G1798064


Basic Information

Item Value
gene id G1798064
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30172066 ~ 30172292 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2057686
GGTTTAGCGTTAATCCTTGGGTTAACAAATGCCTGTGTGCAAGGAGGGTAAACTAGCCCTGGGACAGTTTTAGCCTGGGTTAAAGAGATTGAGAAGGAGGTAGCGTCTGTAaggaaggagaaaggagggagaaagagaggggaggacagagggagaggaaggaataTCTAACCTCAATGACCTCTTACCCCTGCTATCGACTTGTTGCtagtacccagtgtatatag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2057686 True 227 lncRNA 0.48 1 30172066 30172292

Neighbor

gene id symbol gene type direction distance location
LOC110502086 NA coding upstream 46545 30120858 ~ 30125521 (+)
akap17a LOC106582227 coding upstream 53726 30102878 ~ 30118340 (+)
LOC110501719 LOC106582226 coding upstream 89557 30004681 ~ 30082509 (+)
LOC118943632 LOC100194703 coding upstream 239031 29917773 ~ 29933035 (+)
LOC110501716 LOC106582159 coding upstream 256258 29912281 ~ 29915808 (+)
LOC110501723 LOC106582229 coding downstream 6427 30178719 ~ 30203292 (+)
arsh LOC106582230 coding downstream 41372 30213664 ~ 30217941 (+)
LOC110501728 LOC106582235 coding downstream 263031 30435323 ~ 30453758 (+)
LOC110501732 LOC106582240 coding downstream 298120 30470412 ~ 30487614 (+)
LOC110501730 LOC106582240 coding downstream 333992 30506284 ~ 30519043 (+)
G1798062 NA non-coding upstream 1354 30170435 ~ 30170712 (+)
G1798055 NA non-coding upstream 12743 30159070 ~ 30159323 (+)
G1798003 NA non-coding upstream 21995 30147881 ~ 30150071 (+)
G1798050 NA non-coding upstream 30737 30140766 ~ 30141329 (+)
G1798048 NA non-coding upstream 34118 30137672 ~ 30137948 (+)
G1798068 NA non-coding downstream 2915 30175207 ~ 30175689 (+)
G1798069 NA non-coding downstream 5355 30177647 ~ 30177987 (+)
G1798089 LOC100380853 non-coding downstream 37827 30210119 ~ 30210340 (+)
G1798095 NA non-coding downstream 77028 30249320 ~ 30249550 (+)
G1798139 NA non-coding downstream 176394 30348686 ~ 30348922 (+)
G1797582 NA other upstream 427212 29744192 ~ 29744854 (+)
LOC110501700 LOC106582186 other upstream 1161793 28997763 ~ 29010281 (+)
LOC110502085 LOC106582160 other upstream 1187840 28977890 ~ 28984226 (+)
G1795550 NA other upstream 2079950 28091565 ~ 28092116 (+)
G1798168 NA other downstream 328364 30500656 ~ 30545954 (+)
G1798397 NA other downstream 716369 30888661 ~ 30891067 (+)
G1798579 NA other downstream 1074189 31246481 ~ 31292205 (+)
G1798597 NA other downstream 1121260 31293552 ~ 31297419 (+)
LOC110501767 LOC106582273 other downstream 2195344 32317123 ~ 32374208 (+)

Expression


Co-expression Network