XLOC_037210 (phf11)


Basic Information

Item Value
gene id XLOC_037210
gene name phf11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 29616854 ~ 29634354 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073237
CAGTTTCAGTGAAAACAGGATGAGACGCTGCTACTTTTGAATCTCAACGAGCATCGCTCAACATGGGTTCTGGTCAAAGTCCATCAACGTACAGAATAATTTGCGCCCTGTGCAAAACATCAGATGAAACCGAAACCACTGGACCACTGTCATCCAAAGAGGACATCTCTGCACACCAAAACTGTTTGTTGTTTTCATCAAATATCTACTGCAAGAACTCACCCACATATGATGACCTGTTTGGTTTTGATTTGGAAGATGTAAAGAAAGAGCAGCGGAGAGGACAAAAACTTCGTTGTTACTTCTGTAACAAAACTGGTGCTACAGTAGGATGTGAAATAAAGCGATGTCCACGATCATTTCATTATCCTTGCGCCATAAAGGCCGATGCCAGAGCAATTGAAGACTTCTCTACAGGCACATACAGagtgtattgtAAATCCCATGATCCAAACCCCATAGAAATAAATGACGAAATTGATAACGATGTTGACCTTGTGTTGGCTTCAGTGGAGAAACATGTACCTGCAGAACAGCACAATCAGTCAACTCCTGACCCTGAACGTACAAGGCCCAGTGAAGAAGTCAAGACACCAGCAAAAGcttCATCAAATGGAGGTTTAACATCTGATCAGAGGTCTTGTGGGACAGCAGACAAGCGCAGGGTCAGAGCATACATAATCTAGCACACAATCTCCTTCTCATAAACTAATGGCATTTTCCTTAGTGCAGTCGTCATCATCACCATCTAAAAAACAGCCTGTattgaaTGTGATTCTCAAGAACACTCCCCAGAACACAAAACACccaccaaaaagaaaaaaaagagacgtCTTGAATACCCAgATAATGAAAACCCAACCAGTGCTGATGCTGTAATGGCTCCAGAAGTTTCAGCTCCAGAGGAGTCCATGACTGTTAACCAACCCAACCATTCCACTCCTCTGCCTGAAAATACGAGGTCCTGTGAAAAGCTCAACCTATCAACCACAGgtgctgctgctgatgatgaggatgatgaaactgacattgaatcagaAGAGTCTCAGAGTGTGTTAACATATGAAACGGACCCTGTGCCATGTATTGTTATTTTAGATTCGGGACCCTCATTGGAATCAGAGATCAGTCTAGAATCTTGTTCTTCGAGAAATCCTAGTCCAGCACATGAGTTCGTCACTGTCCCTAAACAGGAGAAAATAACACCCACAGATAGAACCTCTCCAGCTCAAACTGTCACACCACAAGTACCTGCGCCAAACCAGAAGCGTGTGAGCGATGGTCCATCAGTGTCACCACAGCATCCAAGCCCCACAGCAGGCTTAAGAATATCTGCAGTATGCACACTAGCACAATCTGCCATCAAAAAAGAGCAGCTGTCAGATCCTCCAGCAGAAGTAAGCACTAGTGATTCACAAAGCACTGTGCCGAACTGCCAGACCCGAGCTGCCAAATTCTGGACGAGATGCAATCAGGCCGGGTGGAGTGAAGGAATCTTCTCAGAGCTCATGTCTCTGCTGCATAGCCTGGGACAAAGAGTGCAGTCGGGGCAAGCCAGTTACCAGGACTATGAACTTGCTTTCGAAGCACTGAAGGGATCTGGACAACTGCCTTCTATCATTGCTCAGATAGAAAAAGATTTAGAGAAGCAGGAACAGGATTTACAGATGAAAAAAGCAGCACTGTGTGATGCCAAAGCTGCACTGGCTGATTAATATATTACTGTATAATAGTGTTGTTATCATgcagttattattgttaaaaggAACAAAACTTCCTTTCTGTTTATAATTCAAAAAACATGATCAAGCAGTCTTTTATAAATGAGTGATGCACgaaatgtttacaaaaatgttAGGTTTAAGTTTTCGATAGTTTTAGATCAGTGACAACAATATCCTGAAATGTACCACTGTATTTTGATATCCGTTCTATTttctaaataaactgaaaattgcGGACAGTAAGAAA
>TCONS_00073236
CAGTTTCAGTGAAAACAGGATGAGACGCTGCTACTTTTGAATCTCAACGAGCATCGCTCAACATGGGTTCTGGTCAAAGTCCATCAACGTACAGAATAATTTGCGCCCTGTGCAAAACATCAGATGAAACCGAAACCACTGGACCACTGTCATCCAAAGAGGACATCTCTGCACACCAAAACTGTTTGTTGTTTTCATCAAATATCTACTGCAAGAACTCACCCACATATGATGACCTGTTTGGTTTTGATTTGGAAGATGTAAAGAAAGAGCAGCGGAGAGGACAAAAACTTCGTTGTTACTTCTGTAACAAAACTGGTGCTACAGTAGGATGTGAAATAAAGCGATGTCCACGATCATTTCATTATCCTTGCGCCATAAAGGCCGATGCCAGAGCAATTGAAGACTTCTCTACAGGCACATACAGagtgtattgtAAATCCCATGATCCAAACCCCATAGAAATAAATGACGAAATTGATAACGATGTTGACCTTGTGTTGGCTTCAGTGGAGAAACATGTACCTGCAGAACAGCACAATCAGTCAACTCCTGACCCTGAACGTACAAGGCCCAGTGAAGAAGTCAAGACACCAGCAAAAGcttCATCAAATGGAGGTTTAACATCTGATCAGAGGTCTTGTGGGACAGCAGACAAGCGCAGGattgaaTGTGATTCTCAAGAACACTCCCCAGAACACAAAACACccaccaaaaagaaaaaaaagagacgtCTTGAATACCCAgATAATGAAAACCCAACCAGTGCTGATGCTGTAATGGCTCCAGAAGTTTCAGCTCCAGAGGAGTCCATGACTGTTAACCAACCCAACCATTCCACTCCTCTGCCTGAAAATACGAGGTCCTGTGAAAAGCTCAACCTATCAACCACAGgtgctgctgctgatgatgaggatgatgaaactgacattgaatcagtgagtctatCTGTGCTGAACAAAACACACTTACGTCACATTgaAGAGTCTCAGAGTGTGTTAACATATGAAACGGACCCTGTGCCATGTATTGTTATTTTAGATTCGGGACCCTCATTGGAATCAGAGATCAGTCTAGAATCTTGTTCTTCGAGAAATCCTAGTCCAGCACATGAGTTCGTCACTGTCCCTAAACAGGAGAAAATAACACCCACAGATAGAACCTCTCCAGCTCAAACTGTCACACCACAAGTACCTGCGCCAAACCAGAAGCGTGTGAGCGATGGTCCATCAGTGTCACCACAGCATCCAAGCCCCACAGCAGGCTTAAGAATATCTGCAGTATGCACACTAGCACAATCTGCCATCAAAAAAGAGCAGCTGTCAGATCCTCCAGCAGAAGTAAGCACTAGTGATTCACAAAGCACTGTGCCGAACTGCCAGACCCGAGCTGCCAAATTCTGGACGAGATGCAATCAGGCCGGGTGGAGTGAAGGAATCTTCTCAGAGCTCATGTCTCTGCTGCATAGCCTGGGACAAAGAGTGCAGTCGGGGCAAGCCAGTTACCAGGACTATGAACTTGCTTTCGAAGCACTGAAGGGATCTGGACAACTGCCTTCTATCATTGCTCAGATAGAAAAAGATTTAGAGAAGCAGGAACAGGATTTACAGATGAAAAAAGCAGCACTGTGTGATGCCAAAGCTGCACTGGCTGATTAATATATTACTGTATAATAGTGTTGTTATCATgcagttattattgttaaaaggAACAAAACTTCCTTTCTGTTTATAATTCAAAAAACATGATCAAGCAGTCTTTTATAAATGAGTGATGCACgaaatgtttacaaaaatgttAGGTTTAAGTTTTCGATAGTTTTAGATCAGTGACAACAATATCCTGAAATGTACCACTGTATTTTGATATCCGTTCTATTttctaaataaactgaaaattgcGGACAGTAAGAAA
>TCONS_00073238
CAACGAGCATCGCTCAACATGGGTTCTGGTCAAAGTCCATCAACGTACAGAATAATTTGCGCCCTGTGCAAAACATCAGATGAAACCGAAACCACTGGACCACTGTCATCCAAAGAGGACATCTCTGCACACCAAAACTGTTTGTTGTTTTCATCAAATATCTACTGCAAGAACTCACCCACATATGATGACCTGTTTGGTTTTGATTTGGAAGATGTAAAGAAAGAGCAGCGGAGAGGACAAAAACTTCGTTGTTACTTCTGTAACAAAACTGGTGCTACAGTAGGATGTGAAATAAAGCGATGTCCACGATCATTTCATTATCCTTGCGCCATAAAGGCCGATGCCAGAGCAATTGAAGACTTCTCTACAGGCACATACAGagtgtattgtAAATCCCATGATCCAAACCCCATAGAAATAATGGAGAAACATGTACCTGCAGAACAGCACAATCAGTCAACTCCTGACCCTGAACGTACAAGGCCCAGTGAAGAAGTCAAGACACCAGCAAAAGcttCATCAAATGGAGGTTTAACATCTGATCAGAGGTCTTGTGGGACAGCAGACAAGCGCAGGattgaaTGTGATTCTCAAGAACACTCCCCAGAACACAAAACACccaccaaaaagaaaaaaaagagacgtCTTGAATACCCAgATAATGAAAACCCAACCAGTGCTGATGCTGTAATGGCTCCAGAAGTTTCAGCTCCAGAGGAGTCCATGACTGTTAACCAACCCAACCATTCCACTCCTCTGCCTGAAAATACGAGGTCCTGTGAAAAGCTCAACCTATCAACCACAGgtgctgctgctgatgatgaggatgatgaaactgacattgaatcagtgagtctatCTGTGCTGAACAAAACACACTTACGTCACATTgaAGAGTCTCAGAGTGTGTTAACATATGAAACGGACCCTGTG
>TCONS_00073239
CAAAGTCCATCAACGTACAGAATAATTTGCGCCCTGTGCAAAACATCAGATGAAACCGAAACCACTGGACCACTGTCATCCAAAGAGGACATCTCTGCACACCAAAACTGTTTGTTGTTTTCATCAAATATCTACTGCAAGAACTCACCCACATATGATGACCTGTTTGGTTTTGATTTGGAAGATGTAAAGAAAGAGCAGCGGAGAGGACAAAAACTTGCATGGACAGTCAACAAATCACATCCCTTCTGAGTCAATCTAAGATCTGGCGAGCACTGATTCAACATTCAACAGAAACAGGCGCAGTAGTATCACACTAGCCCAACAAAGCCTGACAAAGTTGTTGTCTCGTTGTTACTTCTGTAACAAAACTGGTGCTACAGTAGGATGTGAAATAAAGCGATGTCCACGATCATTTCATTATCCTTGCGCCATAAAGGCCGATGCCAGAGCAATTGAAGACTTCTCTACAGGCACATACAGagtgtattgtAAATCCCATGATCCAAACCCCATAGAAATAAATGACGAAATTGATAACGATGTTGACCTTGTGTTGGCTTCAGTGGAGAAACATGTACCTGCAGAACAGCACAATCAGTCAACTCCTGACCCTGAACGTACAAGGCCCAGTGAAGAAGTCAAGACACCAGCAAAAGcttCATCAAATGGAGGTTTAACATCTGATCAGAGGTCTTGTGGGACAGCAGACAAGCGCAGGattgaaTGTGATTCTCAAGAACACTCCCCAGAACACAAAACACccaccaaaaagaaaaaaaagagacg

Function

symbol description
phf11 Predicted to enable metal ion binding activity. Predicted to be active in nucleus. Orthologous to human PHF11 (PHD finger protein 11).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-417 Predicted to enable metal ion binding activity. Predicted to be active in nucleus. Orthologous to human PHF11 (PHD finger protein 11).

Ensembl:

ensembl_id ENSDARG00000021677

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073237 False 1971 nonsense_mediated_decay 0.43 18 29616854 29634354
TCONS_00073236 False 1914 mRNA 0.43 18 29616854 29634354
TCONS_00073238 False 936 mRNA 0.44 15 29616898 29630483
TCONS_00073239 True 789 nonsense_mediated_decay 0.43 11 29616928 29626279

Neighbor

gene id symbol gene type direction distance location
XLOC_037209 mcf2lb coding upstream 264 29581662 ~ 29616590 (+)
XLOC_037208 rnf17 coding upstream 45626 29548195 ~ 29571228 (+)
XLOC_037207 fdx1 coding upstream 81401 29520696 ~ 29535453 (+)
XLOC_037206 BX537139.2 coding upstream 98499 29518239 ~ 29518355 (+)
XLOC_037205 NA coding upstream 113079 29500107 ~ 29503775 (+)
XLOC_037211 trim13 coding downstream 8503 29642857 ~ 29658735 (+)
XLOC_037212 NA coding downstream 28355 29662709 ~ 29669618 (+)
XLOC_037213 rnaseh2b coding downstream 37199 29671553 ~ 29679172 (+)
XLOC_037214 BX649442.1 coding downstream 56324 29690678 ~ 29694199 (+)
XLOC_037215 cmss1 coding downstream 350656 29985010 ~ 30007477 (+)
XLOC_037204 BX537139.1 non-coding upstream 174245 29442493 ~ 29442609 (+)
XLOC_037200 NA non-coding upstream 582882 29032416 ~ 29033972 (+)
XLOC_037199 NA non-coding upstream 798493 28816215 ~ 28818361 (+)
XLOC_037219 NA non-coding downstream 520430 30154784 ~ 30155280 (+)
XLOC_037222 NA non-coding downstream 614141 30248495 ~ 30249424 (+)
XLOC_037223 NA non-coding downstream 630003 30264357 ~ 30265423 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_00326208_00333904 NA coding CI01000009 null 326208 ~ 334301 (+)