XLOC_037213 (rnaseh2b)


Basic Information

Item Value
gene id XLOC_037213
gene name rnaseh2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 29671553 ~ 29679172 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073243
GCATTTATACACAGCGGACAACTTGTTTTTACAGTTTAACTTTTAAAACTAGTTATTTGAAATGACTTCTAAAAAGAAACGGTCTGCACACACCGAGAGCGACAGTTGGGTTGTCATTGCTCCAGATTCAGCACtagacactggcaggtctgtcgaCAGTGATCCTTCCTTCATCAAACTGAAGAATCCTTCTACAGGTAGTTCTTCGCTGTACCTGTTTGGCTGTGGAGATTTGAGTGTTTATGAAGTAAAAGCTTTTTCTGAAGACTTCCGGTCTTGGTTTATTGGACAGACAGTGCAAAGAGATGGTAGACTGCTGTACGTGACTCCCATGGATCCTTTGTTTCTGCTGTTGCCATATATTAGCAGTGTTGGCAAAGAGGGAAAGTTCCAGTCGGTGAAGCAGATGGTGATGGATGAGGATTATCCCGGCTGCTCAAGACTTCTGCAATGCAAACAGGGTCTAGACTCCCTTCATCATGTGGCTGATGAGAAAGAGGTCAATGATCAAAAGTATCACAAATATAACCTGGAGAAGACCTTGGAATGGCTAAAgaaaaaggtTCAGCGGACAGTGAATGCACTCAAAAAAGGTAACATCTCTGTAGGGGGAGGAGTAAAGTCCAGCACATTTGTCAGAGTCAAACATGAAGATGCTTCTGAAGAGGACTACTTGCGTTATGCACATGGCCTCATATCAGAGTACATCAGTGAAGACTTGAGCAAAGATCTCCTTAAGCATCTGGAGTTACCAGAGATTTCCAGCCCTAAAGAAGCAGAGCCGCCTTCTAAGAAACGAAAACTGTCAGATAAACCAGTAGAGGCTGGAGAAGACTACACCAAGTTCAACAGTGCCGATTTTGCACGAAAACCACCAAAGAAGATGACTGCAGCTCAGAAGAGTCTTGCTAAAGCAGACAAAACTGGCATGAAGAGCTTGGCATCGTTCTTCAGTCCAAAAGTCAAACAAGAGAAaaactgagtgagtgagtgtgagtttgtgtgtgtcaaaacatttttgctaataaaataatagaaaggT
>TCONS_00073244
ATGGTAGACTGCTGTACGTGACTCCCATGGATCCTTTGTTTCTGCTGTTGCCATATATTAGCAGTGTTGGCAAAGAGGGAAAGTTCCAGTCGGTGAAGCAGATGGTGATGGATGAGGATTATCCCGGCTGCTCAAGACTTCTGCAATGCAAACAGGGTCTAGACTCCCTTCATCATGTGGCTGATGAGAAAGGTTATCCTGAGAACATACATCGCTTAACCAATCACGATAAAGATTTCTCAGCATGAAAGGCTTGCGACTGGCAGATTAAGGTCAATGATCAAAAGTATCACAAATATAACCTGGAGAAGACCTTGGAATGGCTAAAgaaaaaggtTCAGCGGACAGTGAATGCACTCAAAAAAGGTAACATCTCTGTAGGGGGAGGAGTAAAGTCCAGCACATTTGTCAGAGTCAAACATGAAGATGCTTCTGAAGAGGACTACTTGCGTTATGCACATGGCCTCATATCAGAGTACATCAGTGAAGACTTGAGCAAAGATCTCCTTAAGCATCTGGA
>TCONS_00073245
AGAGGTCAATGATCAAAAGTATCACAAATATAACCTGGAGAAGACCTTGGAATGGCTAAAgaaaaaggtTCAGCGGACAGTGAATGCACTCAAAAAAGGTAACATCTCTGTAGGGGGAGGAGTAAAGTCCAGCACATTTGTCAGAGTCAAACATGAAGATGCTTCTGAAGAGGACTACTTGCGTTATGCACATGGCCTCATATCAGAGTACATCAGTGAAGACTTGAGCAAAGATCTCCTTAAGCATCTGGAGTTACCAGAGATTTCCAGCCCTAAAGAAGCAGAGCCGCCTTCTAAGAAACGAAAACTGTCAGATAAACCAGTAGAGGCTGGAGAAGACTACACCAAGTTCAACAGTGCCGATTTTGCACGAAAACCACCAAAGAAGATGACTGCAGCTCAGAAGAGTCTTGCTAAAGCAGACAAAACTGGCATGAAGAGCTTGGCATCGTTCTTCAGTCCAAAAGTCAAACAAGAGAAaaactgagtgagtgagtgtgagtttgtgtgtgtcaaaacatttttgctaat

Function

symbol description
rnaseh2b Predicted to be involved in RNA catabolic process and ribonucleotide metabolic process. Predicted to be located in nucleus. Predicted to be part of ribonuclease H2 complex. Predicted to be active in nucleoplasm. Is expressed in several structures, including alar plate midbrain region; blood; immature eye; nervous system; and ventral mesenchyme. Human ortholog(s) of this gene implicated in Aicardi-Goutieres syndrome. Orthologous to human RNASEH2B (ribonuclease H2 subunit B).

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:0006401 RNA catabolic process biological_process
GO:0032299 ribonuclease H2 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0004523 RNA-DNA hybrid ribonuclease activity molecular_function

KEGG:

id description
ko03030 DNA replication
ko03032 DNA replication proteins

ZFIN:

id description
ZDB-GENE-040426-1090 Predicted to be involved in RNA catabolic process and ribonucleotide metabolic process. Predicted to be located in nucleus. Predicted to be part of ribonuclease H2 complex. Predicted to be active in nucleoplasm. Is expressed in several structures, including alar plate midbrain region; blood; immature eye; nervous system; and ventral mesenchyme. Human ortholog(s) of this gene implicated in Aicardi-Goutieres syndrome. Orthologous to human RNASEH2B (ribonuclease H2 subunit B).

Ensembl:

ensembl_id ENSDARG00000005128

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073243 False 1042 mRNA 0.43 11 29671553 29679172
TCONS_00073244 False 520 nonsense_mediated_decay 0.44 6 29676902 29678252
TCONS_00073245 True 531 lncRNA 0.43 6 29677820 29679156

Neighbor

gene id symbol gene type direction distance location
XLOC_037212 NA coding upstream 1935 29662709 ~ 29669618 (+)
XLOC_037211 trim13 coding upstream 12818 29642857 ~ 29658735 (+)
XLOC_037210 phf11 coding upstream 37199 29616854 ~ 29634354 (+)
XLOC_037209 mcf2lb coding upstream 54963 29581662 ~ 29616590 (+)
XLOC_037208 rnf17 coding upstream 100325 29548195 ~ 29571228 (+)
XLOC_037214 BX649442.1 coding downstream 11506 29690678 ~ 29694199 (+)
XLOC_037215 cmss1 coding downstream 305838 29985010 ~ 30007477 (+)
XLOC_037216 col8a1a coding downstream 411484 30090656 ~ 30102778 (+)
XLOC_037217 jagn1a coding downstream 429469 30108641 ~ 30111105 (+)
XLOC_037218 tfg coding downstream 433251 30112423 ~ 30128760 (+)
XLOC_037206 BX537139.2 non-coding upstream 153198 29518239 ~ 29518355 (+)
XLOC_037205 NA non-coding upstream 167778 29500107 ~ 29503775 (+)
XLOC_037204 BX537139.1 non-coding upstream 228944 29442493 ~ 29442609 (+)
XLOC_037200 NA non-coding upstream 637581 29032416 ~ 29033972 (+)
XLOC_037219 NA non-coding downstream 475612 30154784 ~ 30155280 (+)
XLOC_037222 NA non-coding downstream 569323 30248495 ~ 30249424 (+)
XLOC_037223 NA non-coding downstream 585185 30264357 ~ 30265423 (+)
XLOC_037232 BX571809.3 non-coding downstream 1016111 30695283 ~ 30716906 (+)

Expression


Co-expression Network