RNA id: TCONS_00073286



Basic Information


Item Value
RNA id TCONS_00073286
length 1139
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id XLOC_037238
representative False

Chromosome Information


Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 31347037 ~ 31428734 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


GGTTAGCAAAACAGTCCGACAGGGATTCGACTCTGAATTTACCTGAAAGTTTAACGTTAAGTTACTCACGATGAAGTTATTCGAGTATTTATTTGTTACATATAACAGAAACTGTGCACTTCAGAAACAAGCCATAATAATAGCGCTGAATGTTTAACAGTGACAAAAACCAAACAAGGAAATCATCTTGTTGTGCGGACAGTGGACACAGatTTTCCCTGTGAAAAAATTATCAGCCATCTCTCCTGTACTGTTGACTCACGGGGAGCGGCAGTGGTCAAAGGTGTGGTTAACGGCTTAACTCGACGTCCCAAAAGATCGGTCACACACTCCTTAAAGTGGCATCGCCTGAAGGGCACTGATAACACGCATCCTGCGTTCCTATTGGTTGATGTCCAGAAAACCAGCAATCTCACATGGAAGAATCTGTACATTAGAGGAAAGAAGTGACTGAGATGTCAGATCAGGAAAAAAGATGAAGCGACCAAGGATGGACAAAGAGGCGACAGACAGAGCTCCCCTGAGGTGCCAGGATGAATAAGCTGGGGAAGAAGCTTGGTGTCAACAGGTGGACGTTTGACGGGAGAGGCGTGGATGTGTCCAGCCAGTGGAACCTGGCGTCTGCTTGAACGCCCGTCAACACTGTACGCACCCACGTATTCACACAAATGCGCATGCATGTAAAGGGGGGAAAAACTCTTCACAGCTCTTCGCTTTCTGACAGATTGATCGGAGTTGCCAGAACGCTCTTCGGCTGTCAGTTTTGTAGCAACTAAATCATTCTCCCCAAAGATTTAAGCATTTGAAATTAAGATTTTACGCTGCGAATCATATGCCAAAAAAGCACCTATTGCATGTCACATGCATTAAACATTCAGACGACATTGTTTTGATGAATTACTGACCATCCGTTGACCCCCTGATGGTTCTCTACTGACCAGGAACACTGAATATTTGACAACTTTTCTAATATGGTTCCCTTTGGCGGCAGATAACCGGTGCATTTTGAAATCTGGTGATGCCATTTTTGGTGTGCAAATATAAAGTAGAAAACTTATATTATATGATCTTATAAATATtgtgttcaaactatttaaaatgtctttttaaggAAAACAATTGCTTTGTAGTATCTCCAC

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00075151 lncRNA upstream 4428 31280401 ~ 31342609 (+) False XLOC_037237
TCONS_00075152 lncRNA upstream 4428 31329049 ~ 31342609 (+) True XLOC_037237
TCONS_00074916 lncRNA upstream 9299 31328441 ~ 31337738 (+) False XLOC_037237
TCONS_00074915 lncRNA upstream 9299 31328441 ~ 31337738 (+) False XLOC_037237
TCONS_00074914 lncRNA upstream 9299 31328441 ~ 31337738 (+) False XLOC_037237
TCONS_00075154 lncRNA downstream 484762 31913496 ~ 31914462 (+) True XLOC_037243
TCONS_00073295 lncRNA downstream 641223 32069957 ~ 32071133 (+) False XLOC_037245
TCONS_00073308 lncRNA downstream 760405 32189139 ~ 32192519 (+) True XLOC_037248
TCONS_00074917 lncRNA downstream 794961 32223695 ~ 32238109 (+) True XLOC_037249
TCONS_00075155 lncRNA downstream 916149 32344883 ~ 32349025 (+) True XLOC_037252
TCONS_00073285 mRNA upstream 60027 31282161 ~ 31287010 (+) False XLOC_037237
TCONS_00073283 mRNA upstream 87892 31167711 ~ 31259145 (+) False XLOC_037235
TCONS_00073281 mRNA upstream 88711 31075896 ~ 31258326 (+) False XLOC_037235
TCONS_00073284 mRNA upstream 98360 31222026 ~ 31248677 (+) True XLOC_037235
TCONS_00073280 mRNA upstream 284333 30890549 ~ 31062704 (+) True XLOC_037234
TCONS_00073289 mRNA downstream 105867 31534601 ~ 31549563 (+) True XLOC_037240
TCONS_00073290 mRNA downstream 127309 31556043 ~ 31586956 (+) False XLOC_037241
TCONS_00073292 mRNA downstream 323894 31752628 ~ 31810803 (+) False XLOC_037242
TCONS_00073293 mRNA downstream 366609 31795343 ~ 31833565 (+) True XLOC_037242
TCONS_00073296 mRNA downstream 641255 32069989 ~ 32071430 (+) True XLOC_037245
TCONS_00073282 other upstream 180635 31076056 ~ 31166402 (+) False XLOC_037235
TCONS_00073279 other upstream 331711 30820290 ~ 31015326 (+) False XLOC_037234
TCONS_00073260 other upstream 1042707 30294073 ~ 30304330 (+) False XLOC_037225
TCONS_00073244 other upstream 1668785 29676902 ~ 29678252 (+) False XLOC_037213
TCONS_00073240 other upstream 1692039 29642857 ~ 29654998 (+) False XLOC_037211
TCONS_00073288 other downstream 66914 31495648 ~ 31495765 (+) True XLOC_037239
TCONS_00073291 other downstream 137665 31566399 ~ 31572679 (+) True XLOC_037241
TCONS_00073294 other downstream 564577 31993311 ~ 31993433 (+) True XLOC_037244
TCONS_00073304 other downstream 671469 32100203 ~ 32103807 (+) True XLOC_037246
TCONS_00073307 other downstream 755321 32184055 ~ 32187252 (+) True XLOC_037247

Expression Profile


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