G1798191 (LOC106581772)


Basic Information

Item Value
gene id G1798191
gene name LOC106581772
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30424079 ~ 30424311 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2057826
cctctcatcgctacagcGGTGGAATCATGTCACAGGGCGCAGTTCTTCAcgaaactggacctcaggagcgcgtataatctggtgcgtattcgggagggagatgagtggaaaaccgcgtttagtaccacatctggccattatgagtacctcgtcatgccgtacgggttaaagaatgctccagccatcTTTCAATCCTTCGtcgatgagattctcagggacctgcacggacaGGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2057826 True 233 lncRNA 0.53 1 30424079 30424311

Neighbor

gene id symbol gene type direction distance location
arsh LOC106582230 coding upstream 206138 30213664 ~ 30217941 (+)
LOC110501723 LOC106582229 coding upstream 220787 30178719 ~ 30203292 (+)
LOC110502086 NA coding upstream 298558 30120858 ~ 30125521 (+)
akap17a LOC106582227 coding upstream 305739 30102878 ~ 30118340 (+)
LOC110501719 LOC106582226 coding upstream 341570 30004681 ~ 30082509 (+)
LOC110501728 LOC106582235 coding downstream 11012 30435323 ~ 30453758 (+)
LOC110501732 LOC106582240 coding downstream 46101 30470412 ~ 30487614 (+)
LOC110501730 LOC106582240 coding downstream 81973 30506284 ~ 30519043 (+)
LOC110501731 LOC106582241 coding downstream 128050 30552361 ~ 30575546 (+)
trnal-caa-106 NA coding downstream 155185 30579496 ~ 30579604 (+)
G1798149 mab21l3 non-coding upstream 21381 30401673 ~ 30402698 (+)
G1798148 mab21l3 non-coding upstream 23705 30399178 ~ 30400374 (+)
G1798139 NA non-coding upstream 75157 30348686 ~ 30348922 (+)
G1798095 NA non-coding upstream 174529 30249320 ~ 30249550 (+)
G1798089 LOC100380853 non-coding upstream 213739 30210119 ~ 30210340 (+)
G1798194 NA non-coding downstream 4225 30428536 ~ 30432515 (+)
G1798195 NA non-coding downstream 8297 30432608 ~ 30432833 (+)
G1798403 sucla2 non-coding downstream 476674 30900985 ~ 30901385 (+)
G1798446 NA non-coding downstream 547300 30971611 ~ 30971848 (+)
G1798447 NA non-coding downstream 551721 30976032 ~ 30976479 (+)
LOC118943632 LOC100194703 other upstream 498697 29917773 ~ 29933035 (+)
G1797582 NA other upstream 679225 29744192 ~ 29744854 (+)
LOC110501700 LOC106582186 other upstream 1413806 28997763 ~ 29010281 (+)
LOC110502085 LOC106582160 other upstream 1439853 28977890 ~ 28984226 (+)
G1795550 NA other upstream 2331963 28091565 ~ 28092116 (+)
G1798168 NA other downstream 76345 30500656 ~ 30545954 (+)
G1798397 NA other downstream 464350 30888661 ~ 30891067 (+)
G1798579 NA other downstream 822170 31246481 ~ 31292205 (+)
G1798597 NA other downstream 869241 31293552 ~ 31297419 (+)
LOC110501767 LOC106582273 other downstream 1943325 32317123 ~ 32374208 (+)

Expression


Co-expression Network