G1797680


Basic Information

Item Value
gene id G1797680
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29835499 ~ 29836412 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2057259
TAAAGATGAGGAAATGTTTGCCAATAGAACTTAGCAATTTATTACACATCAGTAATTACATGATTTCTCCGCACATATAGAATACTaggcaacatgacaacacagggtTGGTGAAAAACAATTAGCAACAATCAAACACTTTAAGGAAATGACAATCACATCAAATTAAAGtactatatacaaaatatattACAGTCAATTACACACATAGTTACACACATAGCACgaagtaaaaaaaatatcagaaagagGCTTGGCTGAGCAGTGTTCCCACAAACTAAGTTCTTTAAACAGAACGATCATGTGGTATATTAGGTCCGAAACAGCCAGCTAATACTTTTGGTACAAATTTGAAAAATATTTGGCCAAGAAGTGATCAGAAGTATCCCTGGTGAGTGGTGTGAGGCATGGAGAGTGGTCTAGGCTTCTCCAGTGCTTTCTAAAagacctacagatgtaggatcttaatttgagaaagtttgctacagcagtaaaataatcctgcagcaacaggaaatgtgaattattatctgGATTATAATAAATTGACATGTTTGTAGGGGTTTATACATTTCATTCATTAGGGAAAATTAAGTCTAAAAcctcaaagtggaaattacaaactttagaagcctttttaaaactgaaatactctacaagtttgcatttcctgctttgcAGTAAAATTCTTATCAATAAAagaatgatcaaattaagatcctacatctgtaaaccCACCCTGGACTTTTTCTAGTGAGCGGAGAGTCTTCTACTTGAGAGTGAGTACACAGGAAATGTGTTGTGGTTCCAGGGGGTTCTGTTAGAGCTGGTCACAGCTCAGTGCCAGGGTGATGTCACAGTGATGTCATATCCTCTCTCTCAGAACCAAACAGTATTGACTTTGTCCTGATCCA
>TU2057257
TCTCCGCACATATAGAATACTaggcaacatgacaacacagggtTGGTGAAAAACAATTAGCAACAATCAAACACTTTAAGGAAATGACAATCACATCAAATTAAAGtactatatacaaaatatattACAGTCAATTACACACATAGTTACACACATAGCACgaagtaaaaaaaatatcagaaagagGCTTGGCTGAGCAGTGTTCCCACAAACTAAGTTCTTTAAACAGAACGATCATGTGGTATATTAGGTCCGAAACAGCCAGCTAATACTTTTGGTACAAATTTGAAAAATATTTGGCCAAGAAGTGATCAGAAGTATCCCTGGTGAGTGGTGTGAGGCATGGAGAGTGGTCTAGGCTTCTCCAGTGCTTTCTAAAagacctacagatgtaggatcttaatttgagaaagtttgctacagcagtaaaataatcctgcagcaacaggaaatgtgaattattatctgGATTATAATAAATTGACATGTTTGTAGGGGTTTATACATTTCATTCATTAGGGAAAATTAAGTCTAAAAcctcaaagtggaaattacaaactttagaagcctttttaaaactgaaatactctacaagtttgcatttcctgctttgcAGTAAAATTCTTATCAATAAAagaatgatcaaattaagatcctacatctgtaaaccCACCCTGGACTTTTTCTAGTGAGCGGAGAGTCTTCTACTTGAGAGTGAGTACACAGGAAATGTGTTGTGGTTCCAGGGGGTTCTGTTAGAGCTGGTCACAGCTCAGTGCCAGGGTGATGTCACAGTGATGTCATATCCTCTCTCTCAGAACCAAACAGTATTGACTTTGTCCTGATCCA

Function

NR:

description
nucleotide-binding oligomerization domain-containing protein 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2057259 False 914 lncRNA 0.36 1 29835499 29836412
TU2057257 True 849 lncRNA 0.37 1 29835564 29836412

Neighbor

gene id symbol gene type direction distance location
LOC118943646 NA coding upstream 213425 29621005 ~ 29622074 (+)
LOC110501709 LOC106582175 coding upstream 246416 29500150 ~ 29589083 (+)
tsc22d1 LOC107713726 coding upstream 408093 29340787 ~ 29427406 (+)
LOC110501706 LOC106582180 coding upstream 542924 29290937 ~ 29292575 (+)
LOC110501705 NA coding upstream 571081 29260930 ~ 29264418 (+)
LOC110501715 LOC106582169 coding downstream 22343 29858755 ~ 29872101 (+)
LOC118943587 NA coding downstream 57714 29894126 ~ 29903673 (+)
LOC110501716 LOC106582159 coding downstream 75869 29912281 ~ 29915808 (+)
LOC118943632 LOC100194703 coding downstream 81361 29917773 ~ 29933035 (+)
LOC110501719 LOC106582226 coding downstream 168269 30004681 ~ 30082509 (+)
G1797678 NA non-coding upstream 2116 29833065 ~ 29833383 (+)
G1797580 NA non-coding upstream 88631 29745423 ~ 29746868 (+)
G1797632 NA non-coding upstream 91594 29743321 ~ 29743905 (+)
G1797631 NA non-coding upstream 92726 29742481 ~ 29742773 (+)
G1797626 NA non-coding upstream 99488 29735696 ~ 29736011 (+)
G1797681 NA non-coding downstream 702 29837114 ~ 29837376 (+)
G1797687 NA non-coding downstream 7665 29844077 ~ 29844704 (+)
G1797693 NA non-coding downstream 15128 29851540 ~ 29851903 (+)
G1797733 NA non-coding downstream 74397 29910809 ~ 29911312 (+)
G1797957 NA non-coding downstream 163499 29999911 ~ 30000210 (+)
G1797582 NA other upstream 90645 29744192 ~ 29744854 (+)
LOC110501700 LOC106582186 other upstream 825226 28997763 ~ 29010281 (+)
LOC110502085 LOC106582160 other upstream 851273 28977890 ~ 28984226 (+)
G1795550 NA other upstream 1743383 28091565 ~ 28092116 (+)
LOC110501693 LOC106582057 other upstream 1797421 28036917 ~ 28052019 (+)
G1798168 NA other downstream 664244 30500656 ~ 30545954 (+)
G1798397 NA other downstream 1052249 30888661 ~ 30891067 (+)
G1798579 NA other downstream 1410069 31246481 ~ 31292205 (+)
G1798597 NA other downstream 1457140 31293552 ~ 31297419 (+)

Expression


Co-expression Network