XLOC_037215 (cmss1)


Basic Information

Item Value
gene id XLOC_037215
gene name cmss1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 29985010 ~ 30007477 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073247
AGATATGCGATTGCGGTTTGAGACATGGCTGATGATTTAGGAGACGAGTGGTGGACCCAGGGCGATAATTCAGATGTGCCTGAGGTAGAGGAGGAAACAGAGCCTGCAGAAGAAAAACAACCGATTAAATCTACACCTAAGAAAAGGAAGGTTGAAAAACAGATTCCAGATGCcacaaagaaaaagaagaaggcaACAGTTAAGaaagaatgtttcaTCACGCAAGAGAGATCAGAGGAAAAGCCTGATAACGAGTctaacaaaaacaagaaaagaagAAAGAAGAAGAAAACTATCACAGATGTCCTGACAAGCTCTAAGCCTGTGCCCGGCTCTCCAGTTGACCTTGTGAGCCTTCTGAAGACTTACCACAGCCAGACCCGCTCTGTTATTGAGCAGGAGGAACTGACGTTACAAGATTCTTGTTTCCTCAGCTGTAATGACCTCACACACAGCTTGTCTTCCTACCTCAAAGAAGTTTGTCCAAAGTGGGCTAAAATGCAGAAACAGCACACCCAGACCAGCTCAGTGGTTTTGCTAATTGTTTGTGGATCTGCTTTAAGAACCATTGATCTCATTAAGCAGCTGGTGACATTCAAAGGACAAGCTAAAGTGCTGAAGCTGTTTGCAAAACACATCAAAGTGGAAGAACAGATAAAGTCATTGAGTAAAGGTGTGACCCATATTGCTGTTGGAACTCCTGGGAGAATTTGCGCACTGTTagagaaagAGGGATTGACTGTGCAAGGACTACGTTATCTGGTGCTGGACTGGAACTACAGAGACCAGAAGCAAAGGAGGATGGTGGATGTACCAGAGgtgaAAGGAGACTTACTAAAAATGATGGACCAAGGTCTAATCCAGAGCTGCAGAGAAGGAACGGTTAAAATAGGACTCTTCTGAAACTCTTCTGTTATTTAaacctttgtgttcaacatattTGAAAGAGAGATTGTTGTGTACTTTAATGCCATATGTCTGCTACAAGTAAAAAACAAGTTacaagttgttgttgtttttttttataaataaaacaaatctggtTGGATAAAAA
>TCONS_00073248
AGGGATTGACTGTGCAAGGACTACGTTATCTGGTGCTGGACTGGAACTACAGAGACCAGAAGCAAAGGAGGATGGTGGATGTACCAGAGgtgaAAGGAGACTTACTAAAAATGATGGACCAAGGTCTAATCCAGAGCTGCAGAGAAGGAACGGTTAAAATAGGACTCTTCTGAAACTCTTCTGTTATTTAaacctttgtgttcaacatattTGAAAGAGAGATTGTTGTGTACTTTAATGCCATATGTCTGCTACAAGTAAAAAACAAGTTacaagttgttgttgtttttttttataaataaaacaaatctggtTGGATAAAAACATGTCCGTTCTTGTGTACCAGTAGCTCCTCCCACTATAGACAGTTAATACTTTATTCAGCATATTCTGCTTATTGCAATAtcctgttacacacacacacacacacacacacacacacacactccctcattGCAGCTCCTACACATTACAACAGAGCCCAGGAATGAGGAGAGATTCAATTCTGATTGAAAAGAATGTGTGCAGTTCTGGGAAGCTTTCACAGACCGAGCTAAAGactagtctatgtgtgtgtgtgctgtatgtgTAAGGTGGAGTGGCTGCAGTTAATAAGTAACAGTCACTTCAGGTTCAAAGGTTCATTCACACTGGCAACTGGGAAAACTTCCTTCGGTGGCAGTTAAAAAACACCTTCTAATTTGAATCTGTGTTAGTAGTTTTGTAAAGCTGTAGGGAGTCTGAGATGGCCAAGAAGGCGGTAGGTTTAGGGCCACTGTCGAGGCGTCCAGATAACTCGGCGTTTAAACAGCAGAGATTACCAGCCTGGTCTCCATCTCTCACGGCACAGACCGTCCTGCCAATCTTCTACATCCTAGCTGTCGTGTGCCTGCTGCTGGGCATCTGGCTCCTCATCACTGTCCAGAACACACACCAACTGAAGGTGGACTACACCGATGCTGGAACATGTGAACGGTGCTTCGAGCTTCATGCCAACAACACCAGAACGGTCTGCACATGTTCAGTCAACTTCTACGTTCCAAGACCCTTTCCGGGCGACGTGTTCTTCTACTACGGTCTGAGGAACTTTCATCAGAACCTGCGGAGGTACATGGACTCCCGCGATGATGCACAGATGGTGGGGAGGAAGAACAACCTGAAGGCACCGAGTTCATACTGCGCTCCGTTTCATTACGATGCAAACGGGGTACCCATCGCCCCCTGCGGTGCCGTAGCCAACAGCATGTTCAACGacTCATTTACACTGATGTATCATCAAGCTAATGGGGCAGAAGTGCAAGTTCCTCTCTATAGGAAGGGCATTGCTTGGTACACAGACAAAAATGTCAAGTTCCGCAACCCTCCGACCAACAACACATTTTCCCTTCGACAAGCCTTTGAAGGCACGACTCGGCCCTTATACTGGCAGCACTCGGTTTATGAGCTGGATGACACAGACTCCAACAACAATGGTTTCATAAATGACGACCTGATTGTCTGGATGAGAGAGGCAGCCTTCCCTAATTTCAAAAAGCTTTATGGGGTTCTCAATCGTGCTCAAGAGCCTTTCACTGAAGGCCTGCCCGCCGGCAACTACAACATCTCTATAGATTACAATTTTCCTGTTGAGCCCTTCAGAGGTCGAAAGGAGCTGGTGATCTCAATGGTGACCTGGTTTGGTGGGCAGAATTACTTTCTGCCCATTGCGTATCTGGTGACCAGTGGGCTAATCCTGGTGACTGCTGTCGTTCTCACAACAGTGTTTGTCAAATTTGGCAAAAATGGCAAGAACATGGAGGAATAA
>TCONS_00073249
ACTTCAGGTTCAAAGGTTCATTCACACTGGCAACTGGGAAAACTTCCTTCGGTGGCAGTTAAAAAACACCTTCTAATTTGAATCTGTGTTAGTAGTTTTGTAAAGCTGTAGGGAGTCTGAGATGGCCAAGAAGGCGGTAGGTTTAGGGCCACTGTCGAGGCGTCCAGATAACTCGGCGTTTAAACAGCAGAGATTACCAGCCTGGTCTCCATCTCTCACGGCACAGACCGTCCTGCCAATCTTCTACATCCTAGCTGTCGTGTGCCTGCTGCTGGGCATCTGGCTCCTCATCACTGTCCAGAACACACACCAACTGAAGGTGGACTACACCGATGCTGGAACATGTGAACGGTGCTTCGAGCTTCATGCCAACAACACCAGAACGGTCTGCACATGTTCAGTCAACTTCTACGTTCCAAGACCCTTTCCGGGCGACGTGTTCTTCTACTACGGTCTGAGGAACTTTCATCAGAACCTGCGGAGGTACATGGACTCCCGCGATGATGCACAGATGGTGGGGAGGAAGAACAACCTGAAGGCACCGAGTTCATACTGCGCTCCGTTTCATTACGATGCAAACGGGGTACCCATCGCCCCCTGCGGTGCCGTAGCCAACAGCATGTTCAACGacTCATTTACACTGATGTATCATCAAGCTAATGGGGCAGAAGTGCAAGTTCCTCTCTATAGGAAGGGCATTGCTTGGTACACAGACAAAAATGTCAAGTTCCGCAACCCTCCGACCAACAACACATTTTCCCTTCGACAAGCCTTTGAAGGCACGACTCGGCCCTTATACTGGCAGCACTCGGTTTATGAGCTGGATGACACAGACTCCAACAACAATGGTTTCATAAATGACGACCTGATTGTCTGGATGAGAGAGGCAGCCTTCCCTAATTTCAAAAAGCTTTATGGGGTTCTCAATCGTGCTCAAGAGCCTTTCACTGAAGGCCTGCCCGCCGGCAACTACAACATCTCTATAGATTACAATTTTCCTGTTGAGCCCTTCAGAGGTCGAAAGGAGCTGGTGATCTCAATGGTGACCTGGTTTGGTGGGCAGAATTACTTTCTGCCCATTGCGTATCTGGTGACCAGTGGGCTAATCCTGGTGACTGCTGTCGTTCTCACAACAGTGTTTGTCAAATTTGGCAAAAATGGCAAGAACATGGAGGAATAAACCAAAGGAAGAAGGAACTGTCCATCAGGAAAGAAAGATAAATGGTGCCCATCAGAATCACTGAAAACAAGCAGTTTGAACCATGAATTTTAAAAGTTTACATATTTCGAGAAAACATTCTTGACCACAGCCCATTTTATACTGGATGGTTCTTAAAAGTAATAGAAATGAAAAGATTTGTTTAACATTTACTCATCCTgctttagtttctttcttctgttggacagaaaagaagatattttgtaaaatgtagcATCTGACATCCATATCAAGTctgtaaatactatttttaaatgtaaaaataaataaataaataaatagataataataataataataataataataataataataataataataataataataataataataatggcctCAATTTCCAGACAGGTAATGAGTAATGCATAAGTATAATTTCCGGCTGTCTCAAAATCATTGCATTGGGGTAACTTCTCACATCTGATATTGTCTATGTTTAGAAAATCTTGTACTGCTCATTTCTGCAAGCtttatgggtcacactttacaaataatgtttcattagtttatgtatttactaaaatgaactaataatgaacaatacgtGTACAGCATATACTGCATTAAGTGCAAATTCATGCTTATTAACATCAGTTATTACACTGTAAACATGATCTAACAATGAacatctttattttcatttactaacagtaacacagatgaataaatactgaaatattgtaataaatgaatagttcattgtttgttcatgttaatgaaTACATTACCTAATATTAGCTAAtgcaactttattgtaaagtgttgcaaCAAGTGTTATGTATATGGGAATAGTGTGCAAATTCACTTTAAAGCGCACATAAAATGTCCTCATAACACACAGTGTTTGTAAAACGCATACAAAAGTGACAATGGACTTGATATTACATTTTCAGTGTGAACATATATTAAAGGGTTAGAAATTTGTCTCACAGCATGATAAGTGAATCACAAGCAGTTTTGCGctctttattattatgtttttttttcagactggAAATTAATTACAACACTGACAGTGGAATATCATGTCAACCGCCACCTTTGTGTGCTTCACACTTCACAAATActgtttgttatattatttttaatagtccTTCCCTATATAGTATACTGCAGTTGcactcaaccctgttcctgaagatcttCCTTCctggagagttcagctccaaccctgatcaaacacaactaaaccaactaagtaggatctgaaagagcacttggtaattaaagacaggtgtgtttgatctgatgcagctgaactctgcaggatggaaggtagatctccaggaaaagGGTTGGGCACAGCTGGTATACTGTATCTGTACGTAAACAAGCAGTAGGCTGGCAGCAGGGGGCATCTGTGACAATATGTGAAAATGCGATGGTTAACTGACGACTTGCACTACATTTACTTGTTTTACAGCatcaatttttcatttaaaagcagCTTAAGAATGCCTCAGTTTACACACTcggcttttgtgtgtgttttttatgagCTTTCAGCACTCCAAAGTGGCTCATTTGTCATTCAGACAGCTCGTTTTTGGGAGAAATTTATTACAGGAACTTTCTATCGGTGACAAATGATTTCTAATGGTTTTATAATTGTTATGACATTAATAATTGAGGGACATCATGGCATATTTGTACTTTTAATTTGTGATACTGCAAGATGTTGAATGAACTATAAATATTAAGCAATTAAATAATACTATCAGTAGAATTTGTAATAAAAGTGCAATTATACAAATGCTAGTCAGGCTGCCAAAAAGAATATTTAAGCCTACTGCATTTTGACTATAGTAAAActagttaatttaatttaggcTATAATGAAATTGTGATAGTattgtttttacagtaaaattataaACTTTACCGTATTGgtttacatgaaaaaatacaatgtgtatatgcattttttaaaatgtgttgtcatttatctaataaaatatttgctaatatttttgtttaaaatgtccctctgatttaatgaaaaattatatGGAAAATATTAAGTATTCCACAATTCTTAGCGTCTCTGAGTTCATAATTCACAAATActgtttattgtattatatttaatagtCCTTCACTATATAGTATACTGCAGTTgtgctcaaccatgttcctgaagaTTTACCTTTAAACGATTTACGTGTTAAACGAGTgaaatgtgatttttgttttattttttaaactactgATGACAGCTTGTAAACTTAAAGTTTTGCCATTTACAGCTTTATGTATTGTCtttcataaaacaacaaaaacaaagtacTTATGCTTACATTGCTAATGTTTTAACTTGGGAAGAGGTAGAGAAAACATATTTGCTTGAATAAACCTGGATTTTTAGTCAcaactatttttttaaactgttattttaacaaaattgtgatttttctagAGAAAAACATGCAGCGTTATTGTTTTTTAACgctttgttttttaaaggggtggtccacagtgtatttttaagtctTGGCTGTGTCTATAAGATGTgaagcaatgtgtgcttatgctttacttgtagaaaatcatgttattttttcatatatctttctTTGATTACATaaagctactcagctaacatatttcctagttcctctgaaaggctcgCCGTCataaggctctgattggtcagctaacataatgtgctgtgattcacggATTGGTTACAAGTCACCACGTCACACCCCTATAAGCACttgcttttgcgctgtgtaagcACTGTCAGTCAAAGCAGCTGTTAGCAGCATtagctgcctgaatcagacaAAAAATGAAGAGCAAACCACTGAACCTCACACCtgctctttaaagggcacctaggttaccccttttttcagatttaatataagtcttttgcgtctctagaatgtgtatataaagtttcagatgaAAAAGTAccaatcagatttttcattataccttttacaagatgctgttttatactgatttccagcagggggtggttttgtcgtactgcgcctttaagccgagttctgcccgcctactatttctacatgcctcctccctcagctgcgtcagacaacagacagacttaaaggaagaaggtctcacgtagcgtttgtgagatactacagtaagaactaacctttactaatcagtattgtgaagttgcattgatgagtcacacacaatatcgttacaaagttaacgcgcgcgctcacacacacacacacacacacacagatacacatgcaggcaggcaggcagacagacagagcgcgcttagcttacttaaggctaacctcaagtactttgtggatatctgttatgctaatgtacaaaataaacctgatttaacttccacaaa

Function

symbol description
cmss1 Is expressed in several structures, including alar plate midbrain region; immature eye; midbrain; neural plate; and segmental plate. Orthologous to human CMSS1 (cms1 ribosomal small subunit homolog).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1127 Predicted to be located in membrane. Predicted to be integral component of membrane.
ZDB-GENE-041010-146 Is expressed in several structures, including alar plate midbrain region; immature eye; midbrain; neural plate; and segmental plate. Orthologous to human CMSS1 (cms1 ribosomal small subunit homolog).

Ensembl:

ensembl_id ENSDARG00000009430 ENSDARG00000112579

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073247 False 1054 mRNA 0.41 9 29985010 29994138
TCONS_00073248 False 1804 mRNA 0.46 8 29992271 30004074
TCONS_00073249 True 4583 mRNA 0.37 7 29994439 30007477

Neighbor

gene id symbol gene type direction distance location
XLOC_037214 BX649442.1 coding upstream 290811 29690678 ~ 29694199 (+)
XLOC_037213 rnaseh2b coding upstream 305838 29671553 ~ 29679172 (+)
XLOC_037212 NA coding upstream 315392 29662709 ~ 29669618 (+)
XLOC_037211 trim13 coding upstream 326275 29642857 ~ 29658735 (+)
XLOC_037210 phf11 coding upstream 350656 29616854 ~ 29634354 (+)
XLOC_037216 col8a1a coding downstream 83179 30090656 ~ 30102778 (+)
XLOC_037217 jagn1a coding downstream 101164 30108641 ~ 30111105 (+)
XLOC_037218 tfg coding downstream 104946 30112423 ~ 30128760 (+)
XLOC_037219 NA coding downstream 147307 30154784 ~ 30155280 (+)
XLOC_037220 senp7a coding downstream 196938 30204415 ~ 30206763 (+)
XLOC_037206 BX537139.2 non-coding upstream 466655 29518239 ~ 29518355 (+)
XLOC_037205 NA non-coding upstream 481235 29500107 ~ 29503775 (+)
XLOC_037204 BX537139.1 non-coding upstream 542401 29442493 ~ 29442609 (+)
XLOC_037222 NA non-coding downstream 241018 30248495 ~ 30249424 (+)
XLOC_037223 NA non-coding downstream 256880 30264357 ~ 30265423 (+)
XLOC_037232 BX571809.3 non-coding downstream 687806 30695283 ~ 30716906 (+)
XLOC_037236 NA non-coding downstream 1257397 31264874 ~ 31269143 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_00547369_00551459 NA coding CI01000009 null 547369 ~ 552216 (+)