G1800800


Basic Information

Item Value
gene id G1800800
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 33171239 ~ 33176016 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2060662
atgtttttaaaatattttaatcATTCTTTCAGAGGCAACAAGAATATGAACATTTGGACTGCTGGGCCACCACCAGTGTTTGTCTGTTTTAACCTCTCCCCTATAGCTACACTAaggatgagtcccaaatggcaccctattgggctctagtcaaaactagtgcactatatagggattagagtgccatttgggacacattctcACTCTCCCGCAGAGCAAAGAATAAGAGCCGCGACACCGGAGGGTTTTTGAAAAGTTTATTTTGTGAAATAGCGGAGGagaaaaatgatttaagacaTAGGGGAGAGTGAGTTTTGATGGCCAGTCTAGAGCAAAGCCAGTCACCTCTACTGGCCCAATCCAGGCAGCAAGTAAGGGATGGAATGGGTAGCTCCTCCCTACCCCCTTTCCTTCACCGACCCACGGTGGAGAGGCATACCCCGCCAAGATGGCGGGGGACAAGACAACAAGAGCATCTGCTGTTTGGTGGTTGAAAAGAAAGGACAGCTTCTaatggaggagaatagagagCAGAGAGTCGAAGGTCGGAGTCAgaccaaaaaaaaaagaatgaacaaaaaaaataacGGTTTAGAAATGACATCTCATAGTCCTTTATCCCCCTGTCTGTTCCTCAGGTGGTTGTTGACTAACAGTGGGGACTGGATGTCCTGACACCATTGGGTCTGCAGATAACACGTTAGCTTCCTCGTTAGCCACTGCAGCCGGAGGATCCTTAAATAGACATGATGTGCTTGACAAAGGCTgtaggggtgagggggagggaggagtgaggggagatggaggggtgtggaaggagagtgagggaggtgtgaggggaggtagagggaggatgaggtaggggagaggagaggaagggagggagggagaggagaggaagggagggaggggtgaggaggaggtagGCAGAAGGTCACAGGGGAAttaaaaaggagagaaagaggagtgagcTAGTGAAGCATTTGAtctaaattaaaaacaaaaacatcatACAAATCTAGACCTACAGTATAATCTGAAATGTGGCTCTAATGTATGTACAATATATCATAAGACCTGTATGATGTAAGACATTCTTTGCTTCTCAAATTGGACCCTAGTCCCTATGGGCCCGATTGAGACGTAGGACATATACGCCTttcctacgcacttctcagtagttggtattcactCTACAGGTGTGTCTACCTTGAGCACACTGAATAACAGatgtatttgtggaatttccaTTCAATAGGGCTtacagtacatttatcttaagccatccctttaattACGGTGTCCCTTTAATTCCAATTTTGTCGACAGATTGAACAGAATAAATACATTGAGAGAActggttcagaatatagggatcaatgaaagaaatcCATCCAAACATATGCATATATGTCTCCGTTTTCGCACCAACTGGtagatttatttaaaaaaaaactccaaTCTTGTCAAttatttaggcacattttagagttAGGAAAGTATGTGTGAATCATAAATGCACaaaagtggcacagtggtctaaggcactgcatctcagtgctagaggcgtcactacagaccctagttcaattctaggctgtatcacaaacggccatgactgggagtcccatagggcggcgcacaattggcccagcgtcatccgggttagggtttggcctgggtaggccatcattgtaaatattaaattgttcttaaccgacttgcatagttaaataaaggtaaaataaaataaaaaaaatacagtggtttgattcatccaGAAAGTTCAATCCATGAAATATTGGAAGGAGAGAAAAGTATACAATAGCAGttgaacagtagtcctataaatctccCCTAATAATCCTCACTGATCATGTGATGAACTGTgtgccaggctccaggtttaaactgctaCCTACGGTCTGcgttccataatgattcaaataggATACATGTCCCAAGTTATTGAAGGACTTGTAATAAGTTAGCCTGATATGATCCACTATCAGTGGCGACCCGTcgttcagggcaggtggggctttGTTGTAATTCATTTTTTTTCATCATATTTGAAATAACTTGTAGGAAATACAGTTcatgacactgtcatgaagcattatgaccatcatagtCATATAAGGCAGATAGGCCTGTCATGTTCATGCCCTTATATCAATCAACAGTCAACAATACGGTGTCTTGTCcggctcctgaaatctgctcctgcattcatcccagtcgtCAGCAACAGAGCACTGGGGTGACTGCATGactgacatcaatgtgtgcgtCGCAATTACAAAGAAAATGTAGTATGGTCAACAACGAAAGTAAAAAAGACAACATAGCCTACATGTGAACGGTATGTTTATGGTGTAATGGAATCTTTTTCCTTGTATGGTAGGTCATGTGGGTTTTCATACTCTTATGTAGGTGCCATAACCAGTCctaaaataatgcaatatatatgtgtgtacatatatgtgtcatgacagtgttatgaccatattataacagGTTATGACTCGTTATGTCAGCCGTTATGACAtcttatgacatggttatgaccatgtcataacgtgttatgacgctgggtgtcaagtaaagtgttgcCAAGCATTCTACATTCTATGCTGTTCCATTTATTTGAACCGTTTCTCGACCTTATTCGTCGCGTGTGAAGGTGGTGGAACTGTcagggaattaagtcaaggtcagaatatggaTGTATTCGCCACACCGTCATTTCTTTCATCTCCACCCCAAATGAATAGCGGGccaatagcatgctattctcatgctgaaattcaaggtcagaatatgcaAAGAGAGAGAAGTGCATAAAAATGTGATTTCATTTTTAACTTTGTATCAACAATCTGCTTGATAAGGTGGCAATTACTTAATTGGAGTTTAGTCAACTGAGTAATACATAAATAGTCACCTACTTATAATGCACATTGTTGAAGAcaagtttcaaatcaaatcacgcTGACAGATTATAATGAGGTTAATATTAATATTTGCACTTTGCATATTGCCTTAGCACTACGAAAatgggtaccatttgggatgtgaCCTAAGACTTAGAAGACTTAGAAGACTTGAAGGCTTACCTTCAAAGTTGATACTGCCGTTCTCGTCCTCCTGTCCCTGCATGAGGGCATCAATCTCAGCCTCGGTCATCTTCTcacctaGTTCCAAGGACAATACGCAGCTCAGCCCCCATCACGGTGCCGTTGCCCTCCTTGTCAAAGACGCGCAGACCTTCAACGTAGTCATCGAAGGTTCCCTTGTTTGGGTCATTGACGATGTGCTGGAGCATGGGGAGGAAGGCCTCGAACTCTAATCTCTTGCCGGCCATTTCTGTGGGCAGCCAGAGTGAGAGGAAACGCATTAGAAGTTGACAGTATGCTCCGAGGTGAAATTTCCCCTAGGCACAGATCTATGATCAGCTTTTCCCtctcctaatcctaaccttaaaccaTTAGTCG
>TU2060663
atgtttttaaaatattttaatcATTCTTTCAGAGGCAACAAGAATATGAACATTTGGACTGCTGGGCCACCACCAGTGTTTGTCTGTTTTAACCTCTCCCCTATAGCTACACTAaggatgagtcccaaatggcaccctattgggctctagtcaaaactagtgcactatatagggattagagtgccatttgggacacattctcACTCTCCCGCAGAGCAAAGAATAAGAGCCGCGACACCGGAGGGTTTTTGAAAAGTTTATTTTGTGAAATAGCGGAGGagaaaaatgatttaagacaTAGGGGAGAGTGAGTTTTGATGGCCAGTCTAGAGCAAAGCCAGTCACCTCTACTGGCCCAATCCAGGCAGCAAGTAAGGGATGGAATGGGTAGCTCCTCCCTACCCCCTTTCCTTCACCGACCCACGGTGGAGAGGCATACCCCGCCAAGATGGCGGGGGACAAGACAACAAGAGCATCTGCTGTTTGGTGGTTGAAAAGAAAGGACAGCTTCTaatggaggagaatagagagCAGAGAGTCGAAGGTCGGAGTCAgaccaaaaaaaaaagaatgaacaaaaaaaataacGGTTTAGAAATGACATCTCATAGTCCTTTATCCCCCTGTCTGTTCCTCAGGTGGTTGTTGACTAACAGTGGGGACTGGATGTCCTGACACCATTGGGTCTGCAGATAACACGTTAGCTTCCTCGTTAGCCACTGCAGCCGGAGGATCCTTAAATAGACATGATGTGCTTGACAAAGGCTgtaggggtgagggggagggaggagtgaggggagatggaggggtgtggaaggagagtgagggaggtgtgaggggaggtagagggaggatgaggtaggggagaggagaggaagggagggagggagaggagaggaagggagggaggggtgaggaggaggtagGCAGAAGGTCACAGGGGAAttaaaaaggagagaaagaggagtgagcTAGTGAAGCATTTGAtctaaattaaaaacaaaaacatcatACAAATCTAGACCTACAGTATAATCTGAAATGTGGCTCTAATGTATGTACAATATATCATAAGACCTGTATGATGTAAGACATTCTTTGCTTCTCAAATTGGACCCTAGTCCCTATGGGCCCGATTGAGACGTAGGACATATACGCCTttcctacgcacttctcagtagttggtattcactCTACAGGTGTGTCTACCTTGAGCACACTGAATAACAGatgtatttgtggaatttccaTTCAATAGGGCTtacagtacatttatcttaagccatccctttaattACGGTGTCCCTTTAATTCCAATTTTGTCGACAGATTGAACAGAATAAATACATTGAGAGAActggttcagaatatagggatcaatgaaagaaatcCATCCAAACATATGCATATATGTCTCCGTTTTCGCACCAACTGGtagatttatttaaaaaaaaactccaaTCTTGTCAAttatttaggcacattttagagttAGGAAAGTATGTGTGAATCATAAATGCACaaaagtggcacagtggtctaaggcactgcatctcagtgctagaggcgtcactacagaccctagttcaattctaggctgtatcacaaacggccatgactgggagtcccatagggcggcgcacaattggcccagcgtcatccgggttagggtttggcctgggtaggccatcattgtaaatattaaattgttcttaaccgacttgcatagttaaataaaggtaaaataaaataaaaaaaatacagtggtttgattcatccaGAAAGTTCAATCCATGAAATATTGGAAGGAGAGAAAAGTATACAATAGCAGttgaacagtagtcctataaatctccCCTAATAATCCTCACTGATCATGTGATGAACTGTgtgccaggctccaggtttaaactgctaCCTACGGTCTGcgttccataatgattcaaataggATACATGTCCCAAGTTATTGAAGGACTTGTAATAAGTTAGCCTGATATGATCCACTATCAGTGGCGACCCGTcgttcagggcaggtggggctttGTTGTAATTCATTTTTTTTCATCATATTTGAAATAACTTGTAGGAAATACAGTTcatgacactgtcatgaagcattatgaccatcatagtCATATAAGGCAGATAGGCCTGTCATGTTCATGCCCTTATATCAATCAACAGTCAACAATACGGTGTCTTGTCcggctcctgaaatctgctcctgcattcatcccagtcgtCAGCAACAGAGCACTGGGGTGACTGCATGactgacatcaatgtgtgcgtCGCAATTACAAAGAAAATGTAGTATGGTCAACAACGAAAGTAAAAAAGACAACATAGCCTACATGTGAACGGTATGTTTATGGTGTAATGGAATCTTTTTCCTTGTATGGTAGGTCATGTGGGTTTTCATACTCTTATGTAGGTGCCATAACCAGTCctaaaataatgcaatatatatgtgtgtacatatatgtgtcatgacagtgttatgaccatattataacagGTTATGACTCGTTATGTCAGCCGTTATGACAtcttatgacatggttatgaccatgtcataacgtgttatgacgctgggtgtcaagtaaagtgttgcCAAGCATTCTACATTCTATGCTGTTCCATTTATTTGAACCGTTTCTCGACCTTATTCGTCGCGTGTGAAGGTGGTGGAACTGTcagggaattaagtcaaggtcagaatatggaTGTATTCGCCACACCGTCATTTCTTTCATCTCCACCCCAAATGAATAGCGGGccaatagcatgctattctcatgctgaaattcaaggtcagaatatgcaAAGAGAGAGAAGTGCATAAAAATGTGATTTCATTTTTAACTTTGTATCAACAATCTGCTTGATAAGGTGGCAATTACTTAATTGGAGTTTAGTCAACTGAGTAATACATAAATAGTCACCTACTTATAATGCACATTGTTGAAGAcaagtttcaaatcaaatcacgcTGACAGATTATAATGAGGTTAATATTAATATTTGCACTTTGCATATTGCCTTAGCACTACGAAAatgggtaccatttgggatgtgaCCTAAGACTTAGAAGACTTAGAAGACTTGAAGGCTTACCTTCAAAGTTGATACTGCCGTTCTCGTCCTCCTGTCCCTGCATGAGGGCATCAATCTCAGCCTCGGTCATCTTCTcacctaGTTCCAAGGACAATACGCAGCTCAGCCCCCATCACGGTGCCGTTGCCCTCCTTGTCAAAGACGCGCAGACCTTCAACGTAGTCATCGAAGGTTCCCTTGTTTGGGTCATTGACGATGTGCTGGAGCATGGGGAGGAAGGCCTCGAACTCTAATCTCTTGCCGGCCATTTccCTCATCAGAAGGGTTGCCCAGGACTTTGCGCACCTCCTTGTTGGTGGGGTTCTGTCCCAGGGCGCGCATGATATCAGCGACCTGGTTGTAAGCCACCTTTGCGTCACCCACCCTGTCGAAGAGACCGAAAGCCTCCTTGTAGtctgtggtgaggtgaggtgagaggagagagagagagaggaagagagagggatgagagagagagagggatgagagagagagaggaagagagagggatgagagagagagaggaagtgtttTATTTATTACTATGCCTGGGCTAGTGGCCAACAGAAGCTATGATAACATACCAAGAGATCTATGAAATGAACATGCACACCACTTtggtgtttttgtgttgttgCAGGGATTATTGTGAATATCTCAATTGAATGATGAGAGCTTCGCCCTATCCATTATAATTGTGTAACTTGATGTAGAATTACCATCtgttctaatatatatatatatatatatat

Function

NR:

description
PREDICTED: myosin light chain 1/3, skeletal muscle isoform

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2060662 False 3497 lncRNA 0.43 2 33171239 33174934
TU2060663 True 3850 lncRNA 0.43 3 33171239 33176016

Neighbor

gene id symbol gene type direction distance location
LOC110501784 LOC106582286 coding upstream 95 32994900 ~ 33171144 (+)
trnaa-ugc-175 NA coding upstream 173730 32997434 ~ 32997509 (+)
LOC110501783 kansl1l coding upstream 178229 32964607 ~ 32993010 (+)
LOC110501782 LOC106582283 coding upstream 210739 32939577 ~ 32960500 (+)
LOC110501780 LOC106582282 coding upstream 262539 32904230 ~ 32908700 (+)
LOC118943604 NA coding downstream 20589 33196605 ~ 33199316 (+)
trnaa-ugc-176 NA coding downstream 619009 33795025 ~ 33795098 (+)
LOC110501788 vwc2l coding downstream 1287717 34463733 ~ 34499490 (+)
LOC110501792 LOC106582299 coding downstream 1426863 34602879 ~ 34772042 (+)
LOC110501793 LOC106582300 coding downstream 1605489 34781505 ~ 34790502 (+)
G1800761 NA non-coding upstream 252552 32918069 ~ 32918687 (+)
G1800759 NA non-coding upstream 268089 32902926 ~ 32903150 (+)
LOC110502125 LOC106582208 non-coding upstream 354481 32811982 ~ 32816908 (+)
G1800724 NA non-coding upstream 359889 32811080 ~ 32811350 (+)
G1799951 NA non-coding upstream 1082681 32087155 ~ 32088558 (+)
G1800801 NA non-coding downstream 58 33176074 ~ 33180752 (+)
G1801513 NA non-coding downstream 41271 33217287 ~ 33217504 (+)
G1801521 NA non-coding downstream 47007 33223023 ~ 33223281 (+)
G1801549 NA non-coding downstream 68824 33244840 ~ 33245183 (+)
G1801558 NA non-coding downstream 73840 33249856 ~ 33250067 (+)
G1800754 NA other upstream 257057 32910793 ~ 32914182 (+)
LOC110501767 LOC106582273 other upstream 797058 32317123 ~ 32374208 (+)
G1798597 NA other upstream 1873820 31293552 ~ 31297419 (+)
G1798579 NA other upstream 1879034 31246481 ~ 31292205 (+)
G1798397 NA other upstream 2280172 30888661 ~ 30891067 (+)
LOC110501795 LOC106596205 other downstream 2564423 35740427 ~ 35760519 (+)
G1804873 NA other downstream 2698546 35874562 ~ 35875452 (+)
G1805191 NA other downstream 3187580 36363596 ~ 36363930 (+)
LOC110501805 dirc2 other downstream 3258984 36435000 ~ 36520762 (+)
LOC110501842 LOC106586352 other downstream 4903850 38079807 ~ 38213191 (+)

Expression


Co-expression Network