CI01000009_00242093_00247335 (FDX1)


Basic Information

Item Value
gene id CI01000009_00242093_00247335
gene name FDX1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 241961 ~ 247343 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_00242093_00247335.mRNA
GCATATAAAGAGTCGACAGTTTCAATCCACCACACATGCAACGGTGGTAGTTAGTTGTTCAGCGGCCTGTCAACATATATATATATATATATATATATATATATATATATATATATATATATATAAAAAACAATGTCGGCATGTGTTTTGAGAGTGTTTCTTCAGCGAGCGGCTGTGTTGCGTAAAGCGGCGCAACAAACATTCAGTCAAACCAGAGTGTTTCCTCAATGCGTGACCGAGAGCAACGCACACAGTAGAGGAATAAACACATTCATTAGTTCACTAAGGGCTGAAGAGAAGGTGACCATCCACTTCCTAAATCGTGATGGAAAAAGGATTTCGGTGAAAGCATTAACTGGAGATTCACTACTCGATGTCGTTGTCAACCATGATCTAGATATTGATGGATTTGGTGCATGTGAGGGAACTTTGGCCTGCTCTACATGCCACCTTATTTTCGAGGAGGATGTTTATAAGAAGCTTGGACCTGTTTCTGATGAGGAAATGGACATGCTGGACTTGGCTTATGGGCTTACAGACACATCTCGTCTGGGCTGCCAGGTGTGTTTGAGGAAGGAACTGGATGGGATGATTCTGCGTGTGCCAGACGTGATATCTGATGCTCGAGTCGACAGTGAAAAAGAGTCCTCCACAGCCCCGCCTAAAGTATAATCTATTAA

Function

symbol description
fdx1 Predicted to enable 2 iron, 2 sulfur cluster binding activity; electron transfer activity; and metal ion binding activity. Acts upstream of or within negative regulation of epiboly involved in gastrulation with mouth forming second. Is expressed in brain; digestive system; heart; and pleuroperitoneal region. Orthologous to human FDX1 (ferredoxin 1).

GO:

id name namespace
GO:1904087 negative regulation of epiboly involved in gastrulation with mouth forming second biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_00242093_00247335.mRNA True 680 mRNA 0.43 4 241961 247343

Neighbor

gene id symbol gene type direction distance location
CI01000009_00179808_00221387 UGGT2 coding upstream 20574 179808 ~ 221387 (+)
CI01000009_00094836_00095813 NA coding upstream 145212 94371 ~ 97230 (+)
CI01000009_00260081_00285692 RNF17 coding downstream 12563 259906 ~ 285711 (+)
CI01000009_00300778_00315275 NA coding downstream 53435 300778 ~ 315405 (+)
CI01000009_00318494_00322434 NA coding downstream 70913 318256 ~ 323055 (+)
CI01000009_00326208_00333904 NA coding downstream 78865 326208 ~ 334301 (+)
CI01000009_00343750_00344964 TRIM13 coding downstream 96407 343750 ~ 345290 (+)
G50508 NA non-coding upstream 19113 176066 ~ 222848 (+)
G50480 NA non-coding upstream 123961 117563 ~ 118000 (+)
G50473 NA non-coding upstream 142905 97886 ~ 99056 (+)
G50469 NA non-coding upstream 162445 79280 ~ 79516 (+)
G50662 NA non-coding downstream 87696 335039 ~ 335961 (+)
G50664 NA non-coding downstream 111135 358478 ~ 358706 (+)
G50666 NA non-coding downstream 133205 380548 ~ 380857 (+)
G50627 NA non-coding downstream 133871 381214 ~ 385408 (+)
G50639 NA non-coding downstream 140855 388198 ~ 388652 (+)
G50920 NA other downstream 522498 769841 ~ 770233 (+)
CI01000009_01431700_01434463 NA other downstream 1175504 1429873 ~ 1435328 (+)
G51122 NA other downstream 1432803 1680146 ~ 1681966 (+)
CI01000009_01897343_01919208 PIKFYVE other downstream 1646892 1897343 ~ 1919516 (+)
G51274 NA other downstream 2007756 2255099 ~ 2350486 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037207 fdx1 coding NC_007120.7 CM002893.2 29520696 ~ 29535453 (+)