XLOC_037218 (tfg)


Basic Information

Item Value
gene id XLOC_037218
gene name tfg
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 30112423 ~ 30128760 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073252
GCGCATGCGCGTTTGTGGTTTTGCCACGTACAGGTCGCTGTGAGGCGTTTCCGATCAGTCAGTCAGGCATCGTTCAGCTGAAGTCCAGGACACACAGGCTACTGCTGGGATTGACACGTCCAAAACACCAGTATGAATGGACAGCTGGACCTGAGTGGGAAGCTGATCATCAAAGCTCAGCTGGGTGATGATATTCGCCGTATTCCTATCCACAATGAAGACATCACCTACGACGAGCTCCTGCTGATGATGCAGAGAGTTTTTCGTGGCCAGTTACAGAGCAGCGATGAAGTCACCATCAAATACAAGGACGAAGATGACGACCTTATCACCATCTTTGACAGTTCTGATTTGTCTTTTGCGATCCAGTGCAGTAGAATATTGAAGCTCACTCTTTTTGTGAATGGGCAGCCTCGGCCACTGGAGTCATCTCAGGTGAAGCACCTGCGCAGAGAACTGATCCATTTGAGGAATAAAGTCAACAGCCTGCTGGACAGCCTGGAGCCACCCTTAGAGTCTGTCCCAGAAAGCACCAACCCAGAAACTgAATGTGTAAATGATGCAGTAGACTCCACAATGAGGCATGCTCCTCCTGTCAGTGCTGCCAGCATGTCTGCTTTTGACCCACTGAAGAACCAGGAAGAGGTCAACAAGAATGTCATTTCTGCATTTGGTTTAACTGAGGAACCTGCCCCAGTTCCAGCTGTAGCTGCCACCGCTGCTGCAGAGGAGCGCTCTGCTACTCCAGACAGTATTGCCTCTTCATCCTCtgcagcgccccctgctgctgtgGCTCCACAGGCCCCCCCACCTTATTCAGGGGTCCAGCAACCCCCCTCTACTACTATGGATGGTCAGATGTATCAGCAGTATCAGGCTCCAGGTGGATATCCTCCACCAGCTGGACCACAGCAGCAGTATGGCATGCAGTACCCTGCTGGTTATACTCCTCAATCTGGTGTTCCTCAGGCTCCGCCTCCTCAACAGCAGTTCCAGAATTACCCCACCCCTACTTCTCAGGCTGCTGGCGCTCCTGGCTCCGCCCCTGGCTTTTCTGGCCAATCACAGCCTCCTGCTCCCCAAGCACCTGCTCAGTATCCACCCGGAGCCTTCCCGCCTCAAAACTACACATCCCAGGCCTCTCAGCAGCCCGCAAACTACAGCCTGCCTCCAACCTCGCAGGCCACAGCCGCCTACCAGCCCCGTCCCGGATACACCCCACCACCAGGTGCCACCCCTCCACCCGGGGGTGCCAATCCCTATGCCCGAAACCGCCCGCCTTACGGCCAGGGCTACACCCAACCAGGTCCTGGCTATCGGTAAAAGCCCTTTAACATCCCTACAGCACCTCACTATAACTTCCCTCTGTCTCCAACACATCAACCCCCCatcaaatctgtgtttgacaTCCTAATATTGTGTTTGTGTTCGTTTGTGCTttcgggtgtgtgtgtgtgtgtatgactgaATGAGCTTGTGtgatgagtgtatgtgtgtgtttgcacacaTGGGAGACCAAAcggtgtcagagagagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgagtgtgagtgtgagtgtgagtgtgtgtgtggagtgagAGACAATTTAATTTTATCACCGGTCTCCTCATTTGTGTTTTGTCAtaaagcgtctgttgaaacactAGAAAATGATCATAATCAAAGTGATATTTGTTAGTTTTCTTTACTCATTTTCTTGACTTTTGTTTTCTCCAAATGTCCTGGTTTTTACTAACCCCTGACTGGCCCTGTAAAGTCAAGCCTGTCGTTTCTGTATAAACTGTACCATTGTTTTCAGGAGGTGAATAAAGACTTTGAGACTG
>TCONS_00073253
GCGCATGCGCGTTTGTGGTTTTGCCACGTACAGGTCGCTGTGAGGCGTTTCCGATCAGTCAGTCAGGCATCGTTCAGCTGAAGTCCAGGACACACAGGCTACTGCTGGGATTGACACGTCCAAAACACCAGCAGTATGAATGGACAGCTGGACCTGAGTGGGAAGCTGATCATCAAAGCTCAGCTGGGTGATGATATTCGCCGTATTCCTATCCACAATGAAGACATCACCTACGACGAGCTCCTGCTGATGATGCAGAGAGTTTTTCGTGGCCAGTTACAGAGCAGCGATGAAGTCACCATCAAATACAAGGACGAAGATGACGACCTTATCACCATCTTTGACAGTTCTGATTTGTCTTTTGCGATCCAGTGCAGTAGAATATTGAAGCTCACTCTTTTTGTGAATGGGCAGCCTCGGCCACTGGAGTCATCTCAGGTGAAGCACCTGCGCAGAGAACTGATCCATTTGAGGAATAAAGTCAACAGCCTGCTGGACAGCCTGGAGCCACCCTTAGAGTCTGTCCCAGAAAGCACCAACCCAGAAACTgAATGTGTAAATGATGCAGTAGACTCCACAATGAGGCATGCTCCTCCTGTCAGTGCTGCCAGCATGTCTGCTTTTGACCCACTGAAGAACCAGGAAGAGGTCAACAAGAATGTCATTTCTGCATTTGGTTTAACTGAGGAACCTGCCCCAGTTCCAGCTGTAGCTGCCACCGCTGCTGCAGAGGAGCGCTCTGCTACTCCAGACAGTATTGCCTCTTCATCCTCtgcagcgccccctgctgctgtgGCTCCACAGGCCCCCCCACCTTATTCAGGGGTCCAGCAACCCCCCTCTACTACTATGGATGGTCAGATGTATCAGCAGTATCAGGCTCCAGGTGGATATCCTCCACCAGCTGGACCACAGCAGCAGTATGGCATGCAGTACCCTGCTGGTTATACTCCTCAATCTGGTGTTCCTCAGGCTCCGCCTCCTCAACAGCAGTTCCAGAATTACCCCACCCCTACTTCTCAGGCTGCTGGCGCTCCTGGCTCCGCCCCTGGCTTTTCTGGCCAATCACAGCCTCCTGCTCCCCAAGCACCTGCTCAGTATCCACCCGGAGCCTTCCCGCCTCAAAACTACACATCCCAGGCCTCTCAGCAGCCCGCAAACTACAGCCTGCCTCCAACCTCGCAGGCCACAGCCGCCTACCAGCCCCGTCCCGGATACACCCCACCACCAGGTGCCACCCCTCCACCCGGGGGTGCCAATCCCTATGCCCGAAACCGCCCGCCTTACGGCCAGGGCTACACCCAACCAGGTCCTGGCTATCGGTAAAAGCCCTTTAACATCCCTACAGCACCTCACTATAACTTCCCTCTGTCTCCAACACATCAACCCCCCatcaaatctgtgtttgacaTCCTAATATTGTGTTTGTGTTCGTTTGTGCTttcgggtgtgtgtgtgtgtgtatgactgaATGAGCTTGTGtgatgagtgtatgtgtgtgtttgcacacaTGGGAGACCAAAcggtgtcagagagagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgagtgtgagtgtgagtgtgagtgtgtgtgtggagtgagAGACAATTTAATTTTATCACCGGTCTCCTCATTTGTGTTTTGTCAtaaagcgtctgttgaaacactAGAAAATGATCATAATCAAAGTGATATTTGTTAGTTTTCTTTACTCATTTTCTTGACTTTTGTTTTCTCCAAATGTCCTGGTTTTTACTAACCCCTGACTGGCCCTGTAAAGTCAAGCCTGTCGTTTCTGTATAAACTGTACCATTGTTTTCAGGAGGTGAATAAAGACTTTGAGACTGAA

Function

symbol description
tfg Predicted to enable identical protein binding activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within COPII vesicle coating. Predicted to be active in endoplasmic reticulum exit site. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 57. Orthologous to human TFG (trafficking from ER to golgi regulator).

GO:

id name namespace
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0048208 COPII vesicle coating biological_process
GO:0070971 endoplasmic reticulum exit site cellular_component
GO:0042802 identical protein binding molecular_function

KEGG:

id description
ko05200 Pathways in cancer
ko05216 Thyroid cancer

ZFIN:

id description
ZDB-GENE-030131-8410 Predicted to enable identical protein binding activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within COPII vesicle coating. Predicted to be active in endoplasmic reticulum exit site. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 57. Orthologous to human TFG (trafficking from ER to golgi regulator).

Ensembl:

ensembl_id ENSDARG00000003641

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073252 False 1867 mRNA 0.51 8 30112423 30128758
TCONS_00073253 True 1872 mRNA 0.51 8 30112423 30128760

Neighbor

gene id symbol gene type direction distance location
XLOC_037217 jagn1a coding upstream 1318 30108641 ~ 30111105 (+)
XLOC_037216 col8a1a coding upstream 9645 30090656 ~ 30102778 (+)
XLOC_037215 cmss1 coding upstream 104946 29985010 ~ 30007477 (+)
XLOC_037214 BX649442.1 coding upstream 418224 29690678 ~ 29694199 (+)
XLOC_037213 rnaseh2b coding upstream 433251 29671553 ~ 29679172 (+)
XLOC_037219 NA coding downstream 26024 30154784 ~ 30155280 (+)
XLOC_037220 senp7a coding downstream 75655 30204415 ~ 30206763 (+)
XLOC_037221 senp7a coding downstream 82278 30211038 ~ 30213671 (+)
XLOC_037222 NA coding downstream 119735 30248495 ~ 30249424 (+)
XLOC_037223 NA coding downstream 135597 30264357 ~ 30265423 (+)
XLOC_037212 NA non-coding upstream 442805 29662709 ~ 29669618 (+)
XLOC_037206 BX537139.2 non-coding upstream 594068 29518239 ~ 29518355 (+)
XLOC_037205 NA non-coding upstream 608648 29500107 ~ 29503775 (+)
XLOC_037204 BX537139.1 non-coding upstream 669814 29442493 ~ 29442609 (+)
XLOC_037232 BX571809.3 non-coding downstream 566523 30695283 ~ 30716906 (+)
XLOC_037236 NA non-coding downstream 1136114 31264874 ~ 31269143 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_00620687_00621072 NA coding CI01000009 null 620687 ~ 621537 (+)