G1798055


Basic Information

Item Value
gene id G1798055
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30159070 ~ 30159323 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2057677
cCTGcgagtgcggcgaggtggaatagcccgcactgggctatgcaggcgaaccggggacaccatgcgcaaggctggtgccatgtaagccggcccaaggagacgcactggggaccagatgcgtagagccggcttcatggcacttggctcaatgctcactctagcccggccgatacgcggagctggtatgtaccgcaccgggctatgcacccgcactggggacaccatgtgctccacagcataacacggtgcctgcc

Function

NR:

description
PREDICTED: uncharacterized protein LOC106595571

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2057677 True 254 lncRNA 0.64 1 30159070 30159323

Neighbor

gene id symbol gene type direction distance location
LOC110502086 NA coding upstream 33549 30120858 ~ 30125521 (+)
akap17a LOC106582227 coding upstream 40730 30102878 ~ 30118340 (+)
LOC110501719 LOC106582226 coding upstream 76561 30004681 ~ 30082509 (+)
LOC118943632 LOC100194703 coding upstream 226035 29917773 ~ 29933035 (+)
LOC110501716 LOC106582159 coding upstream 243262 29912281 ~ 29915808 (+)
LOC110501723 LOC106582229 coding downstream 19396 30178719 ~ 30203292 (+)
arsh LOC106582230 coding downstream 54341 30213664 ~ 30217941 (+)
LOC110501728 LOC106582235 coding downstream 276000 30435323 ~ 30453758 (+)
LOC110501732 LOC106582240 coding downstream 311089 30470412 ~ 30487614 (+)
LOC110501730 LOC106582240 coding downstream 346961 30506284 ~ 30519043 (+)
G1798003 NA non-coding upstream 8999 30147881 ~ 30150071 (+)
G1798050 NA non-coding upstream 17741 30140766 ~ 30141329 (+)
G1798048 NA non-coding upstream 21122 30137672 ~ 30137948 (+)
G1798038 NA non-coding upstream 32221 30126128 ~ 30126849 (+)
G1798036 NA non-coding upstream 36325 30122490 ~ 30122745 (+)
G1798062 NA non-coding downstream 11112 30170435 ~ 30170712 (+)
G1798064 NA non-coding downstream 12743 30172066 ~ 30172292 (+)
G1798068 NA non-coding downstream 15884 30175207 ~ 30175689 (+)
G1798069 NA non-coding downstream 18324 30177647 ~ 30177987 (+)
G1798089 LOC100380853 non-coding downstream 50796 30210119 ~ 30210340 (+)
G1797582 NA other upstream 414216 29744192 ~ 29744854 (+)
LOC110501700 LOC106582186 other upstream 1148797 28997763 ~ 29010281 (+)
LOC110502085 LOC106582160 other upstream 1174844 28977890 ~ 28984226 (+)
G1795550 NA other upstream 2066954 28091565 ~ 28092116 (+)
G1798168 NA other downstream 341333 30500656 ~ 30545954 (+)
G1798397 NA other downstream 729338 30888661 ~ 30891067 (+)
G1798579 NA other downstream 1087158 31246481 ~ 31292205 (+)
G1798597 NA other downstream 1134229 31293552 ~ 31297419 (+)
LOC110501767 LOC106582273 other downstream 2208313 32317123 ~ 32374208 (+)

Expression


Co-expression Network