G1798446


Basic Information

Item Value
gene id G1798446
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30971611 ~ 30971848 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2058103
CGGAAACCTAAAGACGAGCAGGAccggaaagaggtggagagagttgCTGGCAGGTGAACTGGCATGAAGGATTCCATTCCAGAACTTTTCCAGAGGGCCAGTCAATTTGAGGATTATGGGTGGAAAGCCACAGATGTCAAAGAACCAGGTGGAGCTCAGGGGATTCCACTAGATGTAACTGTATAAGCTCCACATGGTAATCCAGAACTCGTAGCTGAATAGGCATGGTGCATTGCTT

Function

NR:

description
Retrotransposable element Tf2 protein type 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2058103 True 238 lncRNA 0.49 1 30971611 30971848

Neighbor

gene id symbol gene type direction distance location
LOC110501741 nek5 coding upstream 10891 30948656 ~ 30960720 (+)
LOC110501739 LOC106582246 coding upstream 27680 30913631 ~ 30943931 (+)
LOC110502123 NA coding upstream 263160 30707128 ~ 30708451 (+)
LOC110501734 LOC106582244 coding upstream 276705 30591869 ~ 30694906 (+)
trnal-caa-107 NA coding upstream 391497 30580006 ~ 30580114 (+)
LOC100136146 LOC106582249 coding downstream 5047 30976895 ~ 30995309 (+)
rl31 rl31 coding downstream 27837 30999685 ~ 31003643 (+)
LOC118943732 NA coding downstream 30637 31002485 ~ 31002621 (+)
LOC110501747 LOC106582251 coding downstream 65278 31037126 ~ 31039631 (+)
LOC110501749 LOC106582255 coding downstream 95645 31067493 ~ 31074290 (+)
G1798403 sucla2 non-coding upstream 70226 30900985 ~ 30901385 (+)
G1798195 NA non-coding upstream 538778 30432608 ~ 30432833 (+)
G1798194 NA non-coding upstream 539096 30428536 ~ 30432515 (+)
G1798191 LOC106581772 non-coding upstream 547300 30424079 ~ 30424311 (+)
G1798149 mab21l3 non-coding upstream 568913 30401673 ~ 30402698 (+)
G1798447 NA non-coding downstream 4184 30976032 ~ 30976479 (+)
G1798473 NA non-coding downstream 59893 31031741 ~ 31031995 (+)
G1798474 NA non-coding downstream 61031 31032879 ~ 31033235 (+)
G1798475 NA non-coding downstream 62093 31033941 ~ 31034195 (+)
G1798489 NA non-coding downstream 70630 31042478 ~ 31042685 (+)
G1798397 NA other upstream 80544 30888661 ~ 30891067 (+)
G1798168 NA other upstream 425657 30500656 ~ 30545954 (+)
LOC118943632 LOC100194703 other upstream 1046229 29917773 ~ 29933035 (+)
G1797582 NA other upstream 1226757 29744192 ~ 29744854 (+)
LOC110501700 LOC106582186 other upstream 1961338 28997763 ~ 29010281 (+)
G1798579 NA other downstream 274633 31246481 ~ 31292205 (+)
G1798597 NA other downstream 321704 31293552 ~ 31297419 (+)
LOC110501767 LOC106582273 other downstream 1395788 32317123 ~ 32374208 (+)
G1800754 NA other downstream 1938945 32910793 ~ 32914182 (+)
LOC110501795 LOC106596205 other downstream 4768591 35740427 ~ 35760519 (+)

Expression


Co-expression Network