value
gene id LOC110501999
gene name LOC106586666
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 24264331 ~ 24324757 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579873.2
GTCGTTAATAGGGGGTGGGGTGGACGAGAAACAAGAGCAAGTTGCATTGCTCAGAAGCTCACAACGTCTTGGGCAAAGATGCAGCCCAACGCACTGCACATGATCTGCTGGTGATCTACATTCCCCCTGAAGAACAATAACGTTTCAACAAGTGGTCTTTAGTGAGCATTCGGCACAGTTGTACATACGTTTCCATTGCACCCCATCTCAATGATGGTCCATAGTGGTACGCTGGTTCTGTTGGTGGCTGTATCCTACACGATATTTCGGACAGAGGCTAAGgggtGTTCTGGGTCATCGTGCGGAGGAAAATGTGACTGCAGTGGAGTAAAAGGAGAAAAGGGTGAGCGGGGGTTTCCTGGTCTCCAAGGCAACATGGGGTTCCCGGGCATGCAGGGCAACGAGGGGCCCGCCGGGCCGATGGGCCCTAAGGGAGAATATGGCGAGTCTGGAACTCCTGGAATGAAAGGAACACGTGGATCTAATGGTTTGTCAGGCTTCCCAGGAAATCCAGGGCTACCGGGTATCCCCGGACAAGACGGCCCCCCTGGATCGTCAGGTATCCCAGGGTGCAACGGAACAAAGGGAGATCGAGGGACAGATGGACAGCCTGGGTTCCCTGGTCTACAGGGTCCTCCTggtatcCCTGGGCTAATGGGAATGAAAggagACCCAGGTGGTGTTTTAGGAATCATCCCACTGAAAGGAGATAAAGGATTCCCTGGAACACCTGGTTTACCGGGACCTAATGGCCCCTCAGGACCCGAAGGCCCCCCAGGAAACCAGGGATCAGACGGACCCAGAGGTTTCCCTGGCATACCTGGCCCCCCAGGAGAAAAGGGTGACCGGCTGTCATTCCAGAGTGAGAAGGGAGACAAGGGTGCACAAGGGCTCCGTGGTCCCCCTGGCCCCCCTGGACTCCCGTCACAGGAAGCGGGAGGAAATACCGTTACTCATTTCCTCCCTGGACCACCGGGACAGAGAGgcgagacaggagacagaggagacaaaGGTTCTTGCATTCCCCATCTAAACGGGGTCAAGGGTGAACAAGGCCCACCAGGACCAAGGGGAAAACCTGGCAAAGATGGCGACAATGGATTTAAGggagagagaggctttcCTGGCGGCCCTGGATACCATGGAACACCGGgtgaaaagggagagaaaggacCTCCAGCATATGTTGATAGTGCTCCTGGCTCTCCCGGCCCCCCTGGTCTCCCGGGCTTACAAGGAGAAAGAGGTTTCCCTGGTCTTCAAGGAGACCTTGGTCCACCAGGCAGTCTTATTGAAGGACCTCCCGGAGAGAAGGGCCAACCAGGAGAGATTGGTCAGAAGGGAGACAGGGGTGCAGATGGGGACTCTCTCACAGGAAAGCCTGGACAAGATGGATCCGTCGGACCCCCTGGTCCTCCTGGACCTCCTGGTGATGAGCCATGTGATCCAGCCCTTGAGAAGGGACCACCCGGACCCCCCGGCCCACCAGGACTACAGGGGGAGTTGGGACAGAAAGgtgatCAGGGAGACACGTGTGTGCAGTGTGAAGCCTTCGGGCCCCCTGGACTCCCTGGTCCACAGGGGCCTAAAGGACTGCAAGGATATCCTGGAGCAGCAGGCACTAAAGGAGACACGGGCCTGCCTGGACCTACTGGGCCTGATGGAAGCCCCggtAATTACGGTACTCCTGGGTTGATCGGGGCTCCAGGAGCCCATGGTGAGCCTGGCGATATCTACGTGGCTCCAGGGCTGAAGGGTGACAAAGGAGGGTCTGGCTTCGTGGGCACACGAGGACTGCCAGGTGTGGATGGACTGCCAGGGAAAGCTGGACTACCAGGCGTGCCCGGACCCAAAGGAGAACCTGCCCAAGATGGCATCAAGGGGGACCGTGGTCCAGATGGGGAACCTGGGATCACTGGACCCCCAGGAGAGAGGGGTCCTCCTGGTGTAccagggtttggccggcagggggAGCCTGGAGAGAAGGGTACATCTGGCCAAGGAGGCCGACCTGGAATCCCTGGACAACCAGGAGTGAAAGGTGAACCAGGAAAAGGTGTGAGTTCACCTGGACCCCAGGGCACCCCTGGACCTCGAGGAGAATCTGGCATACGTGGACTACAAGGTGACCGAGGACCTCATGGAGACCCAGGAATTCCAGGATTCCCAGGACAGAAAGGTGACACAGGTGCACCTGGCATTGGATTCTCAGGACCACCTGGACCTAAAGGATATTCTGGAGCTCCAGGAGCCACTGGGTTGCCAGGAGAGCCTGGAAAACCTGGACAGGATGGTTTCTCTGGAATATCAGGCACACCTGGTCCAAAGGGTGAGCCAGGTAGGGGTCTACCTGGACCTAAAGGTGCTCAGGGTCCTGCCGGAGTGACAGGTTTCCCTGGAGAGAAAGGCAACCTTGGTCTACCTGGAATTCCCGGACAAGAGGGACACACAGGACCACCTGGAGCTCAGGGCATCAAAGGTGACCACGGACCCCCTGGTCAGCATGGTGGCACTGGACCCCCTGGACCCCCTGGAGCAGGAGAACCTGGTGCCCCTGGACCCATGGGACCCCCTGGAGAGTCTGGCCTCTTCGGTCATGATGGTGTGAAGGGTGATAAGGGTTTGCCTGGCTCTCCTGGTCTGGACATGCCCGGCCctcagggagagaagggagactcAGGATTACCTGGACTTTCTGGTTCTAAGGGGTTTCCAGGACGACCAGGCCCCGCCGGCAGAGATGGATTCCCTGGGGGGGCAGGCCCCAAGGGAGAGATGGGAGTCATGGGAACACCTGGAACACCAGGATATCAGGGTCCTTCTGGGAACCCTGGAAGTCCAGGACTGAGAGGTGACCCTGGTATCTCTGGGCCAAGAGGGGAGTTCGGTGAGAATGGAcccaaaggagagaggggagagccaGGTCTCCAGGGCCCTGCTGGCAACATGACTGACGTTGACATGGAGCACATGAAGGGCGAGAAAGGAGACCTCGGGGATCCAGGTGACCCTGGATACACGGGAGAGAAGGGTTATCCAGGACAGCCTGGAGTACCTGGTATGCCAGGAAAGGATGGAGAGCCCGGTACACCTGGTCAGCCAGGTGATAAAGGGGAGACAGGTTTTCCCGGAGAGCCCGGCAGTATAGGATATCCTGGAAATAAAGGAGGCATTGGCGAAATGGGATATCCAGGTTCTGTAGGTACGAAGGGTGATAAAGGCATTGTGGGCACACCGGGTCATCCAGGGTTCAGGGGTACAGAGGGGGTGAAGGGAGACAAGGGACAAACCGGTCTGCCAGGTGTTGGAGTACCAGGACCCTCTGGAGAGAAGggtCAGTTGGGTCTGCCTGGGTTCCCTGGTAACGCAGGAGAGAAGGGTCAGAAGGGAGGAATGGGAGTGCCCGGGATGCCAGGAACACCAGGAACCAAAGGAGACACTGGACACATTGGTTACCAAGGTCAGCCGGGTCAGCCAGGAGAGAAAGGTATTGGTGGGCTTCCCGGGTCACCAGGAGAGCCAGGTCAAACAGGTCGACCAGGTGAGCCTGGTCTGCAGGGTCCACCAGGTACAACCGGAGAGAAAGGAGCGTCAGGAGTGGACGGCATACCTGGATcatcaggagagagaggagacacagGTTTACCCGGCAGGGGCTTCTCAGGGACACCAGGGTCGTCTGGGGATAAAGGTGACAAAGGCTCTCCAGGTTTCCCAGGCTCTCCAGGTATCCCGGGTATCCCAGGGACCAGGGGAGACAAGGGTATTCCAGGCTTTGAGGGTTCCCATGGCCAGCCAGGAGAACGGGGTCTCCCAGGACCCGCCATGGCGGGGCCCAAAGGAGACCAAGGAGTGTCAGGAAAGCCTGGAGAACCAGGTACCAGTGGTGCTCCAGGTCCTGCTGGTGTTCCAGGCAGCGTGGGGGGGAAGGGAGACAAAGGGGACCAGGGTGAACCAGGAGTACATGGGGAGCAGGGTATCAAAGGAGATCAAGGATACCCTGGACTTTCTGGTCAAGCTGGCCTTCCAGGTGTTGATGGActgaagggagagatgggactGCAGGGAGTGCCTGGTTTCCCAGGGACAAAGGGTGAATTCGGAGTGGTTGGATTCAAAggagagctgggggacagagGATTCCCAGGAGACAAAGGTAATGATGGTCCCCCTGGTCCTCCTGGCCCCCACATCTTCATCAAGGGAGACAGCGGCTTCCCTGGTAATCAGGGCCCTCAGGGGCCTGTGGGGCCCTCTGGTATCCCTGGGCTGAAAGGACAGCAAGgTGTGACAGGTATTCAGGGTATTAAAGGTGATGAGGGGAACCCAGGGTTTAATGGTCTCCCCGGCGCCAAGGGAGAACCAGGCTTGCTTGGTCCCTCAGGACCCAGAGGGTACCCTGGACCCCCAGGACCTGATGGTGTTCCGGGTCAGGTGGGTCCTCCTGGCCCCTCCTCCATGGAACATGGTTTCCTGGTAACCAGGCACAGCCAATCGGTGGAGGTTCCACATTGTCCTGAGGGAACGTCGGTGATCTATGATGGATATTCCCTACTCTACGTCCAGGGCAACGAGCGCTCCCACGGCCAGGACCTGGGTACGGCTGGTAGCTGTCTAAGGAAGTTCAGTCCCATGCCCTTCCTCTTCTGTAACATCAACAACGTCTGTAACTTTGCCTCCCGTAACGACTACTCCTATTGGCTCACCTCCCCTGAGCCCATGCCAATGAACATGGCCCCTATCACTGGCCAGAGCATCAAGCCCTTCATTAGCAGGTGTTCAGTATGTGAGGCTCCTGCCATGGTGATAGCAGTGCACAGTCAGAACATCATGATCCCATCATGCCCCAATGGCTGGGACTCACTCTGGATTGGCTACTCCTTCGTCATGcaCACTAGTGCAGGTGCTGAGGGCTCTGGACAGGCACTGGCATCTCCTGGCTCCTGTCTAGAGGAGTTCCGTGGCGCTCCGTTCATCGAGTGTCACGGCCGTGGAACCTGCAACTACTACGCCAACTCCTACAGCTTCTGGCTGGCCACCATCGAGGACGAGGAGATGTTTACGAAACCTGTGCCCACCACACAAAAGGCAGGAAATCTCCGGAGTAACATTAGCCGTTGCCAGGTGTGCATGAAGAGGACATAGGCTCTACCCCCTGACCTCTCTGTGACCCTTAACCACCCACCACAACCCCTGACCCCACCCAGTCCGACGGTCCGGGGCATGACTTCGTGTTATTGACCAAAGGATGGTGCTATTTCACTGCGTGTGTGAGAGGAACAGGCAGACACACTGTGAAAcagaacaacaaaaaaacacccaGAAAGATTGATGAAAGAacaaaacacactgtcagaggaggctggtgggagtagctataggaggacaggctcattggaatggaataatggaatggaGTAAAATATGTGTTTCAtatatgtttgataccgttccattttaACCATTGCAATGAGTCACTCCTCGTATAGCTCCTCCTACCAGCCTTCTCTGACACACCAGAGACCAAACCATAAGATCAACTGGCCCTACGCTCCATCATGCAGAACACTTTACTAACATTTTCACAACGTTTCTCTAGCGAATGTCGCCCAGTTTACGACTGCACTGAGTACATCCCGCCCCCCTCCCCATTAGTAAACTGGCGTCCATTTTGAAAGGGGGTGTTTGTGTAAGTCAGGTGCTATTGAATCTAATCTACTTGCCTTATTCCAGTACATTATGTTTTGTATTTTCACTCAATGCCACTGACTTTCAGCTCTGAGTTAGTTATATATATTGTTATTGTTCCTCACTTTTACTTTTGTAATAACACAATACTAATGTAAGGATGGGAGTTACCACTGGTTACAGATGCTTGTCATGCTGAGACATCACTGTAAGtgaagggctctattcaatctgtcaCGGAAGTTCATCGTTACAGCATGATTGAAAATTCAAAGCCAGTGTTCCCACATTAGCAGATACTGCATTCACAGTAAGCGCTGCATacgtcggctcaatcggaaatgacctttacatttatATCAtgcaatctgtaacgcttcagcgacgcagattgaatagagccctagtGGTTGCTAGCATGCATGCATCGCGATGGTTCTGTTGTAAATATATGACTTTTCTTTTTCCTTCCTAAAATAACAGCCACCATAATCTCTTCAGGTATTTACGTTTTAATTTGTGTTATttcaatttgtatttatttgagtAAATGTAAAGCTTGAGTGGATTTGAGTCGCCAAAGAACCATAATCAATGTCACTAAAGAAAGTACAGTATGGTATTCTGTTCCAACCTGACCTAGGCACTTATAGTTTTAATACTGGGTTTAATGTTACATGCTACAGTTAGCATACATCAGACCTGCCGCTATAGGCCAACACCTTCAGTGCCTTATCTGTCAGTATGCAGAACAGtaacatagtggtggcagcatcactgatagtgtgttatttcattggagcgcatcacacacatcacataaggctgctgaggggaggacctCTCATAATAATTCAtgttaatggaatggtatcaaacacatggaaaacatCTGTtcaataccattccattgattacgttccagccattactacgaGCCTGTCCTCTTCAATGAAGGTGCCGCCCACATCACACACACTCGCGCATCCACACCCTGTCAGTACGAGGGGGAACATTGACACAGCTTGTCATCTGTAGTatgcagagggtgtgtgtgttgtcacaAGCCGAAAGAGTTTTCACACACGGACCTGTTGACAGAAGAAGTTCATGGCTTGTAGTTTGTGTGCAGAGCAATCCTTAAGACAGCGAGTCGTCAAACACTCGTCAGTTCACTTGGCCACTCAATCAACTCTGTGTGCATCAATAGTTCTGTGTGATGTACGTTTCCTGAATACGTCCTTCACATTATTTTGTGTGTTGAAGCTTATTAATCAAATGCTAGAACCCAAAGAAAGACATGTATACACACGCACACCTATGTGTACTCTTATTCTTACTCTGATATACTTGATCATGCCTCCTGCAATATTATTCCTGTGATAATTAGCTAGATATATTTAGATTTTCCATTTTGGTCAAAGACAGAGAAGGATATATTTATGACTAAGTGCTTTTACAGATTCCTGGGTATTTTGAATCTACTTTTCAAGCTCCCTTTTAAAATGTAAATTCCCTACTGCTCTGTTTGGCACTTGTCCCTAATCTACTACATCAATCCTACCCTGCTGCTCCCCCTTTTGTCTGAGGGTGAACGCAAAAACCCTAGAACCAAGACTCTCCTGTCCAAGCCCAGAATTAGTCGAGTACTAAAGAAATACTTTACACACTGAAGAAATAAAGTATCCAAACCTCACAAACTACTTGTAACCGGCAATCATTCATAGGTTTCCTCCAATCAAAGCATTCTGAAAGTAAAAGGCTCTTATCATTAGTAGACTGaactcaaaatgttttttttttaatgattctTCAGAAAATGCTCATTCATACATACAATTTTAGTAGCACTTGTTTAGGAATACGTTTGAGTTCAGTGGCAAATTTTGCTTGAGAGTTCTTGGTTGTAGTCCCTAGCTCATTATTAACCAACCGACCAAACGTTTTGCCAACTATTCTTCTCACCTCCCAGTCCCCATACTGTGTAAATCATACAATAAAATTATTTGTATAAAA

Function

NR:

description
collagen alpha-1(IV) chain-like

GO: NA

KEGG:

id description
K06237 COL4A; collagen type IV alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579873.2 True 7704 mRNA 0.52 48 24264331 24324757

Neighbor

gene id symbol gene type direction distance location
rab20 LOC106582135 coding upstream 106947 24148044 ~ 24157384 (+)
LOC110502026 ube2al coding upstream 126406 24125893 ~ 24137925 (+)
LOC110502017 LOC106582137 coding upstream 146085 24084901 ~ 24118246 (+)
LOC110502003 LOC106582138 coding upstream 241794 23956163 ~ 24023376 (+)
LOC110502009 LOC106582142 coding upstream 362348 23881233 ~ 23901983 (+)
LOC110501605 LOC106582130 coding downstream 82193 24394068 ~ 24423067 (+)
LOC110501609 fam155a coding downstream 523757 24848514 ~ 25013655 (+)
LOC110501611 pdzd1 coding downstream 830340 25155097 ~ 25162839 (+)
LOC110501614 ox2g coding downstream 868678 25193435 ~ 25223476 (+)
cfap91 maats1 coding downstream 1000474 25325231 ~ 25333857 (+)
G1790801 NA non-coding upstream 123134 24140772 ~ 24141197 (+)
G1790825 NA non-coding upstream 141133 24122814 ~ 24123198 (+)
G1790814 NA non-coding upstream 186563 24077538 ~ 24077768 (+)
G1790785 NA non-coding upstream 213168 24050880 ~ 24051163 (+)
G1790803 NA non-coding downstream 136 24324893 ~ 24325151 (+)
G1791414 NA non-coding downstream 9118 24333875 ~ 24334595 (+)
G1791424 NA non-coding downstream 14442 24339199 ~ 24339878 (+)
G1791450 NA non-coding downstream 32830 24357587 ~ 24357951 (+)
G1791460 NA non-coding downstream 37164 24361921 ~ 24362147 (+)
G1790805 NA other upstream 144856 24118562 ~ 24119475 (+)
G1790442 LOC106582152 other upstream 831948 23416093 ~ 23432383 (+)
G1788815 LOC100136012 other upstream 2264708 21998473 ~ 21999623 (+)
G1788811 LOC106581691 other upstream 2268238 21995364 ~ 21996093 (+)
G1787719 NA other upstream 3127854 21134265 ~ 21136477 (+)
G1792040 NA other downstream 518185 24842942 ~ 24843285 (+)
G1792649 NA other downstream 969789 25294546 ~ 25296557 (+)
G1793045 NA other downstream 1406569 25731326 ~ 25731754 (+)

Expression


Co-expression Network