XLOC_037248 (BX530407.4)


Basic Information

Item Value
gene id XLOC_037248
gene name BX530407.4
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 32189139 ~ 32192519 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073308
TTTTGATTTTCAGAATTTTTAAAAGCTCTTGGTTACTGAACTTATGCAATTACTCAATTTAAATCTAAAAACAAAGACTGATTAAACTTTTGGCAAACTACTAGTTGATAAAACTAGTTCTTCTAACAGTCCTAATACAGTGACAGTGTGAATGCAAGATGTCCCAAGTGTCTCTTGAATGGAAGGCCATTGGGGTCAAATTATCCAGCGTCATAATTTCCATAACCTTGTCGGTCTGCAGCTCAGGACCGGAATTTAATCCTTATAAGTGGCCATTTACTTCttatttacctgcacagcacttcactagctggactccgttacactcactcccatccgggtcatggcaccaaccCTGCCTGcctgttcatttaatttattatatagctGTTATATTTGCATTGATTTGTCATTATTTAGTATTAGTGTTGCGATAAGTTCTGGTTAGTTATAATGTATGGATGCCCATCATCATTTTAATCTGAATGTCAACCTGTATGTCCTGGCGAGTGACGCTAGGGGGCGATTAGTGAGCAATACATGAGCCGCAGGAGGTTTCACGCATTCTTAAGAAGTCACACAGCCAGTACTGATACACTAATAATATATAACTAAAATATAACTCATGTAAGTAAATGAAATAAGTGATCTGTAACAAGTCTATGGATTAAGGAGTTCAGTGTGCAGTGGGGAGGAGCTGAACACGCAGCGTCAACTGTACAGTAGGTGGCGATATGCACAAAGAATCCAATTCGCCAAAGCTAAGTACTTCTcacagcatctctctctctctgcgtgtGTTTGGTAATATAACAGaTTTTGCAATGTgacaaacaataaatacaatattatgatGCTACCAGAAATCTCTGCCTCTTCTGTGTGTGCAACACATTCGCCGATGGGAAATCTCCATGAAGCATTGTGAACAGAAGAACCCCAAGAGAATAGACTGTCGCTGGTATAGCTCGGTAACATCCTCTTTCATAAAACTCTGGCGGGATGTATGCTTCTGTGCCTGGAGGAGAGACGTTTAGTTTAATCTCTGTGACAGCACCATGTTGGTTATATATACCAGATGGGTTTCAGGTGTGCTTATTAACCAGCTTTCAAATTGTATATTATGTACATTCAtaactagtgttgtcaaaagtatcgactttggtaccaattgatactgacactcatcacagtcatatttgctgagcatgtgaacaccaatggccaatcagtggtgtttaacagcGCTCAAATGGACCTTTTTTAAGGTCACAACACTACTTAAAACACCTACAAGTAAAGTGACTGTATGCTGATTCCATCGTGAAATCTCCACACCCGAAGTCGATCAGCTTGACCTCCAGCGTGTCTGGGTTCACAAGCAGGTTTTGCAGCTTTATGTCCCGGTGGAATACCCCACGGTAACAGCAAACATTGGCAGCATAAACGGCTTGCCACAGGATGGTTTGTGCCGTTTTCTCGCTGAGGACGCCTCTGCCGAGTTGAAGGAGTGCCTCCAGATCCATGCTTGGCGTAGGCCGCTCCATGACCATGACGTAATGGTTTGTAAAGACCTGCCAATCGAGGAGCTGAATGATATTCGGACACCTGGACCCACTGCTGGCCATATTTGCCAAGGTTATTTCAAGAGGAAGTGGCTGGTCAAAagactaaaaacaaaataatgttgGTTTTCAAACAAGGGGTTTAGACCACAGCATGTCGATAATAAATATAAGACATTATAAATTGAACACAGCGACTGAGAAGGGAAAGAACAGAAAGTGTACTTTACTTACAGAGCGGAGACCTTGACTATTTGGTGTCTTCTGGACAAATTTAACAGCCACCTGTTTAAAGGAATAAGCGAACAATTAACATGTGCTTGGAGATCATTTCATTCCAGTCATAAATCCTGAACAGAGGTTTCGTCAATTTGAAGTTGTCAGCAGAAATGTCTAAACAATAAAAGCTCTGATGATGCTCTGTACATAGTGAACTTCATCAAaggttttgagtctacaaaaatgaatacctgcgcctccatcgccgtgtgcgcgttttaaaggctatttacgggtgcaccagacctgacgcggggaccggatctctggactaggactagctttaatctcaccaattttcataattcaattgctatgtcaaatattttaaaatatttagatgtgTGTTCTGACGGTTGGAACGACGGGAGTGTTAATagttaatgacagaaagaattttcagtttgagtaAACAATCCCTTATGAAAATTGGGATTGTTGGCACATTGGGGCACAAactctttctgagggggcaatgcctcCCTTTGCCcccccccgtagcgccgggcctgaCTTCCTGCCTCTCCAGCTACAGTCCTGATCACATCACCACCAGGGGCGATTTTCATACTACTGTTGTAAAGAAACACTTGGACATGTGATTATGACATTTCAGGAACGTCTGGGACTGGGAagtaaaaaacataaatttttttcctgtgtttgtaaTTTTCCCTCTCTGTTATTTTAATGATGTATTTTTAGTTTGTTAATCAGATTTGTCACATCAcactattttttgtttattttattcgttTTGTGGCTTTGCCAttcaattttaaatacaaatctgTAAACTACAGTTCAAACATTGATATGATCCTGGAGtcagtttttattataaaaagtttatttcaTATTCATTTAATGTTGAAGATATGcacagctttttaaataaacttgaa

Function

GO:

id name namespace
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0072359 circulatory system development biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0045165 cell fate commitment biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0072045 convergent extension involved in nephron morphogenesis biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097389

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073308 True 2749 lncRNA 0.40 2 32189139 32192519

Neighbor

gene id symbol gene type direction distance location
XLOC_037247 coq10b coding upstream 694 32178050 ~ 32188445 (+)
XLOC_037246 pikfyve coding upstream 83105 32073606 ~ 32106034 (+)
XLOC_037245 si:dkey-83m22.7 coding upstream 117709 32069957 ~ 32071430 (+)
XLOC_037244 BX470263.1 coding upstream 195706 31993311 ~ 31993433 (+)
XLOC_037243 NA coding upstream 274677 31913496 ~ 31914462 (+)
XLOC_037249 NA coding downstream 31176 32223695 ~ 32238109 (+)
XLOC_037250 hspe1 coding downstream 108498 32301017 ~ 32305007 (+)
XLOC_037251 mob4 coding downstream 114343 32306862 ~ 32312862 (+)
XLOC_037252 NA coding downstream 152364 32344883 ~ 32349025 (+)
XLOC_037253 plcl1 coding downstream 165995 32358514 ~ 32457334 (+)
XLOC_037239 BX571700.1 non-coding upstream 693374 31495648 ~ 31495765 (+)
XLOC_037238 NA non-coding upstream 760405 31347037 ~ 31428734 (+)
XLOC_037237 NA non-coding upstream 846530 31280401 ~ 31342609 (+)
XLOC_037254 NA non-coding downstream 344227 32536746 ~ 32537384 (+)
XLOC_037257 NA non-coding downstream 699378 32891897 ~ 32895100 (+)
XLOC_037261 BX511259.1 non-coding downstream 882161 33074680 ~ 33082181 (+)

Expression


Co-expression Network