XLOC_037177


Basic Information

Item Value
gene id XLOC_037177
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 27411331 ~ 27416612 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075128
gaacgtacggtaacccACAGAAACACTCGTGTGAAAAATCTCTGTGAACGTGAATATGATTGGACGTTCGAACCTTGTGTACTATGATGCCACAATTTACTGGAGGGTGATTGGCTGTGTAATAGGAAGAGGAAAGACGCTTGCAAATGTTGCTTGGAGTCGGCGCTGTGTGTATTTGGTTGAGCGTAACGGATCTGTCAGTCACAATGTGCATATTATCAGCTACAAACATGACAAAAGGTGTTGTTACTAAAGTGAAGCTGTGGCGACCGCTGTCTTTCATTGAAGAGAACCCAGCAACAATGACGGTATCAGAGGACCAGGTGTTGGGGTGGAGGGAACTACAGACCTACAGAACTTCAGTCAGAATATCAGACACGGTACCATCTTTAAACAGGTACGACATTCACAGAGGAATATCCAAATCACATAATTTAGTTTGATGACCATGTCGCTCTCCTCCAGGTTGAACTGTACATTTTCATATAAAAACTGAgaacatacaaacaaaacaccctgtcTGTGAGAGTCAGTTATTACTTATTTTGACACTGAAGAGGAATCATTGGAGAGTCGGTTGAACAAATTTAATGGCAAACATGAACTTAAACCCACTGGTTTCTTCAGCAGAGACCATCTTTACATGGTTTTGGCATCTTGAGTGTCTTGTTGAGTCCACATCTTCACATATGCAGTCTTCTTTCCTTTATCATGAGCTATTATTTCAACATAAatgcataagaaaaaaaataatattgcgtaAGAGCCCAAGTTTGACTAACGGTTGATGTGTTTCTCGTGAGCCTTGAGTTTGTATTTCAATGCACAACATTTACGTTACTGAGTAGCAGCTTGTATATACAAAGCCAAATGGGCAGAGGCATGGACTACAGAAGATATGCTGAGATTGTTACAGTAAAGCACTAGAAGGTCAGAGGTCATCAGAGGACAAATCATAGAAACACAACATAAGTCTCAAATACGATTCTGGAAGATTCAGCTTACACTTAACACTAATTCATGCGCGAACCGCAGTGCGGCTCACTCACGTTGATCTTTCCAGACACATattcaaaaagaacaaaaacataaatattcatCAGTAGTGCCCACTGATTGGTCTAAACACCATTTCCACTGTCAATTGACAACCAGAAGACACAAGCGAACAATCGTCAGACACTAAAGGTAGAAAACAACATTTTGAATCGTAATATTGAGtggaaaaaaaaaggaacaaacaaaAATCATCCATTATTCAGGAATGTGAAGGATATCTCTCCACAATGCATTCAGACTTTGGCAGAGAAATCAGAGGTCGTTCACTCCTTGTCCTCAATGAAGTACAAAACGACGCACAATCTTTGTTACACGTGCCCAAAGGCAACTGAAGAGACTAGAAACAAACTAACAGGCCAGCTGAAATTGAGCTTTGATAGTAAAACAAACATCATGACGAATTAGAAAACAAACCGAACGGTATTTGTACTTTCACAGACACGCATGAAGAGCCAACCTTTTGGTTTGAACTTGGCTGGCTTGTCTTATCTACACAGATAAAGAGCCCAGAATATCAACCACAGACGAGTTAATTCATCGCTAGTTTACAGTTAAAGATACTTCACCCATCTAGAATATGGCACGTTAAGTATTACGTAGGAGAAACACGCTCGAAAAGGACCTCACAGACATACACTCGTCACGTGGCGCCAAATACATTGTACTACTCACACTTCTAAAACCATGTCACGTCATACGTCTCTAGGAGCGGGTGAAGTACCTTTCGGAGACGGATTAAAAAGTTGGTTGTGGTGCTTTTTTCGAGCTAGCAGCAAAGAAAACGgaaaaagtgtgtgtttgtgactgaGCGTCGTGGGTTTGGCCAACTGAATTGCCATCGGCCTGATTTGCATTCCAGAGTGGATAAATTGGTGTCAAATGTAACAAGACATGAGTGGTAAATATTCTGAAAATATACATCGCTGAAAGAAACAGTATggcgtcattaaaaaaaaaaagaaaacattttggcCTTATAGCAATGCAggtatacattttttgtttatatatatatttgtttgctattttaaaaaatataaagttttttgTCATAGTTTCTATTATTGGCTTAggttattaaataaaagtttgttaatcttttatttaccTTTTGTTTTAAAGTAACATGCTGCTTTTTAATATGGCAGTTTTACGTTTTTATAGGTCATCCATTTTGTTTCATGCACTCTTGTTGATTTCGTAACTTTCCCATTATCTACACGGCGAGAGTCAGTTTACTTGTTGTGAGGAGACCCTGGTCAACCCCTGTACATAAATGAAGATGTCGTCGGATTTACATTGTGGGTATAGAATTCCTCTTACTCTCAAATACTAATGGTACATCTCCCAATATCGTGATCTGGCCTTTGCCTTTTTAACCTCTTTAAGTCAGTCCTGTACACAGACAGAAGAGAATCTGAACAGCCCTTAAGTCCCTCTTGGTCCATCAGTCTTGCTCGCTCTGTCTCTTCTCTTTTAAAGAGTGAAAGTCCAAGTACCAGAGTTGCGCCCTCTTGTGGCACGACAGTGAAACACGCCTCCAAGAGGACCCTCTAAAACTGATACCACTTCTTGTCTTTGCATTTAAGCATTAG
>TCONS_00073182
GTATTTGGTTGAGCGTAACGGATCTGTCAGTCACAATGTGCATATTATCAGCTACAAACATGACAAAAGGTGTTGTTACTAAAGTGAAGCTGTGGCGACCGCTGTCTTTCATTGAAGAGAACCCAGCAACAATGACGGTATCAGAGGACCAGGTGTTGGGGTGGAGGGAACTACAGACCTACAGAACTTCAGTCAGAATATCAGACACGGTACCATCTTTAAACAGGGCGATGCGAGCTCGAGCCAAATCCCCAACCACTCCGCCTGCTGCCGCCTTCATGCCCTCTATACCACCTTGTCCTGGGATGTGCTGTGCCAGGCTGCGTGATGCCTTACCCGCCGATGCCTCGCCAACTATTTAACAAGAGAAAGCCAAATGCATCAGAATCGGAAAGAAAGGTAATTTGATTGACTTTGAAGgtgccatgg
>TCONS_00075129
GAAGAGAACCCAGCAACAATGACGAATATCGATAAGAACGAAAGGTGGCATAATCCATTTAAACAAGACCGACGTTTGCTGCCTTCTCTGAAGGTATCAGAGGACCAGGTGTTGGGGTGGAGGGAACTACAGACCTACAGAACTTCAGTCAGAATATCAGACACGGTACCATCTTTAAACAGGTACGACATTCACAGAGGAATATCCAAATCACATAATTTAGTTTGATGACCATGTCGCTCTCCTCCAGGTTGAACTGTACATTTTCATATAAAAACTGAgaacatacaaacaaaacaccctgtcTGTGAGAGTCAGTTATTACTTATTTTGACACTGAAGAGGAATCATTGGAGAGTCGGTTGAACAAATTTAATGGCAAACATGAACTTAAACCCACTGGTTTCTTCAGCAGAGACCATCTTTACATGGTTTTGGCATCTTGAGTGTCTTGTTGAGTCCACATCTTCACATATGCAGTCTTCTTTCCTTTATCATGAGCTATTATTTCAACATAAatgcataagaaaaaaaataatattgcgtaAGAGCCCAAGTTTGACTAACGGTTGATGTGTTTCTCGTGAGCCTTGAGTTTGTATTTCAATGCACAACATTTACGTTACTGAGTAGCAGCTTGTATATACAAAGCCAAATGGGCAGAGGCATGGACTACAGAAGATATGCTGAGATTGTTACAGTAAAGCACTAGAAGGTCAGAGGTCATCAGAGGACAAATCATAGAAACACAACATAAGTCTCAAATACGATTCTGGAAGATTCAGCTTACACTTAACACTAATTCATGCGCGAACCGCAGTGCGGCTCACTCACGTTGATCTTTCCAGACACATattcaaaaagaacaaaaacataaatattcatCAGTAGTGCCCACTGATTGGTCTAAACACCATTTCCACTGTCAATTGACAACCAGAAGACACAAGCGAACAATCGTCAGACACTAAAGGTAGAAAACAACATTTTGAATCGTAATATTGAGtggaaaaaaaaaggaacaaacaaaAATCATCCATTATTCAGGAATGTGAAGGATATCTCTCCACAATGCATTCAGACTTTGGCAGAGAAATCAGAGGTCGTTCACTCCTTGTCCTCAATGAAGTACAAAACGACGCACAATCTTTGTTACACGTGCCCAAAGGCAACTGAAGAGACTAGAAACAAACTAACAGGCCAGCTGAAATTGAGCTTTGATAGTAAAACAAACATCATGACGAATTAGAAAACAAACCGAACGGTATTTGTACTTTCACAGACACGCATGAAGAGCCAACCTTTTGGTTTGAACTTGGCTGGCTTGTCTTATCTACACAGATAAAGAGCCCAGAATATCAACCACAGACGAGTTAATTCATCGCTAGTTTACAGTTAAAGATACTTCACCCATCTAGAATATGGCACGTTAAGTATTACGTAGGAGAAACACGCTCGAAAAGGACCTCACAGACATACACTCGTCACGTGGCGCCAAATACATTGTACTACTCACACTTCTAAAACCATGTCACGTCATACGTCTCTAGGAGCGGGTGAAGTACCTTTCGGAGACGGATTAAAAAGTTGGTTGTGGTGCTTTTTTCGAGCTAGCAGCAAAGAAAACGgaaaaagtgtgtgtttgtgactgaGCGTCGTGGGTTTGGCCAACTGAATTGCCATCGGCCTGATTTGCATTCCAGAGTGGATAAATTGGTGTCAAATGTAACAAGACATGAGTGGTAAATATTCTGAAAATATACATCGCTGAAAGAAACAGTATggcgtcattaaaaaaaaaaagaaaacattttggcCTTATAGCAATGCAggtatacattttttgtttatatatatatttgtttgctattttaaaaaatataaagttttttgTCATAGTTTCTATTATTGGCTTAggttattaaataaaagtttgttaatcttttatttaccTTTTGTTTTAAAGTAACATGCTGCTTTTTAATATGGCAGTTTTACGTTTTTATAGGTCATCCATTTTGTTTCATGCACTCTTGTTGATTTCGTAACTTTCCCATTATCTACACGGCGAGAGTCAGTTTACTTGTTGTGAGGAGACCCTGGTCAACCCCTGTACATAAATGAAGATGTCGTCGGATTTACATTGTGGGTATAGAATTCCTCTTACTCTCAAATACTAATGGTACATCTCCCAATATCGTGATCTGGCCTTTGCCTTTTTAACCTCTTTAAGTCAGTCCTGTACACAGACAGAAGAGAATCTGAACAGCCCTTAAGTCCCTCTTGGTCCATCAGTCTTGCTCGCTCTGTCTCTTCTCTTTTAAAGAGTGAAAGTCCAAGTACCAGAGTTGCGCCCTCTTGTGGCACGACAGTGAAACACGCCTCCAAGAGGACCCTCTAAAACTGATACCACTTCTTGTCTTTGCATTTAAGCATTAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-070912-421 No description available

Ensembl:

ensembl_id ENSDARG00000094791

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075128 False 2654 lncRNA 0.39 2 27411331 27416223
TCONS_00073182 False 429 mRNA 0.49 3 27411502 27416612
TCONS_00075129 True 2439 lncRNA 0.39 2 27411615 27416223

Neighbor

gene id symbol gene type direction distance location
XLOC_037176 tlr20.3 coding upstream 31592 27379014 ~ 27379739 (+)
XLOC_037175 tlr20.3 coding upstream 39452 27371240 ~ 27371879 (+)
XLOC_037174 tlr20.2 coding upstream 55998 27352298 ~ 27355333 (+)
XLOC_037173 NA coding upstream 61970 27348630 ~ 27349361 (+)
XLOC_037172 slc10a2 coding upstream 66648 27339505 ~ 27344683 (+)
XLOC_037178 lcmt2 coding downstream 303655 27720267 ~ 27734078 (+)
XLOC_037179 rab5b coding downstream 333878 27750490 ~ 27790405 (+)
XLOC_037180 BX511265.1 coding downstream 365892 27782504 ~ 27787376 (+)
XLOC_037181 NA coding downstream 390915 27807527 ~ 27811141 (+)
XLOC_037182 BX511265.5 coding downstream 401313 27817925 ~ 27822574 (+)
XLOC_037170 NA non-coding upstream 87616 27314951 ~ 27323715 (+)
XLOC_037169 NA non-coding upstream 109766 27300664 ~ 27301565 (+)
XLOC_037168 BX928746.1 non-coding upstream 128895 27282322 ~ 27282436 (+)
XLOC_037167 FP101883.1 non-coding upstream 186197 26896785 ~ 27225134 (+)
XLOC_037183 BX511265.3 non-coding downstream 417833 27834445 ~ 27844628 (+)
XLOC_037184 BX511265.2 non-coding downstream 420450 27837062 ~ 27840540 (+)

Expression


Co-expression Network