XLOC_037238


Basic Information

Item Value
gene id XLOC_037238
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 31347037 ~ 31428734 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073286
GGTTAGCAAAACAGTCCGACAGGGATTCGACTCTGAATTTACCTGAAAGTTTAACGTTAAGTTACTCACGATGAAGTTATTCGAGTATTTATTTGTTACATATAACAGAAACTGTGCACTTCAGAAACAAGCCATAATAATAGCGCTGAATGTTTAACAGTGACAAAAACCAAACAAGGAAATCATCTTGTTGTGCGGACAGTGGACACAGatTTTCCCTGTGAAAAAATTATCAGCCATCTCTCCTGTACTGTTGACTCACGGGGAGCGGCAGTGGTCAAAGGTGTGGTTAACGGCTTAACTCGACGTCCCAAAAGATCGGTCACACACTCCTTAAAGTGGCATCGCCTGAAGGGCACTGATAACACGCATCCTGCGTTCCTATTGGTTGATGTCCAGAAAACCAGCAATCTCACATGGAAGAATCTGTACATTAGAGGAAAGAAGTGACTGAGATGTCAGATCAGGAAAAAAGATGAAGCGACCAAGGATGGACAAAGAGGCGACAGACAGAGCTCCCCTGAGGTGCCAGGATGAATAAGCTGGGGAAGAAGCTTGGTGTCAACAGGTGGACGTTTGACGGGAGAGGCGTGGATGTGTCCAGCCAGTGGAACCTGGCGTCTGCTTGAACGCCCGTCAACACTGTACGCACCCACGTATTCACACAAATGCGCATGCATGTAAAGGGGGGAAAAACTCTTCACAGCTCTTCGCTTTCTGACAGATTGATCGGAGTTGCCAGAACGCTCTTCGGCTGTCAGTTTTGTAGCAACTAAATCATTCTCCCCAAAGATTTAAGCATTTGAAATTAAGATTTTACGCTGCGAATCATATGCCAAAAAAGCACCTATTGCATGTCACATGCATTAAACATTCAGACGACATTGTTTTGATGAATTACTGACCATCCGTTGACCCCCTGATGGTTCTCTACTGACCAGGAACACTGAATATTTGACAACTTTTCTAATATGGTTCCCTTTGGCGGCAGATAACCGGTGCATTTTGAAATCTGGTGATGCCATTTTTGGTGTGCAAATATAAAGTAGAAAACTTATATTATATGATCTTATAAATATtgtgttcaaactatttaaaatgtctttttaaggAAAACAATTGCTTTGTAGTATCTCCAC
>TCONS_00073287
GTTAGCAAAACAGTCCGACAGGGATTCGACTCTGAATTTACCTGAAAGTTTAACGTTAAGTTACTCACGATGAAGTTATTCGAGTATTTATTTGTTACATATAACAGAAACTGTGCACTTCAGAAACAAGCCATAATAATAGCGCTGAATGTTTAACAGTGACAAAAACCAAACAAGGAAATCATCTTGTTGTGCGGACAGTGGACACAGatTTTCCCTGTGAAAAAATTATCAGCCATCTCTCCTGTACTGTTGACTCACGGGGAGCGGCAGTGGTCAAAGGTGTGGTTAACGGCTTAACTCGACGTCCCAAAAGATCGGTCACACACTCCTTAAAGTGGCATCGCCTGAAGGGCACTGATAACACGCATCCTGCGTTCCTATTGGTTGATGTCCAGAAAACCAGCAATCTCACATGGAAGAATCTGTACATTAGAGGAAAGCTGTCAGGTATTGAGAGGAGAAGAGGGGGGCTGCCCGCTGCTGTGCCGGCATTCGCCGCGACTCACGCCCACCTCCGAGTCACATCTGGTGCAGGGAGCGAGCGCTCCGATAAGTGAACCGAAGCCGATGGTGCGCCACACAGATGTTGCCCCCACTACTTTCTCCTCTAAGTCTTCCAAATCTCCTTGAGAGAGTCGCACACACTTTGGCCTCC
>TCONS_00075153
ATTGTGTCTGGGAGAAGCCGGGCAGAGGAAAAGGAGGATGCTGTGGCTCGTCTCTGTCTCCTGGGTAGGGTGCAGGAACTGGAATTAGGCCAACCTACAATCACTAAGGTGGACGTTTGACGGGAGAGGCGTGGATGTGTCCAGCCAGTGGAACCTGGCGTCTGCTTGAACGCCCGTCAACACTGTACGCACCCACGTATTCACACAAATGCGCATGCATGTAAAGGGGGGAAAAACTCTTCACAGCTCTTCGCTTTCTGACAGATTGATCGGAGTTGCCAGAACGCTCTTCGGCTGTCAGTTTTGTAGCAACTAAATCATTCTCCCCAAAGATTTAAGCATTTGAAATTAAGATTTTACGCTGCGAATCATATGCCAAAAAAGCACCTATTGCATGTCACATGCATTAAACATTCAGACGACATTGTTTTGATGAATTACTGACCATCCGTTGACCCCCTGATGGTTCTCTACTGACCAGGAACACTGAATATTTGACAACTTTTCTAATATGGTTCCCTTTGGCGGCAGATAACCGGTGCATTTTGAAATCTGGTGATGCCATTTTTGGTGTGCAAATATAAAGTAGAAAACTTATATTATATGATCTTATAAATATtgtgttcaaactatttaaaatgtctttttaaggAAAACAATTGCTTTGTAGTATCTCCAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000097995

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073286 False 1139 lncRNA 0.43 4 31347037 31428734
TCONS_00073287 False 658 lncRNA 0.48 3 31347038 31395689
TCONS_00075153 True 679 lncRNA 0.43 2 31416834 31428734

Neighbor

gene id symbol gene type direction distance location
XLOC_037237 NA coding upstream 4428 31280401 ~ 31342609 (+)
XLOC_037236 NA coding upstream 77894 31264874 ~ 31269143 (+)
XLOC_037235 clybl coding upstream 87892 31075896 ~ 31259145 (+)
XLOC_037234 dachd coding upstream 284333 30820290 ~ 31062704 (+)
XLOC_037233 klf12b coding upstream 563145 30720048 ~ 30783892 (+)
XLOC_037239 BX571700.1 coding downstream 66914 31495648 ~ 31495765 (+)
XLOC_037240 si:ch211-168k14.2 coding downstream 105867 31534601 ~ 31549563 (+)
XLOC_037241 si:ch211-168k14.2 coding downstream 127309 31556043 ~ 31586956 (+)
XLOC_037242 itgbl1 coding downstream 323894 31752628 ~ 31833565 (+)
XLOC_037243 NA coding downstream 484762 31913496 ~ 31914462 (+)
XLOC_037232 BX571809.3 non-coding upstream 630131 30695283 ~ 30716906 (+)
XLOC_037223 NA non-coding upstream 1081614 30264357 ~ 30265423 (+)
XLOC_037222 NA non-coding upstream 1097613 30248495 ~ 30249424 (+)
XLOC_037244 BX470263.1 non-coding downstream 564577 31993311 ~ 31993433 (+)
XLOC_037248 BX530407.4 non-coding downstream 760405 32189139 ~ 32192519 (+)
XLOC_037249 NA non-coding downstream 794961 32223695 ~ 32238109 (+)

Expression


Co-expression Network