G1797580


Basic Information

Item Value
gene id G1797580
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29745423 ~ 29746868 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2057148
tgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtagttggcaAACTCTTATAGGCTCTATCTacactctctccccatctcccataTATCGCCATACATTCCTCTTtaattacatacattttcccccatttaatacattttctccTAGACATTTCAGGAATGTGTTTTCTAATACAGGTTTTAAAGTTCTTAACAGTGTCCCAATACATTAAGGTTATAAACACAATGTGTGTGAAACATTTTTCAGATTTCTAATGGATCAGAAACATTTGGCAGCACAGAATCAGCATTAATACACAAGGCATCAGCAGtggcctactgtactgtatgctgTCAAGCAGTTTGACAACGTGGAGTCTACAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTCTACAGCTATGCTGTTAAGCAGTTTGACAACGTGGAGTCGACAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTCTACAGCCAAGCAGTTTGACAACGTGGAGTCTACAGCCAAGCAGTTTGACAACGTGGAGTCTACAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTCTACAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTCTACAGCCAAGCAGTTTGACAACGTGGAGTCTACAGCCAAGCAGTTTGACAACGTGGAGTCTATAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTCTATAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTCTACAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTCTACAGCTATGCGGTCAAGCAGTTTGACAACGTGGAGTCTACAGCCAAGCAGTTTGACAACGTGGAGTCTACAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTCTACAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTCTACAGCTATGCTGTCAAGCAGTTTGACAACGTGAAGTCTACAGCCAAGCAGTTTGACAACGTGGAGTCTACAGCCAAGCAGTTTGACAATGTGGAGTCTATAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTCTATAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTCTATAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTCTATAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTTTATAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTCTACAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTCTACAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTCTACAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTCTATAGCTATGCTGTCAAGCAGTTTGACAACATGGAGTCTATAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTCTATAGCTATGCTGTCAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2057148 True 1446 lncRNA 0.45 1 29745423 29746868

Neighbor

gene id symbol gene type direction distance location
LOC118943646 NA coding upstream 123349 29621005 ~ 29622074 (+)
LOC110501709 LOC106582175 coding upstream 156340 29500150 ~ 29589083 (+)
tsc22d1 LOC107713726 coding upstream 318017 29340787 ~ 29427406 (+)
LOC110501706 LOC106582180 coding upstream 452848 29290937 ~ 29292575 (+)
LOC110501705 NA coding upstream 481005 29260930 ~ 29264418 (+)
LOC110501715 LOC106582169 coding downstream 111887 29858755 ~ 29872101 (+)
LOC118943587 NA coding downstream 147258 29894126 ~ 29903673 (+)
LOC110501716 LOC106582159 coding downstream 165413 29912281 ~ 29915808 (+)
LOC118943632 LOC100194703 coding downstream 170905 29917773 ~ 29933035 (+)
LOC110501719 LOC106582226 coding downstream 257813 30004681 ~ 30082509 (+)
G1797632 NA non-coding upstream 1518 29743321 ~ 29743905 (+)
G1797631 NA non-coding upstream 2650 29742481 ~ 29742773 (+)
G1797626 NA non-coding upstream 9412 29735696 ~ 29736011 (+)
G1797590 NA non-coding upstream 59437 29685731 ~ 29685986 (+)
G1797579 NA non-coding upstream 65243 29679877 ~ 29680180 (+)
G1797678 NA non-coding downstream 86197 29833065 ~ 29833383 (+)
G1797680 NA non-coding downstream 88631 29835499 ~ 29836412 (+)
G1797681 NA non-coding downstream 90246 29837114 ~ 29837376 (+)
G1797687 NA non-coding downstream 97209 29844077 ~ 29844704 (+)
G1797693 NA non-coding downstream 104672 29851540 ~ 29851903 (+)
G1797582 NA other upstream 569 29744192 ~ 29744854 (+)
LOC110501700 LOC106582186 other upstream 735150 28997763 ~ 29010281 (+)
LOC110502085 LOC106582160 other upstream 761197 28977890 ~ 28984226 (+)
G1795550 NA other upstream 1653307 28091565 ~ 28092116 (+)
LOC110501693 LOC106582057 other upstream 1707345 28036917 ~ 28052019 (+)
G1798168 NA other downstream 753788 30500656 ~ 30545954 (+)
G1798397 NA other downstream 1141793 30888661 ~ 30891067 (+)
G1798579 NA other downstream 1499613 31246481 ~ 31292205 (+)
G1798597 NA other downstream 1546684 31293552 ~ 31297419 (+)

Expression


Co-expression Network