XLOC_037207 (fdx1)


Basic Information

Item Value
gene id XLOC_037207
gene name fdx1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 29520696 ~ 29535453 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073224
TCTTTCCGGGTTGTCCTACAAATTGACGTCACGACCGTCCAGCTCTGTTTCCGCCTCATATAAATAGTCGAAagtttcattcagtcagtcactcATGCAACCTTGGTAGATAGTTATTCGGCGACCCGTCgacagtatttacagtattgcaatGTCTGCGTGTGTTTTAAGAGCGTTTCTCCAGCGAGCGGCTGTTATGCGTCAAGCTGCACAACAAACAATCAGTCAAACCAGAGCGTTTCCTCAGAGCTACACACACATTAGAGGAATAAACACATACGCCAATTCACTAAGGGCTGAAGAGAAGGTGACTGTTCATTTCCTAAATCGTGATGGAAAAAGGATTACGGTGAAAGCTTCAATTGGAGAATCGCTACTTGATGTTGTTGTCGACCGTGATCTAGATATTGATGGATTTGGTGCATGCGAGGGAACTTTGGCCTGCTCTACGTGCCACCTTATTTTCGAAGAGGACGTTTATAAGAAGCTTGGACCCGTTTCTGATGAGGAAATGGACATGCTGGACTTGGCTTATGGGCTTACAGACACGTCTCGTCTGGGCTGTCAGGTGTGTTTGAGGAAGGATCTGGACGGGATGATACTGCGCGTGCCAGATGTGATCTCTGATGCTCGAGCTGACAGTGAAAAAGAGTCCTCCACAGCCCCACCCAAAATATAATCTGAATAAAGCCCATCTGTATATCATAAACACTGCAATATGGAGATATCTTTAATAGCAGGTATTTTAATATGTACTATTTTAAtagaaaaccacaatttaaatgATAACATTTATCGTTTATGTTATTTACATACTGCCGTGAGTAGATTTTATAATTTCagtgattgtattttttttaattgtgcagATTCTGCAACACTCATCTGGTTTTAAATTGCAGATATGCCTGTAGCTGACTTACTGCAATAAATACTATGTTTAACTTTTTAA
>TCONS_00073225
GTTTCCGCCTCATATAAATAGTCGAAagtttcattcagtcagtcactcATGCAACCTTGGTAGATAGTTATTCGGCGACCCGTCgacagtatttacagtattgcaatGTCTGCGTGTGTTTTAAGAGCGTTTCTCCAGCGAGCGGCTGTTATGCGTCAAGCTGCACAACAAACAATCAGTCAAACCAGAGCGTTTCCTCAGAGCTACACACACATTAGAGGAATAAACACATACGCCAATTCACTAAGGAGGATTTTATAGCGGCTTTGGGCTGAAGAGAAGGTGACTGTTCATTTCCTAAATCGTGATGGAAAAAGGATTACGGTGAAAGCTTCAATTGGAGAATCGCTACTTGATGTTGTTGTCGACCGTGATCTAGATATTGATGGATTTGGTGCATGCGAGGGAACTTTGGCCTGCTCTACGTGCCACCTTATTTTCGAAGAGGACGTTTATAAGAAGCTTGGACCCGTTTCTGATGAGGAAATGGACATGCTGGACTTGGCTTATGGGCTTACAGACACGTCTCGTCTGGGCTGTCAGGTGTGTTTGAGGAAGGATCTGGACGGGATGATACTGCGCGTGCCAGATGTGATCTCTGATGCTCGAGCTGACAGTGAAAAAGAGTCCTCCACAGCCCCACCCAAAATATAATCTGAATAAAGCCCATCTGTATATCATAAACACTGCAATATGGAGATATCTTTAATAGCAGGTATTTTAATATGTACTATTTTAAtagaaaaccacaatttaaatgATAACATTTATCGTTTATGTTATTTACATACTGCCGTGAGTAGATTTTATAATTTCagtgattgtattttttttaattgtgcagATTCTGCAACACTCATCTGGTTTTAAATTGCAGATATGCCTGTAGCTGACTTACTGCAATAAATACTATGTTTAACTTTTTAA
>TCONS_00073226
cactcATGCAACCTTGGTAGATAGTTATTCGGCGACCCGTCgacagtatttacagtattgcaatGTCTGCGTGTGTTTTAAGAGCGTTTCTCCAGCGAGCGGCTGTTATGCGTCAAGCTGCACAACAAACAATCAGTCAAACCAGAGCGTTTCCTCAGAGCTACACACACATTAGAGGAATAAACACATACGCCAATTCACTAAGGGCTGAAGAGAAGGTGACTGTTCATTTCCTAAATCGTGATGGAAAAAGGATTACGGTGAAAGCTTCAATTGGAGAATCGCTACTTGATGTTGTTGTCGACCGTGATCTAGATATTGATGGATTTGGTGCATGCGAGGGAACTTTGGCCTGCTCTACGTGCCACCTTATTTTCGAAGAGGACGTTTATAAGAAGCTTGGACCCGTTTCTGATGAGGAAATGGACATGCTGGACTTGGCTTATGGGCTTACAGACACGTCTCGTCTGGGCTGTCAGGTGTGTTTGAGGAAGGATCTGGACGGGATGATACTGCGCGTGCCAGATGTGATCTCTGATGCTCGAGCTGACAGTGAAAAAGAGTCCTCCACAGCCCCACCCAAAATATAATCTGAATAAAGCCCATCTGTATATCATAAACACTGCAATATGGAGATATCTTTAATAGCAGATTCTGCAACACTCATCTGGTTTTAAATTGCAGATATGCCTGTAGCTGACTTACTGCAATAAATACTATGTTTAACTTT
>TCONS_00073227
cactcATGCAACCTTGGTAGATAGTTATTCGGCGACCCGTCgacagtatttacagtattgcaatGTCTGCGTGTGTTTTAAGAGCGTTTCTCCAGCGAGCGGCTGTTATGCGTCAAGCTGCACAACAAACAATCAGTCAAACCAGAGCGTTTCCTCAGAGCTACACACACATTAGAGGAATAAACACATACGCCAATTCACTAAGGTTTCTCTCCATCAAGTGTTCGTCTCTTTCTTCTTTTTGCTCCACTGCTTGGATCCACTGCTCATAAAGCTCCTCACACAACAGACTGCCAGATTACCTTAAACACTGCAGCAGTAACTAGTACAGATTCTCCAGTCAGCGGTTCCTCGTAGTGGCCAGAATCCAGTTTTTCCTTCAGCTCTCGACAGGCCTTCACTCCTGCAGAACGCCGAAATATTCCTCGAGTCACGACGCCTTCGTTGCACAAACACCTCAGCATGTCCTGGAGA
>TCONS_00073228
tgcaatGTCTGCGTGTGTTTTAAGAGCGTTTCTCCAGCGAGCGGCTGTTATGCGTCAAGCTGCACAACAAACAATCAGTCAAACCAGAGCGTTTCCTCAGAGCTACACACACATTAGAGGAATAAACACATACGCCAATTCACTAAGGGCTGAAGAGAAGGTGACTGTTCATTTCCTAAATCGTGATGGAAAAAGGATTACGGTGAAAGCTTCAATTGGAGAATCGCTACTTGATGTTGTTGTCGACCGTGATCTAGATATTGATGGATTTGGTGCATGCGAGGGAACTTTGGCCTGCTCTACGTGCCACCTTATTTTCGAAGAGGACGTTTATAAGAAGCTTGGACCCGTTTCTGATGAGGAAATGGACATGCTGGACTTGGCTTATGGGCTTACAGACACGTCTCGTCTGGGCTGTCAGGTGTGTTTGAGGAAGGATCTGGACGGGATGATACTGCGCGTGCCAGATGTGATCTCTGATGCTCGAGCTGACAGTGAAAAAGAGTCCTCCACAGCCCCACCCAAAATATAATCTGAATAAAGCCCATCTGTATATCATAAACACTGCAATATGGAGATATCTTTAATAGCAGGTTTCTCTCCATCAAGTGTTCGTCTCTTTCTTCTTTTTGCTCCACTGCTTGGATCCACTGCTCATAAAGCTCCTCACACAACAGACTGCCAGGTATATTGCGTACAAATTCCTACCAGATCCACAGATATGAGAAAGCAGAATCATGACCATGAAGTCATTGTTTACTGATGagtataactgttcaaaagtttgaggtcagtttttttttttttttttttaaagaaagacatGAATATttatagttggtggtttatttggCTGTGGCGGACCCCTGA

Function

symbol description
fdx1 Predicted to enable 2 iron, 2 sulfur cluster binding activity; electron transfer activity; and metal ion binding activity. Acts upstream of or within negative regulation of epiboly involved in gastrulation with mouth forming second. Is expressed in brain; digestive system; heart; and pleuroperitoneal region. Orthologous to human FDX1 (ferredoxin 1).

GO:

id name namespace
GO:1904087 negative regulation of epiboly involved in gastrulation with mouth forming second biological_process
GO:0005575 cellular_component cellular_component
GO:0009055 electron transfer activity molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-071015-2 Predicted to enable 2 iron, 2 sulfur cluster binding activity; electron transfer activity; and metal ion binding activity. Acts upstream of or within negative regulation of epiboly involved in gastrulation with mouth forming second. Is expressed in brain; digestive system; heart; and pleuroperitoneal region. Orthologous to human FDX1 (ferredoxin 1).

Ensembl:

ensembl_id ENSDARG00000056410

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073224 False 952 mRNA 0.41 4 29520696 29527021
TCONS_00073225 False 927 nonsense_mediated_decay 0.41 5 29520742 29527021
TCONS_00073226 False 730 nonsense_mediated_decay 0.44 5 29520785 29527017
TCONS_00073227 False 474 processed_transcript 0.47 3 29520785 29535453
TCONS_00073228 True 870 nonsense_mediated_decay 0.43 5 29520843 29533645

Neighbor

gene id symbol gene type direction distance location
XLOC_037206 BX537139.2 coding upstream 2341 29518239 ~ 29518355 (+)
XLOC_037205 NA coding upstream 16921 29500107 ~ 29503775 (+)
XLOC_037203 uggt2 coding upstream 38282 29430432 ~ 29482414 (+)
XLOC_037204 BX537139.1 coding upstream 78087 29442493 ~ 29442609 (+)
XLOC_037202 oxgr1b coding upstream 192687 29323163 ~ 29328009 (+)
XLOC_037208 rnf17 coding downstream 12742 29548195 ~ 29571228 (+)
XLOC_037209 mcf2lb coding downstream 46209 29581662 ~ 29616590 (+)
XLOC_037210 phf11 coding downstream 81401 29616854 ~ 29634354 (+)
XLOC_037211 trim13 coding downstream 107404 29642857 ~ 29658735 (+)
XLOC_037212 NA coding downstream 127256 29662709 ~ 29669618 (+)
XLOC_037200 NA non-coding upstream 486724 29032416 ~ 29033972 (+)
XLOC_037198 NA non-coding upstream 700943 28721987 ~ 28819753 (+)
XLOC_037214 BX649442.1 non-coding downstream 155225 29690678 ~ 29694199 (+)
XLOC_037219 NA non-coding downstream 619331 30154784 ~ 30155280 (+)
XLOC_037222 NA non-coding downstream 713042 30248495 ~ 30249424 (+)
XLOC_037223 NA non-coding downstream 728904 30264357 ~ 30265423 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_00242093_00247335 FDX1 coding CI01000009 null 241961 ~ 247343 (+)