G1801069


Basic Information

Item Value
gene id G1801069
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 32798605 ~ 32799642 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2060959
TGCTAATTCAATGTTAAAGCACCTTGGATTTCAACGTTGATGAGAGTATCAGCTCTGCCAAAGTGATTGTGCAGTCTGACTCTGTATTTTCCTCCATGTACCCTGCGTTGCACATTCTTGATCACCAGGTGAGTGTAATGCTCTGTGTTTTCAATGCTGATATTCTCAGAAGCCACCACAGTTGTAGCTCCATAAAGCCACATGATCTTAGGCTCAGGGCGTCCAATGTAGGCAACATGTAGTCGCAGAGTAGTGCCGCTTTCGGCATAGTAGGTATTCTTCAATGGGAAGTCAGGATTGAACTGTGGAGCAGTTTCCAAAACGAGAATGCCACTGGTCTCTGCTTCACCTGCATCATTGATAGCCTTGCATGTGTATTCTCCTTCATCCTCttgttggtctgtcataatggtcAGTGAATGGTTACGGCCATCAGAGCTCATCTCATATTTACGAGACTCGATTATCTCCTTGCCAGATTTATACCATTTGATATCGGGAAGAGGTCTACCAATAATCTGGCATTTCATAATTCCTGGTTGGTATAATTTAGTCGTAACTTCATCCATTTCTTTCCTCAGGCTTGGTTGAGTTCACTGCTCAGTTTGGTCTTGATGCATGTGGCTGTTCTGCGTGGTCTGCTGATTCCGGTCTCATTCTCAGCCATCACTCTGAACTCATACTCAGTGGCTTCGGCCAGACCAGTTATGGTGAACTTTTTCTCCTTGGTGCGTGTCTTGTTGCATTTCTTCCAGGTAGCCTCTGCAGACTTCCTGTATTCAACCCAGTAACCAAGGACCTCCTTTCCACCATCGCATTCTGGCGCCGCCCACTTGATGGCGACTGCGTCCTTTGTGACAGTTACTGTGTCAATCTCGCCTGGTTGGCTTGGTTTGT

Function

NR:

description
titin-like isoform X9

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2060959 True 897 lncRNA 0.46 2 32798605 32799642

Neighbor

gene id symbol gene type direction distance location
LOC118943602 NA coding downstream 619600 32178641 ~ 32179005 (-)
ube2e3 ub2e3 coding downstream 800254 31944574 ~ 31998351 (-)
itga4 itga4 coding downstream 1024593 31736087 ~ 31774012 (-)
itprid2 ssfa2 coding downstream 1180000 31572817 ~ 31618605 (-)
LOC110501758 ppr1c coding downstream 1231098 31544328 ~ 31567507 (-)
LOC110501778 LOC106586454 coding upstream 56317 32855959 ~ 32882104 (-)
LOC110501785 LOC100194642 coding upstream 371600 33171242 ~ 33180375 (-)
LOC110502092 erbb4 coding upstream 602106 33401748 ~ 33509768 (-)
LOC118936582 erbb4 coding upstream 698022 33497664 ~ 33632178 (-)
LOC110501786 LOC106586446 coding upstream 887540 33687182 ~ 33927932 (-)
G1801217 NA non-coding downstream 77163 32720262 ~ 32721442 (-)
G1801198 NA non-coding downstream 90499 32707580 ~ 32708106 (-)
G1801144 NA non-coding downstream 158583 32639243 ~ 32640022 (-)
G1801061 LOC106582275 non-coding downstream 255943 32541517 ~ 32542662 (-)
G1800628 LOC106582274 non-coding downstream 410163 32385497 ~ 32388442 (-)
G1801067 NA non-coding upstream 1147 32800789 ~ 32806114 (-)
G1801066 NA non-coding upstream 6932 32806574 ~ 32809523 (-)
G1801322 NA non-coding upstream 113691 32913333 ~ 32913893 (-)
G1801327 NA non-coding upstream 120221 32919863 ~ 32923262 (-)
G1801333 NA non-coding upstream 154154 32953796 ~ 32956422 (-)
G1801071 NA other downstream 20828 32759858 ~ 32777777 (-)
G1801195 NA other downstream 94282 32703800 ~ 32704323 (-)
LOC110501748 LOC106582253 other downstream 1756389 31037006 ~ 31042302 (-)
G1799132 LOC106582249 other downstream 1803303 30976894 ~ 30995302 (-)
LOC110502090 LOC106586488 other downstream 1835071 30960714 ~ 30963603 (-)
G1801352 NA other upstream 150825 32950467 ~ 32953670 (-)
G1801331 NA other upstream 158680 32958322 ~ 32960485 (-)
bard1 bard1 other upstream 1718864 34473620 ~ 34544232 (-)
G1803964 NA other upstream 2326837 35126479 ~ 35126833 (-)
LOC110502094 LOC106582301 other upstream 2407821 35138330 ~ 35471205 (-)

Expression


Co-expression Network